Wall clock time and date at job start Sat Apr 11 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47493 * 2 1 4 4 H 1.08999 * 109.47025 * 54.99779 * 3 2 1 5 5 C 1.52994 * 109.47314 * 174.99983 * 3 2 1 6 6 N 1.46496 * 109.47246 * 295.00363 * 3 2 1 7 7 C 1.34777 * 120.00249 * 154.99741 * 6 3 2 8 8 O 1.21284 * 119.99713 * 359.97438 * 7 6 3 9 9 C 1.50701 * 119.99975 * 180.02562 * 7 6 3 10 10 C 1.53007 * 109.46924 * 179.97438 * 9 7 6 11 11 N 1.46500 * 109.46896 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99947 * 180.02562 * 11 10 9 13 13 O 1.21587 * 119.99456 * 354.92000 * 12 11 10 14 14 N 1.34773 * 120.00341 * 174.92371 * 12 11 10 15 15 C 1.47077 * 120.88281 * 184.71965 * 14 12 11 16 16 C 1.53695 * 108.27944 * 128.75043 * 15 14 12 17 17 N 1.46897 * 109.25645 * 54.08029 * 16 15 14 18 18 C 1.46898 * 111.00235 * 172.61106 * 17 16 15 19 19 C 1.50700 * 109.46909 * 294.30087 * 18 17 16 20 20 H 1.08006 * 120.00160 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00319 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99436 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99996 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47512 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46993 * 120.00276 * 23 21 19 26 26 H 1.48503 * 109.47086 * 240.00073 * 23 21 19 27 27 C 1.46901 * 111.26982 * 296.75923 * 17 16 15 28 28 C 1.47080 * 120.87650 * 4.98790 * 14 12 11 29 29 H 1.09003 * 109.47341 * 59.99407 * 1 2 3 30 30 H 1.08996 * 109.47172 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46599 * 299.99949 * 1 2 3 32 32 H 1.09000 * 109.47057 * 240.00324 * 2 1 3 33 33 H 1.08993 * 109.47255 * 120.00424 * 2 1 3 34 34 H 1.08998 * 109.47480 * 300.00508 * 5 3 2 35 35 H 1.08998 * 109.46971 * 60.00405 * 5 3 2 36 36 H 1.09004 * 109.47289 * 179.97438 * 5 3 2 37 37 H 0.97002 * 119.99864 * 335.00162 * 6 3 2 38 38 H 1.08994 * 109.47363 * 299.99869 * 9 7 6 39 39 H 1.09001 * 109.47487 * 60.00263 * 9 7 6 40 40 H 1.08994 * 109.47195 * 300.00219 * 10 9 7 41 41 H 1.09001 * 109.46622 * 59.99980 * 10 9 7 42 42 H 0.96997 * 120.00344 * 0.02562 * 11 10 9 43 43 H 1.09003 * 109.62655 * 248.51740 * 15 14 12 44 44 H 1.09000 * 109.63070 * 9.09710 * 15 14 12 45 45 H 1.09001 * 109.64593 * 294.08302 * 16 15 14 46 46 H 1.09002 * 109.42443 * 173.94605 * 16 15 14 47 47 H 1.08994 * 109.47340 * 54.29800 * 18 17 16 48 48 H 1.08999 * 109.47487 * 174.30445 * 18 17 16 49 49 H 0.97006 * 119.99633 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.49130 * 303.14391 * 27 17 16 51 51 H 1.08999 * 109.49191 * 183.06713 * 27 17 16 52 52 H 1.08995 * 109.63299 * 350.90045 * 28 14 12 53 53 H 1.09006 * 109.62449 * 111.48306 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 7 1.6525 2.0975 -1.2517 7 6 1.5257 3.4385 -1.2995 8 8 1.7321 4.1028 -0.3060 9 6 1.1265 4.1122 -2.5870 10 6 1.0547 5.6251 -2.3700 11 7 0.6671 6.2801 -3.6218 12 6 0.5405 7.6211 -3.6696 13 8 0.6570 8.2792 -2.6539 14 7 0.2846 8.2324 -4.8431 15 6 0.2446 9.6997 -4.9370 16 6 1.1578 10.1337 -6.0945 17 7 0.7613 9.4226 -7.3172 18 6 1.4914 9.9350 -8.4844 19 6 1.0855 11.3629 -8.7437 20 1 0.3581 11.8421 -8.1050 21 6 1.6433 12.0581 -9.7957 22 7 2.5292 11.4748 -10.5731 23 14 1.1395 13.8278 -10.1175 24 1 0.1344 14.2478 -9.1082 25 1 2.3325 14.7071 -10.0229 26 1 0.5515 13.9358 -11.4769 27 6 0.9479 7.9725 -7.1746 28 6 0.0321 7.4499 -6.0626 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8533 0.9569 1.0570 35 1 3.9994 0.9053 -0.7161 36 1 3.9283 2.4719 0.1253 37 1 1.4871 1.5661 -2.0462 38 1 1.8646 3.8900 -3.3575 39 1 0.1501 3.7441 -2.9022 40 1 0.3163 5.8470 -1.5996 41 1 2.0308 5.9936 -2.0546 42 1 0.5017 5.7488 -4.4163 43 1 -0.7772 10.0265 -5.1304 44 1 0.6012 10.1362 -4.0041 45 1 2.1935 9.8938 -5.8539 46 1 1.0596 11.2080 -6.2505 47 1 2.5631 9.8915 -8.2905 48 1 1.2550 9.3259 -9.3570 49 1 2.9214 11.9638 -11.3135 50 1 1.9865 7.7628 -6.9190 51 1 0.6974 7.4795 -8.1139 52 1 0.2483 6.3983 -5.8743 53 1 -1.0097 7.5646 -6.3621 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601564175.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:23 Heat of formation + Delta-G solvation = -92.054713 kcal Electronic energy + Delta-G solvation = -29519.712723 eV Core-core repulsion = 25425.051424 eV Total energy + Delta-G solvation = -4094.661299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51555 -40.88915 -39.13338 -37.57270 -36.25719 -35.97481 -34.38277 -33.48298 -32.34924 -31.54770 -30.56553 -29.73305 -27.24461 -25.59626 -24.65287 -24.19531 -23.80548 -22.18735 -21.90350 -21.48325 -20.53572 -19.14810 -18.49522 -18.21531 -17.28531 -17.14537 -17.03104 -16.71333 -16.33532 -15.98746 -15.75446 -15.42191 -15.30565 -15.16310 -15.03161 -14.90505 -14.56886 -14.51097 -14.28110 -14.16229 -13.96022 -13.53789 -13.25329 -13.09603 -12.89613 -12.73088 -12.66626 -12.58859 -12.46176 -12.34817 -12.29043 -12.24591 -12.14506 -11.94628 -11.74557 -11.61907 -11.39620 -11.19159 -10.89788 -10.61391 -10.31100 -10.07784 -9.59816 -9.02384 -8.20170 -6.29385 1.42243 1.43476 1.49159 1.56592 1.63999 2.08190 2.24710 2.41490 2.92056 3.12634 3.25000 3.64288 3.77239 3.96235 4.01715 4.06544 4.08171 4.12949 4.18591 4.20351 4.27521 4.46240 4.49207 4.53323 4.58028 4.65204 4.74162 4.75813 4.85512 4.85590 4.87504 4.92982 4.96378 5.00316 5.04381 5.14870 5.18698 5.19331 5.24946 5.27964 5.41360 5.42818 5.45788 5.59258 5.65361 5.92234 6.05004 6.26948 6.57908 6.60588 6.86514 6.93342 7.29186 7.40427 7.50474 8.91000 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.028130 B = 0.001626 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.129848 B =17218.762687 C =17509.791744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.137 3.863 4 H 0.061 0.939 5 C -0.161 4.161 6 N -0.709 5.709 7 C 0.515 3.485 8 O -0.588 6.588 9 C -0.139 4.139 10 C 0.158 3.842 11 N -0.730 5.730 12 C 0.703 3.297 13 O -0.637 6.637 14 N -0.628 5.628 15 C 0.145 3.855 16 C 0.058 3.942 17 N -0.537 5.537 18 C 0.208 3.792 19 C -0.523 4.523 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.278 1.278 27 C 0.036 3.964 28 C 0.126 3.874 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.418 0.582 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.413 0.587 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.009 0.991 46 H 0.079 0.921 47 H -0.042 1.042 48 H 0.014 0.986 49 H 0.264 0.736 50 H 0.019 0.981 51 H 0.092 0.908 52 H 0.115 0.885 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -28.491 15.969 32.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.032 3.968 4 H 0.080 0.920 5 C -0.220 4.220 6 N -0.362 5.362 7 C 0.301 3.699 8 O -0.468 6.468 9 C -0.178 4.178 10 C 0.033 3.967 11 N -0.389 5.389 12 C 0.404 3.596 13 O -0.519 6.519 14 N -0.364 5.364 15 C 0.021 3.979 16 C -0.072 4.072 17 N -0.262 5.262 18 C 0.082 3.918 19 C -0.561 4.561 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.574 5.574 23 Si 0.792 3.208 24 H -0.187 1.187 25 H -0.208 1.208 26 H -0.204 1.204 27 C -0.093 4.093 28 C 0.004 3.996 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.255 0.745 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.253 0.747 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.027 0.973 46 H 0.097 0.903 47 H -0.024 1.024 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.037 0.963 51 H 0.111 0.889 52 H 0.133 0.867 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.581 -27.486 17.186 32.739 hybrid contribution 1.071 0.752 -0.916 1.598 sum -3.509 -26.734 16.270 31.492 Atomic orbital electron populations 1.21788 0.95422 1.02221 1.01746 1.21787 0.96304 0.93543 1.04361 1.21031 0.94878 0.94163 0.86715 0.92044 1.22150 0.95299 1.01249 1.03259 1.45962 1.69700 1.06148 1.14425 1.20802 0.76010 0.82878 0.90161 1.90756 1.52054 1.65238 1.38738 1.21752 1.07220 0.92642 0.96222 1.20695 0.99702 0.91576 0.84766 1.44968 1.74848 1.04333 1.14763 1.15991 0.77699 0.82815 0.83088 1.90884 1.60641 1.65680 1.34702 1.47415 1.73979 1.07274 1.07781 1.21581 1.00238 0.78583 0.97520 1.22354 0.95275 0.99820 0.89708 1.61994 1.57762 1.03226 1.03242 1.19385 0.89500 0.95126 0.87824 1.21516 1.23715 0.97775 1.13104 0.91698 1.25871 0.94965 1.02933 0.95768 1.70082 1.29897 1.38894 1.18556 0.85362 0.78121 0.79080 0.78225 1.18690 1.20813 1.20362 1.22555 0.97433 0.89333 0.99965 1.21906 1.00353 0.95320 0.82056 0.92322 0.91531 0.93949 0.89523 0.89699 0.90661 0.90978 0.94816 0.74481 0.85045 0.84587 0.93143 0.93784 0.74706 0.90186 0.90019 0.97319 0.90289 1.02420 0.96828 0.92752 0.96277 0.88940 0.86677 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.80 71.98 0.71 -0.19 16 2 C -0.12 -0.58 5.47 30.59 0.17 -0.41 16 3 C 0.14 1.42 2.57 44.99 0.12 1.54 16 4 H 0.06 1.00 7.58 -2.39 -0.02 0.99 16 5 C -0.16 -1.75 9.48 71.98 0.68 -1.07 16 6 N -0.71 -6.21 4.53 -442.54 -2.00 -8.22 16 7 C 0.51 8.04 7.79 87.66 0.68 8.73 16 8 O -0.59 -15.89 15.64 -3.04 -0.05 -15.94 16 9 C -0.14 -1.32 5.81 29.85 0.17 -1.15 16 10 C 0.16 3.27 4.97 86.38 0.43 3.70 16 11 N -0.73 -14.87 5.47 -478.53 -2.62 -17.49 16 12 C 0.70 21.57 8.31 179.06 1.49 23.06 16 13 O -0.64 -25.68 15.83 -3.99 -0.06 -25.75 16 14 N -0.63 -18.32 3.00 -835.05 -2.51 -20.83 16 15 C 0.14 4.82 6.61 86.50 0.57 5.39 16 16 C 0.06 2.27 5.47 86.54 0.47 2.74 16 17 N -0.54 -22.01 4.62 -898.90 -4.15 -26.17 16 18 C 0.21 10.73 4.72 85.56 0.40 11.13 16 19 C -0.52 -28.99 8.41 25.60 0.22 -28.78 16 20 H 0.06 3.53 7.13 -2.91 -0.02 3.51 16 21 C 0.00 0.15 5.46 84.66 0.46 0.61 16 22 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 23 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.04 1.12 5.62 86.38 0.49 1.61 16 28 C 0.13 2.84 6.59 86.35 0.57 3.41 16 29 H 0.06 0.31 7.75 -2.39 -0.02 0.29 16 30 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.42 0.69 8.60 -92.71 -0.80 -0.11 16 38 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 41 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 42 H 0.41 5.02 5.97 -92.71 -0.55 4.46 16 43 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.08 2.86 7.09 -2.39 -0.02 2.84 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.08 3.36 6.67 -2.39 -0.02 3.34 16 47 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 48 H 0.01 0.74 7.97 -2.39 -0.02 0.72 16 49 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 50 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.09 2.66 7.99 -2.39 -0.02 2.64 16 52 H 0.12 1.53 5.63 -2.39 -0.01 1.51 16 53 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -82.37 421.20 -1.91 -84.28 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -0.45 Total: 8.94 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 7.63 Total: 30.33 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -11.00 Total: -127.80 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.11 Total: -41.68 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -82.37 -1.91 -84.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601564175.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.771 kcal (2) G-P(sol) polarization free energy of solvation -82.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds