Wall clock time and date at job start Sat Apr 11 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 120.00109 * 2 1 4 4 C 1.53005 * 109.46752 * 269.99758 * 3 2 1 5 5 C 1.53001 * 109.47059 * 299.99758 * 4 3 2 6 6 C 1.52994 * 109.47341 * 59.99931 * 4 3 2 7 7 C 1.53001 * 109.46829 * 180.02562 * 4 3 2 8 8 N 1.46901 * 109.46982 * 179.97438 * 7 4 3 9 9 C 1.34775 * 119.99875 * 179.97438 * 2 1 3 10 10 O 1.21350 * 119.99989 * 185.28907 * 9 2 1 11 11 C 1.49454 * 120.00042 * 5.01703 * 9 2 1 12 12 O 1.21347 * 119.99835 * 84.60422 * 11 9 2 13 13 N 1.34772 * 119.99916 * 264.60890 * 11 9 2 14 14 C 1.47079 * 120.88461 * 4.81126 * 13 11 9 15 15 C 1.53687 * 108.28027 * 128.75487 * 14 13 11 16 16 N 1.46896 * 109.25685 * 54.08545 * 15 14 13 17 17 C 1.46907 * 111.00216 * 172.61021 * 16 15 14 18 18 C 1.50701 * 109.46695 * 294.30018 * 17 16 15 19 19 H 1.08001 * 119.99929 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99802 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99793 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47461 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47295 * 119.99708 * 22 20 18 25 25 H 1.48502 * 109.47332 * 239.99571 * 22 20 18 26 26 C 1.46899 * 111.26635 * 296.75217 * 16 15 14 27 27 C 1.47086 * 120.88202 * 185.08842 * 13 11 9 28 28 H 1.08994 * 109.47479 * 264.71765 * 1 2 3 29 29 H 1.09000 * 109.46851 * 24.71662 * 1 2 3 30 30 H 1.09003 * 109.47108 * 144.71103 * 1 2 3 31 31 H 1.08998 * 109.47425 * 29.99062 * 3 2 1 32 32 H 1.08992 * 109.47397 * 149.99730 * 3 2 1 33 33 H 1.09000 * 109.47084 * 59.99576 * 5 4 3 34 34 H 1.08995 * 109.47259 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47100 * 300.00530 * 5 4 3 36 36 H 1.08998 * 109.47374 * 60.00367 * 6 4 3 37 37 H 1.09005 * 109.47115 * 180.02562 * 6 4 3 38 38 H 1.08998 * 109.47225 * 299.99964 * 6 4 3 39 39 H 1.08998 * 109.47144 * 299.99179 * 7 4 3 40 40 H 1.08992 * 109.47600 * 59.99800 * 7 4 3 41 41 H 1.00897 * 111.00049 * 179.97438 * 8 7 4 42 42 H 1.00900 * 110.99923 * 303.95732 * 8 7 4 43 43 H 1.09007 * 109.62303 * 248.52590 * 14 13 11 44 44 H 1.09006 * 109.62808 * 9.10089 * 14 13 11 45 45 H 1.09002 * 109.64817 * 294.07605 * 15 14 13 46 46 H 1.08998 * 109.42257 * 173.95000 * 15 14 13 47 47 H 1.09001 * 109.47126 * 54.29327 * 17 16 15 48 48 H 1.08994 * 109.47369 * 174.29924 * 17 16 15 49 49 H 0.97002 * 119.99981 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.50048 * 303.14755 * 26 16 15 51 51 H 1.09004 * 109.49491 * 183.06594 * 26 16 15 52 52 H 1.09002 * 109.62456 * 350.89215 * 27 13 11 53 53 H 1.08997 * 109.63178 * 111.47586 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2795 0.6439 -2.1637 6 6 1.1158 1.8932 -2.1639 7 6 3.2182 3.0350 -1.4426 8 7 3.4636 3.4586 -2.8276 9 6 2.1389 -1.1672 0.0005 10 8 3.3485 -1.1694 0.0974 11 6 1.3959 -2.4591 -0.1121 12 8 1.0881 -2.8887 -1.2044 13 7 1.0677 -3.1468 0.9995 14 6 1.3372 -2.5947 2.3359 15 6 0.0409 -2.6682 3.1582 16 7 -0.4625 -4.0482 3.1469 17 6 -1.6013 -4.2008 4.0623 18 6 -1.1369 -3.9924 5.4807 19 1 -0.0995 -3.7694 5.6820 20 6 -2.0361 -4.0875 6.5215 21 7 -3.2992 -4.3597 6.2764 22 14 -1.4604 -3.8299 8.2798 23 1 -0.0044 -3.5380 8.2862 24 1 -2.1962 -2.6878 8.8793 25 1 -1.7230 -5.0584 9.0717 26 6 -0.8195 -4.4740 1.7870 27 6 0.4360 -4.4719 0.9085 28 1 -0.3634 -0.0946 1.0232 29 1 -0.3633 0.9335 -0.4297 30 1 -0.3633 -0.8389 -0.5937 31 1 1.6085 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 2.7346 -0.3001 -2.1636 34 1 3.4616 0.9586 -3.1912 35 1 4.2319 0.5136 -1.6498 36 1 0.5267 2.6529 -1.6502 37 1 1.2976 2.2073 -3.1917 38 1 0.5708 0.9492 -2.1638 39 1 2.6295 3.7949 -0.9288 40 1 4.1705 2.9043 -0.9289 41 1 3.9679 4.3321 -2.8546 42 1 3.9523 2.7424 -3.3436 43 1 2.1172 -3.1798 2.8232 44 1 1.6567 -1.5565 2.2456 45 1 -0.7069 -2.0047 2.7238 46 1 0.2451 -2.3640 4.1847 47 1 -2.3653 -3.4628 3.8180 48 1 -2.0180 -5.2028 3.9599 49 1 -3.9318 -4.4270 7.0087 50 1 -1.5553 -3.7854 1.3716 51 1 -1.2393 -5.4794 1.8191 52 1 0.1594 -4.6753 -0.1260 53 1 1.1310 -5.2339 1.2613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601582038.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:44 Heat of formation + Delta-G solvation = -75.749658 kcal Electronic energy + Delta-G solvation = -31783.424585 eV Core-core repulsion = 27689.470326 eV Total energy + Delta-G solvation = -4093.954259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.25654 -40.53851 -39.12657 -38.56283 -36.35654 -36.11868 -34.42925 -32.91610 -32.28296 -30.21021 -29.10192 -28.60205 -27.82264 -27.00259 -26.04955 -24.83331 -24.39453 -23.25642 -21.60516 -20.10978 -19.66375 -18.90412 -18.48786 -18.16598 -17.81488 -17.36861 -16.70881 -16.30250 -16.27142 -16.05521 -15.92893 -15.68394 -15.39011 -15.36611 -15.23361 -14.60338 -14.50309 -14.32358 -14.26504 -14.06557 -13.98404 -13.58594 -13.58014 -13.21882 -13.08871 -12.88043 -12.68578 -12.65133 -12.62190 -12.49638 -12.43139 -12.33308 -12.13380 -12.09200 -11.79684 -11.71508 -11.60860 -11.26887 -10.72375 -10.60810 -10.02529 -9.88100 -9.54360 -9.06916 -8.18872 -6.28287 0.90349 0.95303 1.38677 1.43340 1.45514 1.57549 2.14939 2.42033 2.97488 3.12921 3.19686 3.61287 3.76149 3.81177 3.84709 3.93658 4.01717 4.10250 4.11198 4.17840 4.33636 4.35974 4.41065 4.42553 4.48584 4.64069 4.68464 4.72386 4.73026 4.77190 4.80218 4.84928 4.90921 4.96607 5.00618 5.06023 5.10968 5.13780 5.20688 5.27790 5.30896 5.36530 5.49241 5.65537 5.90650 5.94462 6.04729 6.24729 6.27015 6.55446 6.57217 6.60252 6.63304 6.87701 7.41678 8.92272 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.002595 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.579862 B =10786.367575 C =11546.717138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.584 5.584 3 C 0.117 3.883 4 C -0.075 4.075 5 C -0.132 4.132 6 C -0.129 4.129 7 C 0.079 3.921 8 N -0.853 5.853 9 C 0.521 3.479 10 O -0.536 6.536 11 C 0.514 3.486 12 O -0.550 6.550 13 N -0.589 5.589 14 C 0.121 3.879 15 C 0.058 3.942 16 N -0.542 5.542 17 C 0.210 3.790 18 C -0.519 4.519 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.283 1.283 26 C 0.046 3.954 27 C 0.123 3.877 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.029 0.971 41 H 0.350 0.650 42 H 0.341 0.659 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.029 0.971 46 H 0.088 0.912 47 H -0.034 1.034 48 H 0.007 0.993 49 H 0.263 0.737 50 H 0.026 0.974 51 H 0.088 0.912 52 H 0.098 0.902 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.810 15.632 -14.714 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.316 5.316 3 C -0.005 4.005 4 C -0.076 4.076 5 C -0.190 4.190 6 C -0.187 4.187 7 C -0.052 4.052 8 N -0.385 5.385 9 C 0.303 3.697 10 O -0.413 6.413 11 C 0.297 3.703 12 O -0.428 6.428 13 N -0.322 5.322 14 C -0.001 4.001 15 C -0.071 4.071 16 N -0.267 5.267 17 C 0.084 3.916 18 C -0.557 4.557 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.209 1.209 26 C -0.083 4.083 27 C 0.001 3.999 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.047 0.953 46 H 0.107 0.893 47 H -0.017 1.017 48 H 0.025 0.975 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.106 0.894 52 H 0.117 0.883 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.697 15.116 -15.045 23.859 hybrid contribution 0.109 -0.076 0.853 0.863 sum 10.805 15.040 -14.192 23.332 Atomic orbital electron populations 1.22226 0.77367 1.05031 1.03153 1.47803 1.08193 1.05108 1.70520 1.21857 0.98209 0.83591 0.96828 1.20957 0.96880 0.95058 0.94755 1.21790 0.99209 0.97578 1.00417 1.21788 0.95021 1.00742 1.01103 1.21653 0.98142 0.95201 0.90201 1.58721 1.57433 1.08877 1.13468 1.20003 0.87621 0.85027 0.77001 1.90778 1.13806 1.86802 1.49871 1.20496 0.78986 0.86173 0.84631 1.90759 1.54442 1.70404 1.27185 1.48339 1.58110 1.19609 1.06135 1.22080 0.97913 0.99513 0.80620 1.22361 0.94755 0.89316 1.00694 1.61979 1.35489 1.22390 1.06827 1.19366 0.86729 0.94357 0.91162 1.21477 0.95489 1.47344 0.91438 0.91448 1.25863 0.94859 0.95049 1.03751 1.70084 1.03716 1.50225 1.33429 0.85381 0.78863 0.77567 0.79087 1.18475 1.20606 1.20915 1.22423 0.95635 1.01380 0.88904 1.21850 0.94276 0.82834 1.00935 0.90968 0.86880 0.92415 0.86636 0.90135 0.95492 0.91805 0.93533 0.91338 0.92069 0.93978 0.89601 0.95304 0.83623 0.84568 0.89552 0.88870 0.95327 0.89337 1.01650 0.97461 0.92774 0.95602 0.89413 0.88338 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 8.96 127.77 1.15 2.24 16 2 N -0.58 -11.75 2.40 -848.34 -2.03 -13.79 16 3 C 0.12 1.81 4.59 86.38 0.40 2.20 16 4 C -0.08 -1.12 0.67 -52.18 -0.03 -1.16 16 5 C -0.13 -2.67 6.90 71.98 0.50 -2.18 16 6 C -0.13 -1.89 7.08 71.98 0.51 -1.38 16 7 C 0.08 0.91 5.75 86.30 0.50 1.40 16 8 N -0.85 -9.31 8.84 -186.72 -1.65 -10.96 16 9 C 0.52 14.29 3.75 87.27 0.33 14.62 16 10 O -0.54 -17.00 15.29 -3.25 -0.05 -17.05 16 11 C 0.51 15.72 5.77 87.27 0.50 16.22 16 12 O -0.55 -19.45 16.41 -3.24 -0.05 -19.51 16 13 N -0.59 -17.16 3.00 -818.61 -2.46 -19.62 16 14 C 0.12 3.36 6.51 86.50 0.56 3.93 16 15 C 0.06 1.94 5.47 86.54 0.47 2.41 16 16 N -0.54 -21.28 4.62 -898.89 -4.15 -25.43 16 17 C 0.21 10.41 4.72 85.56 0.40 10.81 16 18 C -0.52 -27.46 8.41 25.60 0.22 -27.24 16 19 H 0.07 3.46 7.13 -2.91 -0.02 3.44 16 20 C 0.00 0.16 5.46 84.66 0.46 0.62 16 21 N -0.93 -54.02 13.29 21.45 0.28 -53.74 16 22 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.05 1.51 5.62 86.38 0.49 1.99 16 27 C 0.12 3.54 6.61 86.35 0.57 4.11 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 1.31 6.29 -2.39 -0.02 1.30 16 30 H 0.06 1.21 6.89 -2.39 -0.02 1.19 16 31 H 0.12 1.12 8.07 -2.39 -0.02 1.10 16 32 H 0.08 1.44 7.35 -2.39 -0.02 1.42 16 33 H 0.03 0.70 6.22 -2.39 -0.01 0.68 16 34 H 0.06 1.13 6.57 -2.39 -0.02 1.11 16 35 H 0.05 1.03 7.85 -2.39 -0.02 1.02 16 36 H 0.07 0.79 8.07 -2.39 -0.02 0.77 16 37 H 0.06 1.00 7.61 -2.38 -0.02 0.98 16 38 H 0.04 0.72 6.07 -2.39 -0.01 0.70 16 39 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.35 2.65 9.08 -89.70 -0.81 1.84 16 42 H 0.34 3.82 7.03 -89.69 -0.63 3.19 16 43 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.09 2.27 6.45 -2.38 -0.02 2.25 16 45 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.09 3.20 6.67 -2.39 -0.02 3.19 16 47 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 48 H 0.01 0.39 7.97 -2.39 -0.02 0.38 16 49 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 50 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.09 2.84 7.99 -2.39 -0.02 2.83 16 52 H 0.10 2.75 7.04 -2.39 -0.02 2.74 16 53 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -67.96 404.74 -1.60 -69.56 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.53 Total: 17.67 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: 7.01 Total: 28.59 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -10.01 Total: -123.54 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.10 Total: -36.56 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -67.96 -1.60 -69.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601582038.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.194 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds