Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47055 * 2 1 4 4 H 1.09002 * 109.46918 * 55.00181 * 3 2 1 5 5 C 1.53000 * 109.47128 * 174.99994 * 3 2 1 6 6 N 1.46498 * 109.47221 * 295.00024 * 3 2 1 7 7 C 1.34775 * 119.99750 * 154.99856 * 6 3 2 8 8 O 1.21281 * 120.00410 * 0.02562 * 7 6 3 9 9 C 1.50704 * 119.99650 * 180.02562 * 7 6 3 10 10 H 1.08998 * 109.47348 * 60.00116 * 9 7 6 11 11 C 1.53001 * 109.47204 * 300.00020 * 9 7 6 12 12 N 1.46495 * 109.46924 * 179.97438 * 9 7 6 13 13 C 1.34778 * 120.00011 * 204.99745 * 12 9 7 14 14 O 1.21584 * 119.99833 * 5.08876 * 13 12 9 15 15 N 1.34775 * 120.00087 * 185.08543 * 13 12 9 16 16 C 1.47079 * 120.88045 * 354.71680 * 15 13 12 17 17 C 1.53702 * 108.27710 * 128.75345 * 16 15 13 18 18 N 1.46899 * 109.25438 * 54.08373 * 17 16 15 19 19 C 1.46906 * 111.00042 * 172.60612 * 18 17 16 20 20 C 1.50696 * 109.47164 * 294.30398 * 19 18 17 21 21 H 1.08002 * 120.00280 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00050 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99739 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00113 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47269 * 119.99835 * 24 22 20 27 27 H 1.48500 * 109.47615 * 240.00010 * 24 22 20 28 28 C 1.46895 * 111.27012 * 296.75777 * 18 17 16 29 29 C 1.47076 * 120.88419 * 174.99347 * 15 13 12 30 30 H 1.08997 * 109.46599 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47084 * 299.99903 * 1 2 3 32 32 H 1.09001 * 109.47065 * 60.00100 * 1 2 3 33 33 H 1.09002 * 109.47084 * 240.00097 * 2 1 3 34 34 H 1.09001 * 109.47065 * 119.99900 * 2 1 3 35 35 H 1.08998 * 109.47029 * 180.02562 * 5 3 2 36 36 H 1.09006 * 109.47300 * 299.99946 * 5 3 2 37 37 H 1.08999 * 109.47503 * 60.00031 * 5 3 2 38 38 H 0.96998 * 119.99914 * 334.99800 * 6 3 2 39 39 H 1.09006 * 109.47171 * 60.00057 * 11 9 7 40 40 H 1.08998 * 109.47202 * 180.02562 * 11 9 7 41 41 H 1.08998 * 109.47047 * 300.00280 * 11 9 7 42 42 H 0.97007 * 120.00278 * 25.00381 * 12 9 7 43 43 H 1.09008 * 109.63157 * 248.52168 * 16 15 13 44 44 H 1.09003 * 109.63249 * 9.10398 * 16 15 13 45 45 H 1.09001 * 109.65035 * 294.08013 * 17 16 15 46 46 H 1.08996 * 109.44201 * 173.95866 * 17 16 15 47 47 H 1.09000 * 109.46796 * 54.30029 * 19 18 17 48 48 H 1.08999 * 109.47145 * 174.30305 * 19 18 17 49 49 H 0.97003 * 120.00281 * 180.02562 * 23 22 20 50 50 H 1.09008 * 109.49345 * 303.14283 * 28 18 17 51 51 H 1.08998 * 109.49416 * 183.06597 * 28 18 17 52 52 H 1.09003 * 109.62827 * 350.89810 * 29 15 13 53 53 H 1.09000 * 109.62647 * 111.47534 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7327 4.1029 -0.3063 9 6 1.1263 4.1122 -2.5870 10 1 0.1501 3.7440 -2.9023 11 6 2.1626 3.8002 -3.6686 12 7 1.0575 5.5607 -2.3793 13 6 0.2711 6.3182 -3.1693 14 8 -0.4512 5.7908 -3.9930 15 7 0.2852 7.6602 -3.0463 16 6 1.0624 8.3125 -1.9815 17 6 1.9419 9.3979 -2.6226 18 7 1.0966 10.3004 -3.4156 19 6 1.8680 11.4519 -3.9025 20 6 2.3056 12.2945 -2.7323 21 1 2.0371 12.0040 -1.7273 22 6 3.0486 13.4364 -2.9445 23 7 3.3751 13.7904 -4.1682 24 14 3.5904 14.4812 -1.4939 25 1 3.0977 13.8710 -0.2329 26 1 5.0733 14.5530 -1.4620 27 1 3.0315 15.8499 -1.6335 28 6 0.4545 9.5884 -4.5285 29 6 -0.4810 8.5111 -3.9694 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9281 2.4721 0.1262 36 1 3.8532 0.9571 1.0572 37 1 3.9995 0.9054 -0.7161 38 1 1.4871 1.5661 -2.0462 39 1 2.2134 2.7223 -3.8230 40 1 1.8741 4.2879 -4.5997 41 1 3.1389 4.1684 -3.3533 42 1 1.5781 5.9747 -1.6731 43 1 0.3844 8.7661 -1.2585 44 1 1.6927 7.5753 -1.4841 45 1 2.6848 8.9324 -3.2703 46 1 2.4459 9.9653 -1.8402 47 1 2.7455 11.0986 -4.4440 48 1 1.2464 12.0501 -4.5687 49 1 3.8982 14.5935 -4.3176 50 1 1.2181 9.1202 -5.1498 51 1 -0.1206 10.2939 -5.1281 52 1 -0.8717 7.9052 -4.7869 53 1 -1.3045 8.9834 -3.4338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601564966.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -84.822594 kcal Electronic energy + Delta-G solvation = -30563.131843 eV Core-core repulsion = 26468.784152 eV Total energy + Delta-G solvation = -4094.347691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81301 -40.86725 -39.14277 -37.59364 -36.13836 -35.96269 -34.45081 -33.58714 -32.29400 -31.33806 -30.47678 -29.74719 -27.23395 -25.80309 -24.75930 -24.57689 -23.80253 -22.46295 -21.77689 -21.37011 -20.74861 -19.48507 -18.49508 -17.92764 -17.70503 -17.08085 -16.71302 -16.62261 -16.26112 -16.00384 -15.96846 -15.43848 -15.34050 -15.11563 -14.85966 -14.75571 -14.60289 -14.44289 -14.30971 -14.07979 -13.72497 -13.54415 -13.37784 -13.20647 -13.01629 -12.80912 -12.69066 -12.63866 -12.59858 -12.40063 -12.30729 -12.25979 -12.13134 -11.95273 -11.78406 -11.62042 -11.28208 -11.26493 -10.97226 -10.62354 -10.35317 -10.14947 -9.66171 -9.04767 -8.20266 -6.30168 1.40607 1.42362 1.43478 1.47336 1.56656 1.98975 2.17597 2.40974 2.79488 3.12174 3.22549 3.54846 3.80776 3.91063 4.00010 4.03802 4.06730 4.12301 4.16438 4.19893 4.23520 4.42328 4.47956 4.50745 4.61919 4.64320 4.72519 4.76257 4.76524 4.84558 4.85946 4.92992 5.00010 5.01039 5.12795 5.15521 5.16929 5.18467 5.23031 5.29850 5.34436 5.40592 5.42445 5.52869 5.64156 5.85665 6.03278 6.26793 6.44449 6.56398 6.81436 6.86004 7.12232 7.39637 7.42496 8.91154 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.002172 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.595625 B =12890.434853 C =13920.139902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C 0.138 3.862 4 H 0.065 0.935 5 C -0.161 4.161 6 N -0.703 5.703 7 C 0.517 3.483 8 O -0.571 6.571 9 C 0.142 3.858 10 H 0.116 0.884 11 C -0.152 4.152 12 N -0.729 5.729 13 C 0.712 3.288 14 O -0.623 6.623 15 N -0.627 5.627 16 C 0.126 3.874 17 C 0.054 3.946 18 N -0.538 5.538 19 C 0.208 3.792 20 C -0.520 4.520 21 H 0.068 0.932 22 C 0.000 4.000 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.281 1.281 28 C 0.043 3.957 29 C 0.146 3.854 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.416 0.584 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.407 0.593 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.015 0.985 46 H 0.085 0.915 47 H -0.040 1.040 48 H 0.008 0.992 49 H 0.264 0.736 50 H 0.016 0.984 51 H 0.085 0.915 52 H 0.094 0.906 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -30.910 6.537 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C 0.034 3.966 4 H 0.084 0.916 5 C -0.219 4.219 6 N -0.355 5.355 7 C 0.303 3.697 8 O -0.450 6.450 9 C 0.033 3.967 10 H 0.133 0.867 11 C -0.211 4.211 12 N -0.388 5.388 13 C 0.414 3.586 14 O -0.504 6.504 15 N -0.363 5.363 16 C 0.003 3.997 17 C -0.075 4.075 18 N -0.263 5.263 19 C 0.082 3.918 20 C -0.558 4.558 21 H 0.086 0.914 22 C -0.198 4.198 23 N -0.576 5.576 24 Si 0.795 3.205 25 H -0.184 1.184 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.086 4.086 29 C 0.023 3.977 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.254 0.746 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.246 0.754 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.034 0.966 46 H 0.103 0.897 47 H -0.022 1.022 48 H 0.026 0.974 49 H 0.073 0.927 50 H 0.034 0.966 51 H 0.103 0.897 52 H 0.112 0.888 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.519 -30.547 6.874 31.509 hybrid contribution 1.282 0.949 -0.298 1.623 sum -2.237 -29.598 6.576 30.403 Atomic orbital electron populations 1.21803 0.95684 1.02262 1.01607 1.21805 0.96080 0.93539 1.04591 1.21112 0.95249 0.94119 0.86124 0.91639 1.22149 0.94798 1.01532 1.03408 1.45903 1.69254 1.05602 1.14790 1.20627 0.76301 0.83444 0.89369 1.90703 1.51768 1.65015 1.37544 1.20719 1.02739 0.80065 0.93191 0.86673 1.22127 0.97637 1.04107 0.97239 1.45001 1.49146 1.06951 1.37677 1.15764 0.80230 0.81313 0.81316 1.90846 1.45970 1.72396 1.41235 1.47390 1.51451 1.03665 1.33833 1.21901 0.94311 0.94322 0.89134 1.22396 0.93876 0.93415 0.97860 1.61994 1.33386 1.08410 1.22494 1.19390 0.89845 0.87767 0.94844 1.21485 1.32387 1.08082 0.93883 0.91388 1.25926 0.96169 0.99022 0.98673 1.70096 1.39584 1.25898 1.21993 0.85319 0.77702 0.78189 0.79308 1.18437 1.20622 1.20640 1.22477 0.97254 0.95959 0.92916 1.21525 0.93006 0.90068 0.93071 0.91404 0.93799 0.92831 0.89461 0.89233 0.94484 0.90407 0.90916 0.74625 0.87753 0.92319 0.92123 0.75385 0.89784 0.88575 0.96629 0.89719 1.02248 0.97435 0.92749 0.96554 0.89681 0.88766 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.80 71.98 0.71 -0.48 16 2 C -0.12 -0.69 5.47 30.60 0.17 -0.52 16 3 C 0.14 1.53 2.57 44.99 0.12 1.65 16 4 H 0.07 1.08 7.58 -2.39 -0.02 1.06 16 5 C -0.16 -1.73 9.48 71.98 0.68 -1.05 16 6 N -0.70 -7.95 4.42 -442.52 -1.96 -9.90 16 7 C 0.52 9.76 7.19 87.66 0.63 10.39 16 8 O -0.57 -15.28 15.50 -3.03 -0.05 -15.33 16 9 C 0.14 2.74 3.03 44.25 0.13 2.88 16 10 H 0.12 2.25 7.51 -2.39 -0.02 2.23 16 11 C -0.15 -2.35 9.38 71.98 0.68 -1.67 16 12 N -0.73 -18.37 4.87 -461.42 -2.25 -20.61 16 13 C 0.71 21.89 8.27 179.05 1.48 23.37 16 14 O -0.62 -21.97 15.45 -3.98 -0.06 -22.03 16 15 N -0.63 -19.38 3.00 -835.03 -2.51 -21.89 16 16 C 0.13 3.73 6.63 86.51 0.57 4.30 16 17 C 0.05 2.01 5.47 86.54 0.47 2.49 16 18 N -0.54 -22.95 4.62 -898.88 -4.15 -27.10 16 19 C 0.21 11.00 4.72 85.55 0.40 11.41 16 20 C -0.52 -28.94 8.41 25.60 0.22 -28.72 16 21 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 22 C 0.00 0.00 5.46 84.66 0.46 0.46 16 23 N -0.94 -56.12 13.29 21.45 0.28 -55.83 16 24 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 C 0.04 1.58 5.62 86.38 0.49 2.06 16 29 C 0.15 4.59 6.58 86.35 0.57 5.16 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.44 7.75 -2.39 -0.02 0.42 16 33 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.65 8.14 -2.38 -0.02 0.64 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.42 2.22 8.02 -92.71 -0.74 1.48 16 39 H 0.10 0.82 7.56 -2.38 -0.02 0.81 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.41 10.15 5.29 -92.70 -0.49 9.66 16 43 H 0.08 2.41 8.14 -2.38 -0.02 2.40 16 44 H 0.10 2.38 5.63 -2.39 -0.01 2.37 16 45 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 3.37 6.67 -2.39 -0.02 3.36 16 47 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 48 H 0.01 0.43 7.97 -2.39 -0.02 0.41 16 49 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 51 H 0.08 3.02 7.99 -2.39 -0.02 3.00 16 52 H 0.09 2.89 7.10 -2.39 -0.02 2.87 16 53 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -73.57 418.56 -1.22 -74.79 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.33 Total: 20.27 kcal Atomic # 6 Polarization: 23.95 SS G_CDS: 7.77 Total: 31.73 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -10.58 Total: -135.33 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.11 Total: -37.36 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.57 -1.22 -74.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601564966.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.031 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds