Wall clock time and date at job start Sat Apr 11 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46769 * 2 1 4 4 H 1.08999 * 109.47487 * 305.00013 * 3 2 1 5 5 C 1.52997 * 109.47077 * 184.99899 * 3 2 1 6 6 N 1.46503 * 109.47482 * 64.99845 * 3 2 1 7 7 C 1.34776 * 120.00256 * 204.99587 * 6 3 2 8 8 O 1.21281 * 120.00162 * 0.02562 * 7 6 3 9 9 C 1.50699 * 119.99749 * 180.02562 * 7 6 3 10 10 H 1.08999 * 109.47081 * 299.99937 * 9 7 6 11 11 C 1.52997 * 109.47380 * 60.00077 * 9 7 6 12 12 N 1.46504 * 109.47001 * 180.02562 * 9 7 6 13 13 C 1.34776 * 120.00057 * 155.00060 * 12 9 7 14 14 O 1.21582 * 119.99827 * 4.96546 * 13 12 9 15 15 N 1.34775 * 119.99758 * 184.96949 * 13 12 9 16 16 C 1.47077 * 120.88103 * 354.79648 * 15 13 12 17 17 C 1.53239 * 108.52209 * 231.16028 * 16 15 13 18 18 N 1.46893 * 109.34114 * 306.17631 * 17 16 15 19 19 C 1.46904 * 111.00050 * 187.25283 * 18 17 16 20 20 C 1.50700 * 109.47522 * 170.00099 * 19 18 17 21 21 H 1.07997 * 119.99797 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00016 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00009 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00187 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47205 * 90.00057 * 24 22 20 26 26 H 1.48507 * 109.46959 * 210.00190 * 24 22 20 27 27 H 1.48500 * 109.46884 * 329.99981 * 24 22 20 28 28 C 1.46897 * 111.27283 * 63.10464 * 18 17 16 29 29 C 1.47084 * 120.87908 * 174.77500 * 15 13 12 30 30 H 1.08996 * 109.46730 * 299.99964 * 1 2 3 31 31 H 1.08998 * 109.47001 * 59.99862 * 1 2 3 32 32 H 1.09000 * 109.46603 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47180 * 240.00284 * 2 1 3 34 34 H 1.09000 * 109.47379 * 119.99757 * 2 1 3 35 35 H 1.09001 * 109.47236 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47418 * 299.99983 * 5 3 2 37 37 H 1.09004 * 109.47040 * 60.00274 * 5 3 2 38 38 H 0.97004 * 119.99486 * 24.99957 * 6 3 2 39 39 H 1.08992 * 109.47352 * 300.00374 * 11 9 7 40 40 H 1.09001 * 109.46624 * 59.99930 * 11 9 7 41 41 H 1.09003 * 109.47147 * 179.97438 * 11 9 7 42 42 H 0.96994 * 119.99690 * 334.99808 * 12 9 7 43 43 H 1.09000 * 109.62802 * 111.45907 * 16 15 13 44 44 H 1.08996 * 109.63298 * 350.87354 * 16 15 13 45 45 H 1.08999 * 109.49772 * 186.21019 * 17 16 15 46 46 H 1.09004 * 109.49045 * 66.13727 * 17 16 15 47 47 H 1.09000 * 109.46811 * 289.99908 * 19 18 17 48 48 H 1.09001 * 109.47246 * 49.99120 * 19 18 17 49 49 H 0.96995 * 120.00570 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.49471 * 56.85177 * 28 18 17 51 51 H 1.08997 * 109.49632 * 176.93996 * 28 18 17 52 52 H 1.08998 * 109.62553 * 9.13120 * 29 15 13 53 53 H 1.08998 * 109.62754 * 248.54628 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6524 2.0976 1.2518 7 6 1.5256 3.4385 1.2996 8 8 1.7319 4.1029 0.3061 9 6 1.1274 4.1122 2.5874 10 1 0.1514 3.7440 2.9035 11 6 2.1646 3.8004 3.6681 12 7 1.0584 5.5608 2.3796 13 6 0.2726 6.3183 3.1703 14 8 -0.3084 5.8143 4.1119 15 7 0.1309 7.6345 2.9171 16 6 0.9113 8.2872 1.8549 17 6 1.5889 9.5298 2.4422 18 7 0.5757 10.3804 3.0807 19 6 1.1556 11.6618 3.5050 20 6 0.0522 12.5974 3.9271 21 1 -0.9769 12.2728 3.8841 22 6 0.3566 13.8677 4.3682 23 7 -0.6064 14.6844 4.7361 24 14 2.1367 14.4289 4.4432 25 1 2.5129 15.0561 3.1509 26 1 2.2981 15.4180 5.5392 27 1 3.0142 13.2586 4.6995 28 6 -0.0630 9.6920 4.2103 29 6 -0.8085 8.4561 3.6954 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5138 0.8900 35 1 3.9281 2.4721 -0.1262 36 1 3.9995 0.9054 0.7161 37 1 3.8532 0.9571 -1.0571 38 1 1.4871 1.5661 2.0463 39 1 2.2156 2.7226 3.8225 40 1 3.1406 4.1686 3.3519 41 1 1.8768 4.2881 4.5994 42 1 1.5783 5.9747 1.6731 43 1 0.2479 8.5818 1.0417 44 1 1.6693 7.5987 1.4816 45 1 2.0814 10.0866 1.6450 46 1 2.3277 9.2251 3.1835 47 1 1.8312 11.4948 4.3439 48 1 1.7086 12.1027 2.6756 49 1 -0.3924 15.5782 5.0461 50 1 0.6987 9.3850 4.9270 51 1 -0.7687 10.3664 4.6953 52 1 -1.1873 7.8791 4.5390 53 1 -1.6371 8.7669 3.0591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601564967.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:34 Heat of formation + Delta-G solvation = -81.596586 kcal Electronic energy + Delta-G solvation = -30500.787050 eV Core-core repulsion = 26406.579249 eV Total energy + Delta-G solvation = -4094.207801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81484 -40.87163 -39.19257 -37.58894 -36.12586 -35.99270 -34.44489 -33.60102 -32.29821 -31.46183 -30.59406 -30.02893 -27.30709 -25.83909 -24.81420 -24.40183 -23.55932 -22.41469 -21.76639 -21.36372 -20.76981 -19.51669 -18.91698 -17.90473 -17.67938 -17.12594 -16.69395 -16.53369 -16.23759 -16.06667 -16.00359 -15.48450 -15.31760 -15.08629 -14.87706 -14.76008 -14.59342 -14.51222 -14.40358 -14.30395 -13.81583 -13.58746 -13.32162 -13.24290 -13.17499 -12.86157 -12.69246 -12.62443 -12.51029 -12.31094 -12.25581 -12.23310 -11.96403 -11.93995 -11.86111 -11.61744 -11.46787 -11.24934 -10.96994 -10.77124 -10.35601 -10.14377 -9.66855 -9.06022 -8.27274 -6.30750 1.35394 1.36824 1.38945 1.46965 1.47392 1.99637 2.18158 2.34783 2.81126 3.04648 3.14074 3.55165 3.81112 3.90746 4.01726 4.03460 4.06086 4.10800 4.14023 4.20129 4.23460 4.39192 4.48947 4.51252 4.63704 4.65027 4.68946 4.76205 4.76498 4.82379 4.83288 4.86469 4.93679 4.99897 5.00693 5.10436 5.13238 5.16833 5.19969 5.30381 5.34887 5.38776 5.42486 5.52382 5.53214 5.81145 5.99042 6.27622 6.44687 6.61061 6.75609 6.83773 7.12299 7.32656 7.43031 8.88986 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.001991 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.144841 B =14059.098540 C =14465.419566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.160 4.160 6 N -0.703 5.703 7 C 0.518 3.482 8 O -0.570 6.570 9 C 0.143 3.857 10 H 0.112 0.888 11 C -0.152 4.152 12 N -0.726 5.726 13 C 0.711 3.289 14 O -0.624 6.624 15 N -0.627 5.627 16 C 0.124 3.876 17 C 0.037 3.963 18 N -0.538 5.538 19 C 0.172 3.828 20 C -0.516 4.516 21 H 0.041 0.959 22 C 0.008 3.992 23 N -0.947 5.947 24 Si 0.947 3.053 25 H -0.263 1.263 26 H -0.284 1.284 27 H -0.254 1.254 28 C 0.058 3.942 29 C 0.145 3.855 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.416 0.584 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.408 0.592 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.028 0.972 47 H -0.015 1.015 48 H 0.035 0.965 49 H 0.266 0.734 50 H 0.019 0.981 51 H 0.074 0.926 52 H 0.090 0.910 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 -33.771 -9.154 36.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C 0.034 3.966 4 H 0.084 0.916 5 C -0.218 4.218 6 N -0.356 5.356 7 C 0.303 3.697 8 O -0.449 6.449 9 C 0.034 3.966 10 H 0.129 0.871 11 C -0.211 4.211 12 N -0.385 5.385 13 C 0.413 3.587 14 O -0.505 6.505 15 N -0.363 5.363 16 C 0.001 3.999 17 C -0.092 4.092 18 N -0.263 5.263 19 C 0.045 3.955 20 C -0.554 4.554 21 H 0.060 0.940 22 C -0.189 4.189 23 N -0.587 5.587 24 Si 0.771 3.229 25 H -0.188 1.188 26 H -0.210 1.210 27 H -0.178 1.178 28 C -0.071 4.071 29 C 0.022 3.978 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.253 0.747 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.247 0.753 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.046 0.954 47 H 0.002 0.998 48 H 0.053 0.947 49 H 0.075 0.925 50 H 0.038 0.962 51 H 0.092 0.908 52 H 0.108 0.892 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.849 -33.434 -9.508 35.868 hybrid contribution 1.013 0.989 0.878 1.666 sum 9.862 -32.445 -8.631 34.992 Atomic orbital electron populations 1.21805 0.95762 1.02227 1.01592 1.21805 0.96012 0.93657 1.04573 1.21109 0.95322 0.94038 0.86116 0.91598 1.22143 0.94692 1.01602 1.03381 1.45914 1.69252 1.05646 1.14784 1.20595 0.76312 0.83417 0.89332 1.90698 1.51760 1.64979 1.37442 1.20701 1.02647 0.80042 0.93207 0.87079 1.22111 0.97630 1.03988 0.97329 1.44939 1.49212 1.06807 1.37538 1.15787 0.79601 0.81218 0.82136 1.90860 1.54278 1.72861 1.32501 1.47378 1.44364 1.06569 1.38035 1.21826 0.95263 0.93314 0.89484 1.22566 0.93081 0.94327 0.99177 1.61797 1.31275 1.03939 1.29276 1.19948 0.93866 0.87576 0.94119 1.21246 0.93962 0.97792 1.42423 0.94031 1.25831 1.01920 0.96632 0.94558 1.70046 1.34493 1.08150 1.46032 0.85721 0.80012 0.78676 0.78530 1.18784 1.20973 1.17770 1.22262 0.98136 0.94782 0.91964 1.21496 0.90872 0.89490 0.95947 0.92860 0.93794 0.91484 0.89239 0.89495 0.94318 0.90950 0.90444 0.74667 0.87986 0.91868 0.92350 0.75261 0.89887 0.87986 0.88356 0.95379 0.99777 0.94661 0.92463 0.96242 0.90811 0.89203 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.80 71.99 0.71 -0.39 16 2 C -0.12 -0.59 5.47 30.60 0.17 -0.42 16 3 C 0.14 1.36 2.57 44.99 0.12 1.47 16 4 H 0.07 1.00 7.58 -2.39 -0.02 0.98 16 5 C -0.16 -1.47 9.48 71.98 0.68 -0.79 16 6 N -0.70 -7.06 4.42 -442.54 -1.96 -9.02 16 7 C 0.52 8.92 7.19 87.66 0.63 9.55 16 8 O -0.57 -14.04 15.50 -3.03 -0.05 -14.08 16 9 C 0.14 2.57 2.95 44.24 0.13 2.70 16 10 H 0.11 2.07 7.65 -2.39 -0.02 2.05 16 11 C -0.15 -2.14 9.38 71.98 0.68 -1.46 16 12 N -0.73 -16.91 4.86 -461.42 -2.24 -19.15 16 13 C 0.71 21.28 8.27 179.06 1.48 22.76 16 14 O -0.62 -22.15 15.47 -3.97 -0.06 -22.21 16 15 N -0.63 -18.88 3.01 -835.94 -2.52 -21.39 16 16 C 0.12 3.20 6.54 86.35 0.56 3.77 16 17 C 0.04 1.15 5.62 86.38 0.49 1.64 16 18 N -0.54 -21.79 4.62 -899.82 -4.16 -25.95 16 19 C 0.17 8.12 3.79 85.56 0.32 8.45 16 20 C -0.52 -29.56 8.96 25.60 0.23 -29.33 16 21 H 0.04 2.65 7.37 -2.91 -0.02 2.63 16 22 C 0.01 0.46 5.47 84.65 0.46 0.93 16 23 N -0.95 -59.05 13.96 21.45 0.30 -58.76 16 24 Si 0.95 43.85 27.47 68.60 1.88 45.74 16 25 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 27 H -0.25 -11.05 6.54 99.48 0.65 -10.39 16 28 C 0.06 2.27 5.46 86.39 0.47 2.74 16 29 C 0.15 4.89 6.61 86.35 0.57 5.46 16 30 H 0.05 0.41 7.75 -2.39 -0.02 0.39 16 31 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.42 1.81 8.02 -92.71 -0.74 1.07 16 39 H 0.10 0.71 7.56 -2.39 -0.02 0.69 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.41 8.98 5.33 -92.71 -0.49 8.49 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.10 2.06 5.74 -2.39 -0.01 2.04 16 45 H 0.10 2.73 7.99 -2.39 -0.02 2.71 16 46 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 47 H -0.02 -0.74 7.18 -2.39 -0.02 -0.76 16 48 H 0.04 1.61 7.40 -2.39 -0.02 1.59 16 49 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 50 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.07 3.30 6.67 -2.39 -0.02 3.29 16 52 H 0.09 3.05 7.04 -2.39 -0.02 3.03 16 53 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -76.08 415.02 -1.49 -77.58 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -0.39 Total: 20.17 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 7.70 Total: 27.07 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -10.57 Total: -134.26 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.11 Total: -36.30 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Total: -76.08 -1.49 -77.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601564967.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.019 kcal (2) G-P(sol) polarization free energy of solvation -76.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds