Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99981 * 2 1 4 4 C 1.52995 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47198 * 61.13867 * 4 3 2 6 6 C 1.36941 * 120.00026 * 264.10106 * 5 4 3 7 7 H 1.08000 * 119.99928 * 173.43920 * 6 5 4 8 8 C 1.38811 * 119.99485 * 353.44025 * 6 5 4 9 9 N 1.31613 * 120.00505 * 38.63407 * 8 6 5 10 10 Si 1.86813 * 119.99488 * 218.62948 * 8 6 5 11 11 H 1.48502 * 109.46988 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.46799 * 120.00151 * 10 8 6 13 13 H 1.48500 * 109.47025 * 240.00354 * 10 8 6 14 14 C 1.46503 * 120.00112 * 84.10015 * 5 4 3 15 15 C 1.53005 * 109.47029 * 86.74810 * 14 5 4 16 16 N 1.46499 * 109.46712 * 184.48366 * 15 14 5 17 17 C 1.34779 * 119.99530 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00064 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99787 * 180.02562 * 17 16 15 20 20 C 1.53241 * 110.83564 * 293.07529 * 19 17 16 21 21 C 1.55074 * 103.07769 * 90.93600 * 20 19 17 22 22 O 1.45037 * 107.08366 * 1.65739 * 21 20 19 23 23 C 1.42307 * 105.23231 * 26.99906 * 22 21 20 24 24 H 1.09006 * 109.43839 * 72.03988 * 23 22 21 25 25 C 1.51479 * 117.60888 * 198.01970 * 23 22 21 26 26 C 1.53761 * 107.35224 * 179.58205 * 25 23 22 27 27 C 1.52587 * 111.39272 * 302.54946 * 26 25 23 28 28 C 1.51853 * 110.76924 * 162.69002 * 19 17 16 29 29 H 1.08997 * 109.47163 * 299.99629 * 1 2 3 30 30 H 1.09003 * 109.47398 * 59.99573 * 1 2 3 31 31 H 1.08996 * 109.47296 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47273 * 300.00643 * 3 2 1 33 33 H 1.09001 * 109.46599 * 60.00369 * 3 2 1 34 34 H 1.09005 * 109.46959 * 181.13931 * 4 3 2 35 35 H 1.09000 * 109.47648 * 301.13564 * 4 3 2 36 36 H 0.96998 * 120.00190 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.47294 * 206.75034 * 14 5 4 38 38 H 1.09000 * 109.46992 * 326.75009 * 14 5 4 39 39 H 1.09000 * 109.47126 * 304.48996 * 15 14 5 40 40 H 1.09005 * 109.46582 * 64.48970 * 15 14 5 41 41 H 0.96998 * 120.00544 * 0.02562 * 16 15 14 42 42 H 1.09001 * 110.69275 * 209.33044 * 20 19 17 43 43 H 1.08994 * 110.69957 * 332.53561 * 20 19 17 44 44 H 1.09002 * 109.91123 * 242.30182 * 21 20 19 45 45 H 1.08992 * 109.91644 * 121.01891 * 21 20 19 46 46 H 1.09007 * 109.88228 * 299.04370 * 25 23 22 47 47 H 1.09001 * 109.88123 * 60.11880 * 25 23 22 48 48 H 1.08997 * 109.09728 * 63.04536 * 26 25 23 49 49 H 1.08997 * 109.09409 * 182.12706 * 26 25 23 50 50 H 1.09004 * 109.07344 * 175.26474 * 27 26 25 51 51 H 1.08992 * 109.07704 * 294.30117 * 27 26 25 52 52 H 1.09002 * 109.89566 * 63.09512 * 28 19 17 53 53 H 1.09000 * 109.89179 * 184.21040 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9691 0.4817 -1.2106 6 6 4.2065 -0.8664 -1.1713 7 1 4.4227 -1.4034 -2.0830 8 6 4.1693 -1.5425 0.0404 9 7 3.2650 -1.2265 0.9430 10 14 5.4027 -2.9013 0.3900 11 1 6.3069 -3.0613 -0.7771 12 1 6.2023 -2.5472 1.5901 13 1 4.6798 -4.1751 0.6349 14 6 4.1487 1.2209 -2.4626 15 6 5.5641 1.7998 -2.5145 16 7 5.7094 2.6273 -3.7146 17 6 6.8804 3.2436 -3.9704 18 8 7.8139 3.1128 -3.2072 19 6 7.0298 4.0954 -5.2046 20 6 6.9595 3.2363 -6.4715 21 6 5.4492 3.2530 -6.8234 22 8 4.7917 4.0914 -5.8393 23 6 5.7885 5.0090 -5.4041 24 1 5.9878 5.7309 -6.1962 25 6 5.5493 5.7381 -4.0980 26 6 6.7631 6.6495 -3.8525 27 6 8.0623 5.8499 -3.8218 28 6 8.2352 5.0111 -5.0842 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6885 1.8465 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 3.9787 2.1803 0.0198 35 1 3.8561 0.6261 0.8787 36 1 3.2388 -1.6992 1.7895 37 1 4.0004 0.5475 -3.3067 38 1 3.4224 2.0321 -2.5130 39 1 5.7398 2.4101 -1.6287 40 1 6.2885 0.9858 -2.5445 41 1 4.9627 2.7323 -4.3248 42 1 7.5467 3.6837 -7.2734 43 1 7.2961 2.2200 -6.2671 44 1 5.0462 2.2412 -6.7777 45 1 5.3049 3.6682 -7.8207 46 1 4.6428 6.3393 -4.1697 47 1 5.4549 5.0192 -3.2841 48 1 6.8193 7.3908 -4.6495 49 1 6.6377 7.1609 -2.8982 50 1 8.9023 6.5385 -3.7306 51 1 8.0512 5.1853 -2.9581 52 1 9.1467 4.4174 -5.0147 53 1 8.2869 5.6719 -5.9496 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755839417.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -102.476982 kcal Electronic energy + Delta-G solvation = -32342.779532 eV Core-core repulsion = 28215.373538 eV Total energy + Delta-G solvation = -4127.405994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.60790 -39.52425 -38.70680 -37.52565 -37.00286 -35.55487 -33.72059 -33.24833 -31.20734 -30.61733 -29.73382 -28.96514 -26.89907 -25.73041 -24.44570 -23.90629 -23.33320 -22.78496 -21.79909 -21.74811 -20.43500 -18.73417 -17.92181 -17.44498 -17.09099 -16.90630 -16.79180 -16.39892 -16.27813 -16.11506 -15.92277 -15.49328 -15.34474 -15.19558 -15.01615 -14.82321 -14.57327 -14.24079 -13.93565 -13.75413 -13.68735 -13.09680 -13.05587 -12.99095 -12.95518 -12.73965 -12.69562 -12.43959 -12.31221 -12.22074 -12.13894 -12.11116 -11.90096 -11.75624 -11.56841 -11.49655 -11.26370 -11.02806 -10.68075 -10.55094 -10.14183 -9.97227 -9.90451 -8.86213 -7.73739 -4.88334 1.45859 1.54939 1.61197 1.62359 2.20656 2.63217 2.66691 3.24139 3.49632 3.52151 3.54764 3.62570 3.81772 3.93504 4.01376 4.05392 4.19227 4.21525 4.22890 4.31589 4.36003 4.43279 4.52013 4.52926 4.60554 4.66204 4.73100 4.74509 4.80809 4.83678 4.85359 4.89685 4.91712 4.97547 5.00755 5.02754 5.05252 5.07374 5.09249 5.17048 5.22881 5.23901 5.34706 5.48884 5.58551 5.76543 5.82804 5.85063 6.38021 6.66209 7.00639 7.26314 7.33408 8.00291 8.41627 9.24150 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.003196 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.545028 B = 8759.830857 C = 9440.003140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.332 6.332 3 C 0.066 3.934 4 C 0.147 3.853 5 N -0.596 5.596 6 C -0.278 4.278 7 H 0.065 0.935 8 C -0.013 4.013 9 N -0.840 5.840 10 Si 0.901 3.099 11 H -0.283 1.283 12 H -0.296 1.296 13 H -0.299 1.299 14 C 0.157 3.843 15 C 0.115 3.885 16 N -0.711 5.711 17 C 0.524 3.476 18 O -0.585 6.585 19 C -0.117 4.117 20 C -0.137 4.137 21 C 0.038 3.962 22 O -0.384 6.384 23 C 0.088 3.912 24 H 0.105 0.895 25 C -0.124 4.124 26 C -0.108 4.108 27 C -0.136 4.136 28 C -0.083 4.083 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.241 0.759 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.412 0.588 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.045 0.955 48 H 0.091 0.909 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.041 0.959 52 H 0.060 0.940 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 17.828 -16.657 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C -0.014 4.014 4 C 0.021 3.979 5 N -0.318 5.318 6 C -0.406 4.406 7 H 0.083 0.917 8 C -0.212 4.212 9 N -0.482 5.482 10 Si 0.731 3.269 11 H -0.209 1.209 12 H -0.224 1.224 13 H -0.227 1.227 14 C 0.029 3.971 15 C -0.012 4.012 16 N -0.366 5.366 17 C 0.312 3.688 18 O -0.466 6.466 19 C -0.121 4.121 20 C -0.175 4.175 21 C -0.037 4.037 22 O -0.303 6.303 23 C 0.030 3.970 24 H 0.123 0.877 25 C -0.161 4.161 26 C -0.146 4.146 27 C -0.173 4.173 28 C -0.121 4.121 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.253 0.747 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.087 0.913 50 H 0.098 0.902 51 H 0.060 0.940 52 H 0.079 0.921 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.198 17.465 -15.883 23.823 hybrid contribution 0.263 -1.158 0.613 1.336 sum 3.461 16.307 -15.270 22.607 Atomic orbital electron populations 1.22713 0.84762 1.01388 0.98589 1.88716 1.15998 1.25604 1.94497 1.22804 0.97116 0.85077 0.96401 1.21298 0.90921 0.93960 0.91691 1.43957 1.77649 1.04380 1.05824 1.19015 1.43393 0.85248 0.92961 0.91748 1.25060 0.99030 0.99323 0.97792 1.70637 1.27583 1.42035 1.07948 0.86231 0.82819 0.80609 0.77282 1.20896 1.22369 1.22710 1.20750 0.92503 0.94969 0.88853 1.21865 1.00067 0.92756 0.86528 1.46272 1.15083 1.49062 1.26228 1.20772 0.81777 0.79290 0.86993 1.90640 1.40854 1.64223 1.50854 1.22223 1.00867 0.96042 0.92951 1.22820 0.98115 1.00459 0.96078 1.23871 0.90710 0.95966 0.93202 1.88726 1.34925 1.47689 1.58961 1.22752 0.84593 0.91677 0.97967 0.87747 1.21574 1.00340 0.99015 0.95189 1.21482 0.92212 0.97597 1.03268 1.21534 0.98579 0.98882 0.98342 1.21017 0.95165 0.96434 0.99483 0.94860 0.95148 0.91128 0.96114 0.95246 0.94152 0.90198 0.94859 0.93020 0.92760 0.94142 0.94448 0.74738 0.86243 0.91192 0.89190 0.88421 0.89358 0.93616 0.89037 0.91333 0.90240 0.94042 0.92121 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.87 11.01 113.37 1.25 2.12 16 2 O -0.33 -16.00 7.59 -148.98 -1.13 -17.13 16 3 C 0.07 2.83 6.26 71.98 0.45 3.29 16 4 C 0.15 6.92 5.59 86.38 0.48 7.40 16 5 N -0.60 -29.06 2.45 -702.00 -1.72 -30.78 16 6 C -0.28 -15.28 9.34 84.03 0.79 -14.49 16 7 H 0.06 3.59 8.01 -2.91 -0.02 3.56 16 8 C -0.01 -0.70 4.81 84.86 0.41 -0.29 16 9 N -0.84 -47.43 8.09 21.65 0.18 -47.26 16 10 Si 0.90 45.24 29.69 68.60 2.04 47.27 16 11 H -0.28 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 13 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 14 C 0.16 6.25 5.81 86.38 0.50 6.75 16 15 C 0.11 4.46 6.00 86.38 0.52 4.98 16 16 N -0.71 -22.25 4.72 -463.05 -2.19 -24.44 16 17 C 0.52 16.24 4.49 87.66 0.39 16.64 16 18 O -0.59 -23.23 14.41 -3.02 -0.04 -23.28 16 19 C -0.12 -2.40 0.71 -52.39 -0.04 -2.43 16 20 C -0.14 -2.09 6.22 31.39 0.20 -1.90 16 21 C 0.04 0.54 7.22 72.69 0.53 1.07 16 22 O -0.38 -7.40 9.28 -148.98 -1.38 -8.78 16 23 C 0.09 1.52 2.40 30.93 0.07 1.59 16 24 H 0.10 1.22 7.96 -2.38 -0.02 1.21 16 25 C -0.12 -2.38 5.78 30.35 0.18 -2.20 16 26 C -0.11 -1.75 5.85 30.71 0.18 -1.57 16 27 C -0.14 -2.74 5.53 30.31 0.17 -2.57 16 28 C -0.08 -1.50 4.75 30.07 0.14 -1.36 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 1.72 8.12 -2.38 -0.02 1.70 16 35 H 0.08 4.31 5.31 -2.39 -0.01 4.30 16 36 H 0.24 13.43 8.31 -92.71 -0.77 12.66 16 37 H 0.05 2.04 7.98 -2.39 -0.02 2.02 16 38 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.41 11.36 5.50 -92.71 -0.51 10.85 16 42 H 0.12 1.09 8.05 -2.39 -0.02 1.07 16 43 H 0.07 1.30 7.91 -2.39 -0.02 1.28 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 47 H 0.05 1.19 6.25 -2.39 -0.01 1.17 16 48 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 51 H 0.04 1.20 5.85 -2.39 -0.01 1.19 16 52 H 0.06 1.28 8.07 -2.39 -0.02 1.26 16 53 H 0.11 1.13 8.02 -2.39 -0.02 1.11 16 Total: -1.00 -69.67 398.48 2.33 -67.34 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.37 Total: 20.03 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.21 Total: 17.02 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.73 Total: -102.48 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -2.56 Total: -49.19 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.04 Total: 47.27 kcal Total: -69.67 2.33 -67.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755839417.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.135 kcal (2) G-P(sol) polarization free energy of solvation -69.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds