Wall clock time and date at job start Sat Apr 11 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46977 * 2 1 4 4 N 1.46897 * 109.47127 * 119.99289 * 2 1 3 5 5 C 1.46898 * 111.00102 * 306.05124 * 4 2 1 6 6 C 1.46901 * 110.99879 * 70.00230 * 4 2 1 7 7 C 1.53002 * 109.47080 * 75.32369 * 6 4 2 8 8 C 1.53080 * 109.43822 * 63.42190 * 7 6 4 9 9 C 1.53195 * 109.28976 * 181.23495 * 8 7 6 10 10 N 1.46921 * 108.89574 * 305.57819 * 9 8 7 11 11 C 1.34774 * 120.62902 * 233.56150 * 10 9 8 12 12 O 1.21587 * 120.00190 * 355.11497 * 11 10 9 13 13 N 1.34780 * 120.00033 * 175.11774 * 11 10 9 14 14 C 1.46501 * 120.00134 * 184.89668 * 13 11 10 15 15 C 1.50699 * 109.47114 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99966 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00137 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00044 * 180.02562 * 17 15 14 19 19 H 1.08006 * 119.99955 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99908 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00226 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99749 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47699 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47151 * 119.99770 * 22 20 18 25 25 H 1.48509 * 109.47079 * 239.99336 * 22 20 18 26 26 C 1.46925 * 118.73955 * 53.53809 * 10 9 8 27 27 C 1.53034 * 109.46278 * 183.62402 * 7 6 4 28 28 H 1.09004 * 109.47071 * 60.00816 * 1 2 3 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47309 * 300.00303 * 1 2 3 31 31 H 1.08995 * 109.47309 * 239.99696 * 2 1 3 32 32 H 1.09000 * 109.47491 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46554 * 299.99501 * 3 2 1 34 34 H 1.08996 * 109.47185 * 59.99196 * 3 2 1 35 35 H 1.09008 * 109.47420 * 189.62784 * 5 4 2 36 36 H 1.09006 * 109.47238 * 309.62669 * 5 4 2 37 37 H 1.08999 * 109.47140 * 69.63066 * 5 4 2 38 38 H 1.08997 * 109.47573 * 315.32588 * 6 4 2 39 39 H 1.08995 * 109.47502 * 195.32447 * 6 4 2 40 40 H 1.08999 * 109.46144 * 303.60261 * 7 6 4 41 41 H 1.08998 * 109.38848 * 61.36241 * 8 7 6 42 42 H 1.08999 * 109.62321 * 301.25031 * 8 7 6 43 43 H 1.09001 * 109.58383 * 185.71915 * 9 8 7 44 44 H 1.08996 * 109.58665 * 65.44267 * 9 8 7 45 45 H 0.97002 * 119.99836 * 4.89687 * 13 11 10 46 46 H 1.08994 * 109.47270 * 299.99790 * 14 13 11 47 47 H 1.09002 * 109.47392 * 60.00100 * 14 13 11 48 48 H 0.97000 * 119.99695 * 0.02562 * 17 15 14 49 49 H 0.96998 * 119.99874 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.58463 * 66.17729 * 26 10 9 51 51 H 1.08997 * 109.58792 * 186.45702 * 26 10 9 52 52 H 1.09008 * 109.49759 * 58.67541 * 27 7 6 53 53 H 1.09002 * 109.52518 * 298.59991 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 1.4342 -0.1146 2.4166 6 6 1.7530 -2.1348 1.1205 7 6 2.7407 -2.7836 0.1487 8 6 4.1641 -2.6292 0.6904 9 6 5.1528 -3.2527 -0.2998 10 7 4.7515 -4.6414 -0.5624 11 6 5.6290 -5.6517 -0.4024 12 8 6.7880 -5.4119 -0.1240 13 7 5.2217 -6.9279 -0.5509 14 6 6.1469 -8.0292 -0.2725 15 6 5.4502 -9.3436 -0.5132 16 8 4.2947 -9.3589 -0.8816 17 7 6.1114 -10.5021 -0.3201 18 6 5.4777 -11.6978 -0.5396 19 1 4.4485 -11.7115 -0.8668 20 6 6.1592 -12.8921 -0.3401 21 7 7.4113 -12.8755 0.0585 22 14 5.2960 -14.5213 -0.6398 23 1 3.9006 -14.2686 -1.0805 24 1 6.0189 -15.2781 -1.6934 25 1 5.2821 -15.3127 0.6168 26 6 3.3751 -4.9078 -1.0022 27 6 2.4058 -4.2691 -0.0027 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.9372 -0.5255 3.2922 36 1 1.5585 0.9682 2.4010 37 1 0.3726 -0.3580 2.4600 38 1 0.7350 -2.2972 0.7663 39 1 1.8693 -2.5804 2.1083 40 1 2.6690 -2.2943 -0.8226 41 1 4.2426 -3.1374 1.6515 42 1 4.3947 -1.5715 0.8176 43 1 6.1559 -3.2366 0.1264 44 1 5.1426 -2.6869 -1.2314 45 1 4.3161 -7.1172 -0.8422 46 1 7.0130 -7.9510 -0.9296 47 1 6.4729 -7.9761 0.7663 48 1 7.0356 -10.4898 -0.0259 49 1 7.8871 -13.7093 0.1975 50 1 3.2175 -4.4764 -1.9907 51 1 3.2061 -5.9839 -1.0419 52 1 1.3841 -4.3764 -0.3673 53 1 2.5010 -4.7644 0.9637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563946320.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:30 Heat of formation + Delta-G solvation = -85.085764 kcal Electronic energy + Delta-G solvation = -30188.839290 eV Core-core repulsion = 26094.480187 eV Total energy + Delta-G solvation = -4094.359103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58398 -40.28604 -39.77592 -38.16855 -36.26845 -35.41039 -34.52201 -33.36873 -32.21632 -32.00167 -29.52917 -28.54281 -27.89824 -26.48519 -25.85137 -24.10006 -23.78723 -21.88984 -21.38210 -20.68265 -20.20432 -19.94297 -19.21322 -17.56783 -17.25019 -17.00189 -16.93429 -16.57187 -16.31297 -15.99211 -15.80306 -15.64376 -15.37441 -15.20379 -14.97711 -14.70612 -14.33977 -14.21896 -14.07231 -13.90883 -13.75813 -13.54858 -13.49336 -13.15756 -13.05047 -12.91146 -12.70856 -12.58309 -12.44182 -12.22544 -12.15178 -12.10595 -12.04761 -11.85870 -11.57868 -11.53226 -11.46623 -11.16925 -11.11290 -10.55689 -10.30201 -10.09251 -9.48953 -9.11471 -8.50730 -6.00985 1.35343 1.42734 1.53986 1.60163 1.89170 2.09455 2.28324 2.84539 3.00984 3.15474 3.16410 3.76728 3.84722 3.91797 4.04646 4.17798 4.20141 4.21855 4.36985 4.38169 4.41389 4.44080 4.45535 4.49182 4.57586 4.58284 4.69818 4.77595 4.79608 4.82026 4.88176 4.96422 5.01826 5.04192 5.05588 5.09970 5.13736 5.18592 5.27046 5.32008 5.37096 5.39352 5.46397 5.52072 5.63932 5.91506 5.92707 6.22375 6.26528 6.47990 6.90833 7.03561 7.41783 7.51111 7.94135 8.66426 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.001828 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.588867 B =15316.116528 C =15911.601001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 C -0.140 4.140 4 N -0.540 5.540 5 C 0.021 3.979 6 C 0.061 3.939 7 C -0.071 4.071 8 C -0.106 4.106 9 C 0.127 3.873 10 N -0.623 5.623 11 C 0.704 3.296 12 O -0.632 6.632 13 N -0.727 5.727 14 C 0.140 3.860 15 C 0.435 3.565 16 O -0.623 6.623 17 N -0.559 5.559 18 C -0.336 4.336 19 H 0.087 0.913 20 C -0.012 4.012 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.107 3.893 27 C -0.124 4.124 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.408 0.592 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.399 0.601 49 H 0.280 0.720 50 H 0.088 0.912 51 H 0.072 0.928 52 H 0.093 0.907 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 27.266 0.895 30.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 C -0.198 4.198 4 N -0.263 5.263 5 C -0.127 4.127 6 C -0.067 4.067 7 C -0.090 4.090 8 C -0.144 4.144 9 C 0.005 3.995 10 N -0.360 5.360 11 C 0.405 3.595 12 O -0.514 6.514 13 N -0.387 5.387 14 C 0.012 3.988 15 C 0.222 3.778 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.465 4.465 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.016 4.016 27 C -0.163 4.163 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.249 0.751 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.233 0.767 49 H 0.089 0.911 50 H 0.107 0.893 51 H 0.090 0.910 52 H 0.112 0.888 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.063 27.325 0.940 29.884 hybrid contribution -0.847 -1.321 0.035 1.569 sum -12.909 26.004 0.975 29.048 Atomic orbital electron populations 1.22427 0.97297 1.01797 1.02630 1.21778 0.92863 0.95738 0.93325 1.21816 1.01480 0.94569 1.01926 1.62188 1.58759 1.02764 1.02621 1.22432 0.97277 1.00799 0.92231 1.22120 0.97193 0.87800 0.99588 1.21037 0.94345 0.94092 0.99482 1.21760 0.93949 1.01576 0.97127 1.21607 0.99115 0.78924 0.99863 1.47326 1.11620 1.06090 1.70995 1.15914 0.84540 0.80912 0.78124 1.90855 1.18215 1.84044 1.58336 1.44910 1.17268 1.03366 1.73141 1.20585 0.92130 0.83415 1.02700 1.20369 0.87558 0.85928 0.83977 1.90456 1.19055 1.87562 1.54087 1.41838 1.14493 1.04626 1.58466 1.19784 0.98388 0.83380 1.44990 0.89493 1.26148 0.96336 1.02838 0.95899 1.69692 1.10395 1.29987 1.45533 0.84793 0.78167 0.76636 0.78259 1.19377 1.19658 1.19661 1.21823 0.79964 1.00843 0.98924 1.21904 0.99455 0.95680 0.99221 0.91537 0.92927 0.92422 0.89969 0.92450 0.91642 0.92569 0.91869 0.90626 0.95312 0.93620 0.91641 0.90081 0.93602 0.88791 0.91192 0.90306 0.75100 0.89208 0.89221 0.76715 0.91083 0.89345 0.90968 0.88813 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.48 71.98 0.61 -1.09 16 2 C 0.07 0.73 2.83 44.92 0.13 0.86 16 3 C -0.14 -1.30 9.14 71.98 0.66 -0.64 16 4 N -0.54 -6.53 4.01 -897.05 -3.60 -10.12 16 5 C 0.02 0.22 8.50 127.69 1.09 1.31 16 6 C 0.06 0.77 4.28 86.30 0.37 1.14 16 7 C -0.07 -0.97 2.19 -10.75 -0.02 -1.00 16 8 C -0.11 -1.83 5.26 30.69 0.16 -1.67 16 9 C 0.13 2.76 6.41 86.36 0.55 3.31 16 10 N -0.62 -16.09 2.97 -836.93 -2.49 -18.58 16 11 C 0.70 24.31 8.30 179.05 1.49 25.80 16 12 O -0.63 -26.03 15.78 -3.99 -0.06 -26.10 16 13 N -0.73 -25.74 5.44 -482.30 -2.62 -28.37 16 14 C 0.14 5.42 6.16 85.63 0.53 5.94 16 15 C 0.43 20.46 7.85 87.66 0.69 21.15 16 16 O -0.62 -32.47 15.24 -3.07 -0.05 -32.52 16 17 N -0.56 -28.43 5.29 -306.98 -1.62 -30.06 16 18 C -0.34 -18.62 9.68 84.04 0.81 -17.80 16 19 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 22 Si 1.00 41.87 29.55 68.60 2.03 43.90 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 C 0.11 2.11 6.43 86.36 0.56 2.67 16 27 C -0.12 -1.93 5.36 30.67 0.16 -1.77 16 28 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.05 0.54 6.45 -2.39 -0.02 0.52 16 30 H 0.06 0.54 6.55 -2.39 -0.02 0.53 16 31 H 0.08 0.88 6.55 -2.39 -0.02 0.87 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.06 0.50 6.37 -2.39 -0.02 0.49 16 35 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 0.72 6.10 -2.38 -0.01 0.71 16 37 H 0.03 0.30 6.80 -2.39 -0.02 0.28 16 38 H 0.05 0.54 6.18 -2.39 -0.01 0.53 16 39 H 0.07 0.94 7.95 -2.39 -0.02 0.92 16 40 H 0.08 1.01 6.67 -2.39 -0.02 1.00 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.51 7.68 -2.39 -0.02 1.49 16 43 H 0.07 1.85 7.03 -2.39 -0.02 1.83 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.41 14.07 4.89 -92.71 -0.45 13.62 16 46 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 48 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 49 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 50 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 51 H 0.07 1.62 5.56 -2.39 -0.01 1.61 16 52 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 53 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.08 406.75 -0.15 -67.23 By element: Atomic # 1 Polarization: 45.48 SS G_CDS: -0.26 Total: 45.21 kcal Atomic # 6 Polarization: 29.83 SS G_CDS: 8.24 Total: 38.07 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -10.05 Total: -135.80 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -0.11 Total: -58.61 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -67.08 -0.15 -67.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563946320.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.857 kcal (2) G-P(sol) polarization free energy of solvation -67.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds