Wall clock time and date at job start Sat Apr 11 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 C 1.50696 * 109.47268 * 119.99873 * 2 1 3 5 5 O 1.21279 * 120.00227 * 240.00440 * 4 2 1 6 6 N 1.34778 * 120.00206 * 59.99739 * 4 2 1 7 7 C 1.46495 * 120.00249 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47008 * 180.02562 * 7 6 4 9 9 C 1.53006 * 109.46853 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.46669 * 179.97438 * 9 8 7 11 11 C 1.34774 * 119.99381 * 180.02562 * 10 9 8 12 12 O 1.21587 * 120.00337 * 354.91744 * 11 10 9 13 13 N 1.34781 * 119.99879 * 174.92242 * 11 10 9 14 14 C 1.47079 * 120.88468 * 184.71883 * 13 11 10 15 15 C 1.53695 * 108.28068 * 128.75186 * 14 13 11 16 16 N 1.46891 * 109.25605 * 54.07982 * 15 14 13 17 17 C 1.46906 * 110.99985 * 172.60833 * 16 15 14 18 18 C 1.50696 * 109.46885 * 294.30308 * 17 16 15 19 19 H 1.07995 * 120.00038 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99584 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99674 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00142 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46804 * 90.00013 * 22 20 18 24 24 H 1.48501 * 109.47185 * 210.00145 * 22 20 18 25 25 H 1.48507 * 109.46988 * 330.00245 * 22 20 18 26 26 C 1.46900 * 111.27399 * 296.75687 * 16 15 14 27 27 C 1.47084 * 120.88000 * 4.98860 * 13 11 10 28 28 H 1.08999 * 109.46856 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47142 * 299.99874 * 1 2 3 30 30 H 1.09001 * 109.46857 * 60.00300 * 1 2 3 31 31 H 1.08999 * 109.47142 * 240.00126 * 2 1 3 32 32 H 1.08996 * 109.47065 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47029 * 299.99595 * 3 2 1 34 34 H 1.08999 * 109.47028 * 60.00056 * 3 2 1 35 35 H 0.97000 * 119.99569 * 0.02562 * 6 4 2 36 36 H 1.08999 * 109.47410 * 60.00274 * 7 6 4 37 37 H 1.09008 * 109.46889 * 299.99930 * 7 6 4 38 38 H 1.08996 * 109.47272 * 60.00229 * 8 7 6 39 39 H 1.08996 * 109.47065 * 299.99899 * 8 7 6 40 40 H 1.08996 * 109.47419 * 299.99947 * 9 8 7 41 41 H 1.08996 * 109.46778 * 60.00191 * 9 8 7 42 42 H 0.96992 * 120.00037 * 0.02562 * 10 9 8 43 43 H 1.09003 * 109.62642 * 248.52336 * 14 13 11 44 44 H 1.09004 * 109.62767 * 9.09799 * 14 13 11 45 45 H 1.09007 * 109.64240 * 294.07590 * 15 14 13 46 46 H 1.09000 * 109.42209 * 173.94812 * 15 14 13 47 47 H 1.08997 * 109.46778 * 54.30245 * 17 16 15 48 48 H 1.09003 * 109.47035 * 174.29927 * 17 16 15 49 49 H 0.97005 * 119.99373 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.49199 * 303.15051 * 26 16 15 51 51 H 1.08996 * 109.49869 * 183.06341 * 26 16 15 52 52 H 1.08998 * 109.62655 * 350.89834 * 27 13 11 53 53 H 1.08997 * 109.62660 * 111.48210 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -0.1209 2.0288 6 7 1.7068 -2.0007 1.4438 7 6 2.1947 -2.6911 2.6402 8 6 1.6852 -4.1338 2.6399 9 6 2.1953 -4.8551 3.8892 10 7 1.7070 -6.2363 3.8891 11 6 2.0323 -7.0660 4.9002 12 8 2.8050 -6.6981 5.7639 13 7 1.5011 -8.3035 4.9538 14 6 1.7607 -9.1875 6.1003 15 6 0.4124 -9.7095 6.6216 16 7 -0.3275 -10.3300 5.5147 17 6 -1.5426 -10.9965 6.0019 18 6 -1.1598 -12.1578 6.8826 19 1 -0.1180 -12.3790 7.0620 20 6 -2.1395 -12.9381 7.4592 21 7 -1.8054 -13.9513 8.2282 22 14 -3.9414 -12.5550 7.1494 23 1 -4.4057 -13.2963 5.9493 24 1 -4.7450 -12.9679 8.3279 25 1 -4.1058 -11.0963 6.9245 26 6 -0.6486 -9.3472 4.4711 27 6 0.6513 -8.8081 3.8646 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1494 -2.4722 0.8052 36 1 1.8310 -2.1772 3.5300 37 1 3.2848 -2.6910 2.6406 38 1 2.0493 -4.6475 1.7502 39 1 0.5953 -4.1342 2.6392 40 1 3.2853 -4.8546 3.8894 41 1 1.8316 -4.3415 4.7791 42 1 1.1497 -6.5536 3.1615 43 1 2.3832 -10.0244 5.7838 44 1 2.2670 -8.6279 6.8869 45 1 -0.1684 -8.8817 7.0286 46 1 0.5876 -10.4498 7.4022 47 1 -2.1408 -10.2879 6.5747 48 1 -2.1229 -11.3595 5.1536 49 1 -2.4947 -14.5004 8.6336 50 1 -1.2147 -8.5245 4.9081 51 1 -1.2428 -9.8248 3.6921 52 1 0.4237 -7.9976 3.1723 53 1 1.1691 -9.6093 3.3373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601589228.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:47 Heat of formation + Delta-G solvation = -91.264278 kcal Electronic energy + Delta-G solvation = -29183.751437 eV Core-core repulsion = 25089.124414 eV Total energy + Delta-G solvation = -4094.627024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47133 -40.91705 -39.21504 -37.32829 -35.99842 -35.59861 -35.38547 -34.39210 -32.52406 -31.71850 -30.36901 -28.04784 -27.53567 -26.54358 -24.69446 -23.94399 -23.46083 -22.81114 -22.09892 -20.90210 -20.42343 -19.21311 -18.84430 -18.05722 -17.61175 -17.15447 -16.92211 -16.60021 -16.50775 -16.03229 -15.96453 -15.84779 -15.39714 -15.22229 -15.06022 -14.90539 -14.72969 -14.47463 -14.31825 -13.87502 -13.60844 -13.51378 -13.21181 -13.20698 -13.14335 -12.85386 -12.81166 -12.62537 -12.47590 -12.28988 -12.21664 -12.09632 -12.03665 -11.96800 -11.94145 -11.85449 -11.45510 -11.22784 -10.78911 -10.76410 -10.28281 -10.11414 -9.60120 -9.03500 -8.26661 -6.30361 1.35959 1.38087 1.47803 1.53607 1.63768 2.08607 2.21224 2.35543 2.88703 3.05862 3.16503 3.69064 3.90369 3.95016 3.96251 3.97911 4.04302 4.06563 4.08919 4.16366 4.25380 4.43017 4.49953 4.52149 4.54620 4.58869 4.71561 4.76267 4.77148 4.82847 4.86448 4.91077 4.94012 4.96441 5.01716 5.06835 5.09996 5.12285 5.13415 5.31054 5.33905 5.42573 5.43389 5.47657 5.53679 5.86438 6.02560 6.28967 6.55474 6.63593 6.76575 6.93869 7.26845 7.33318 7.50495 8.89736 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.001604 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.807706 B =17452.306094 C =18405.535005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.507 3.493 5 O -0.592 6.592 6 N -0.715 5.715 7 C 0.122 3.878 8 C -0.122 4.122 9 C 0.140 3.860 10 N -0.730 5.730 11 C 0.702 3.298 12 O -0.637 6.637 13 N -0.629 5.629 14 C 0.145 3.855 15 C 0.059 3.941 16 N -0.538 5.538 17 C 0.173 3.827 18 C -0.518 4.518 19 H 0.039 0.961 20 C 0.008 3.992 21 N -0.948 5.948 22 Si 0.948 3.052 23 H -0.261 1.261 24 H -0.286 1.286 25 H -0.252 1.252 26 C 0.034 3.966 27 C 0.123 3.877 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.418 0.582 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.412 0.588 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.019 0.981 46 H 0.069 0.931 47 H -0.016 1.016 48 H 0.038 0.962 49 H 0.266 0.734 50 H 0.028 0.972 51 H 0.101 0.899 52 H 0.117 0.883 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 26.522 -24.226 35.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.193 4.193 4 C 0.295 3.705 5 O -0.472 6.472 6 N -0.368 5.368 7 C -0.003 4.003 8 C -0.160 4.160 9 C 0.015 3.985 10 N -0.389 5.389 11 C 0.404 3.596 12 O -0.519 6.519 13 N -0.365 5.365 14 C 0.021 3.979 15 C -0.071 4.071 16 N -0.263 5.263 17 C 0.046 3.954 18 C -0.556 4.556 19 H 0.058 0.942 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.772 3.228 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.176 1.176 26 C -0.094 4.094 27 C 0.001 3.999 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.251 0.749 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.037 0.963 46 H 0.088 0.912 47 H 0.001 0.999 48 H 0.056 0.944 49 H 0.075 0.925 50 H 0.047 0.953 51 H 0.119 0.881 52 H 0.134 0.866 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.002 26.721 -23.155 35.485 hybrid contribution -1.449 -0.244 0.738 1.644 sum 1.553 26.477 -22.417 34.727 Atomic orbital electron populations 1.21811 0.91263 1.03692 1.03182 1.21365 0.98727 0.97267 0.95689 1.21637 1.00881 0.94436 1.02359 1.21408 0.79073 0.81947 0.88084 1.90704 1.40146 1.67276 1.49061 1.45870 1.53677 1.11777 1.25511 1.21107 0.99128 0.92061 0.87976 1.21795 1.03078 0.93226 0.97874 1.21048 0.99020 0.79747 0.98665 1.45017 1.56832 1.11973 1.25117 1.16010 0.80456 0.80646 0.82512 1.90881 1.41044 1.76907 1.43087 1.47414 1.52584 1.13443 1.23092 1.21522 0.95743 0.92462 0.88153 1.22320 0.94257 0.96506 0.93975 1.61790 1.23462 1.29044 1.12003 1.19938 0.88318 0.92689 0.94500 1.21279 0.93942 1.12164 1.28227 0.94231 1.25853 1.04129 0.94508 0.94486 1.70059 1.35233 1.19590 1.33991 0.85704 0.79104 0.79759 0.78258 1.18614 1.21221 1.17605 1.22622 0.97258 0.93924 0.95642 1.21922 0.89717 1.00034 0.88244 0.90393 0.93478 0.89699 0.85906 0.93503 0.89708 0.93784 0.74381 0.92573 0.92320 0.88169 0.88450 0.92419 0.92843 0.74887 0.90898 0.90003 0.96326 0.91215 0.99869 0.94399 0.92512 0.95334 0.88060 0.86557 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.52 9.09 71.98 0.65 0.13 16 2 C -0.11 -0.81 3.26 -11.54 -0.04 -0.85 16 3 C -0.14 -1.40 8.48 71.98 0.61 -0.79 16 4 C 0.51 7.36 7.15 87.66 0.63 7.98 16 5 O -0.59 -14.92 15.98 -3.03 -0.05 -14.96 16 6 N -0.72 -6.06 5.45 -463.06 -2.52 -8.58 16 7 C 0.12 1.35 5.67 86.38 0.49 1.84 16 8 C -0.12 -0.75 5.44 30.60 0.17 -0.59 16 9 C 0.14 2.10 5.68 86.38 0.49 2.59 16 10 N -0.73 -12.53 5.47 -478.52 -2.62 -15.14 16 11 C 0.70 19.54 8.31 179.05 1.49 21.03 16 12 O -0.64 -23.61 15.83 -3.99 -0.06 -23.68 16 13 N -0.63 -17.06 3.00 -835.03 -2.51 -19.57 16 14 C 0.15 4.74 6.61 86.50 0.57 5.31 16 15 C 0.06 2.23 5.47 86.54 0.47 2.71 16 16 N -0.54 -20.48 4.62 -898.89 -4.15 -24.63 16 17 C 0.17 7.81 3.79 85.55 0.32 8.13 16 18 C -0.52 -29.05 8.96 25.60 0.23 -28.82 16 19 H 0.04 2.49 7.37 -2.91 -0.02 2.47 16 20 C 0.01 0.43 5.47 84.66 0.46 0.89 16 21 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 22 Si 0.95 42.71 27.47 68.60 1.88 44.59 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 26 C 0.03 0.91 5.62 86.38 0.49 1.40 16 27 C 0.12 2.48 6.59 86.35 0.57 3.05 16 28 H 0.08 0.02 7.57 -2.39 -0.02 0.00 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.62 8.10 -2.39 -0.02 0.60 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.04 0.61 8.10 -2.39 -0.02 0.59 16 35 H 0.42 0.49 7.89 -92.71 -0.73 -0.24 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 42 H 0.41 4.10 5.97 -92.71 -0.55 3.55 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.08 2.81 7.09 -2.38 -0.02 2.79 16 45 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.07 3.08 6.67 -2.39 -0.02 3.07 16 47 H -0.02 -0.76 7.18 -2.39 -0.02 -0.77 16 48 H 0.04 1.63 7.40 -2.39 -0.02 1.61 16 49 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 50 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.10 2.33 7.99 -2.39 -0.02 2.31 16 52 H 0.12 1.25 5.63 -2.39 -0.01 1.24 16 53 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -83.57 417.39 -2.56 -86.14 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -0.44 Total: 10.01 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 7.61 Total: 24.02 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -11.50 Total: -126.12 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.11 Total: -38.64 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.59 kcal Total: -83.57 -2.56 -86.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601589228.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.126 kcal (2) G-P(sol) polarization free energy of solvation -83.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds