Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00314 * 2 1 4 4 H 1.48504 * 109.47010 * 270.00195 * 3 2 1 5 5 H 1.48495 * 109.46998 * 29.99879 * 3 2 1 6 6 H 1.48495 * 109.47314 * 150.00264 * 3 2 1 7 7 C 1.37875 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00566 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47405 * 180.02562 * 9 7 2 11 11 C 1.46894 * 110.99636 * 170.00560 * 10 9 7 12 12 C 1.53246 * 109.33586 * 187.25462 * 11 10 9 13 13 N 1.47071 * 108.52021 * 306.16439 * 12 11 10 14 14 C 1.34775 * 120.88638 * 231.18760 * 13 12 11 15 15 O 1.21585 * 120.00646 * 184.99589 * 14 13 12 16 16 N 1.34783 * 119.99658 * 4.99579 * 14 13 12 17 17 C 1.46500 * 119.99878 * 174.91361 * 16 14 13 18 18 C 1.52999 * 109.46976 * 179.97438 * 17 16 14 19 19 N 1.46902 * 109.47296 * 180.02562 * 18 17 16 20 20 C 1.44092 * 110.95838 * 304.15903 * 19 18 17 21 21 C 1.54619 * 112.40248 * 217.23485 * 20 19 18 22 22 C 1.54579 * 110.90130 * 319.60642 * 21 20 19 23 23 O 1.39904 * 113.22452 * 319.29175 * 22 21 20 24 24 C 1.44512 * 112.81097 * 94.89911 * 23 22 21 25 25 C 1.46263 * 111.30865 * 280.44018 * 24 23 22 26 26 C 1.47086 * 118.23672 * 51.45839 * 13 12 11 27 27 C 1.46901 * 110.99871 * 294.30114 * 10 9 7 28 28 H 0.97003 * 119.99605 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46865 * 60.00291 * 9 7 2 30 30 H 1.09005 * 109.46942 * 300.00813 * 9 7 2 31 31 H 1.08992 * 109.50103 * 67.29355 * 11 10 9 32 32 H 1.09009 * 109.49475 * 307.20734 * 11 10 9 33 33 H 1.09004 * 109.62631 * 186.45706 * 12 11 10 34 34 H 1.08993 * 109.63035 * 65.87989 * 12 11 10 35 35 H 0.97000 * 119.99876 * 354.91926 * 16 14 13 36 36 H 1.09004 * 109.47170 * 60.00528 * 17 16 14 37 37 H 1.08994 * 109.47800 * 300.00195 * 17 16 14 38 38 H 1.09004 * 109.46626 * 60.00334 * 18 17 16 39 39 H 1.08996 * 109.47629 * 300.00859 * 18 17 16 40 40 H 1.08997 * 108.92477 * 96.47878 * 20 19 18 41 41 H 1.09005 * 108.91247 * 337.98509 * 20 19 18 42 42 H 1.08996 * 109.19313 * 199.23738 * 21 20 19 43 43 H 1.08997 * 109.14889 * 79.94646 * 21 20 19 44 44 H 1.08999 * 108.73094 * 198.31882 * 22 21 20 45 45 H 1.09002 * 108.72916 * 80.25088 * 22 21 20 46 46 H 1.09001 * 109.11215 * 159.97112 * 24 23 22 47 47 H 1.08996 * 109.11428 * 40.91543 * 24 23 22 48 48 H 1.09003 * 108.91742 * 180.21482 * 25 24 23 49 49 H 1.08995 * 108.91797 * 298.85283 * 25 24 23 50 50 H 1.09000 * 109.62253 * 68.25425 * 26 13 12 51 51 H 1.09000 * 109.62615 * 188.83210 * 26 13 12 52 52 H 1.09000 * 109.49338 * 292.70778 * 27 10 9 53 53 H 1.09007 * 109.49142 * 52.78940 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5209 -4.8935 0.2375 12 6 2.5635 -6.0033 0.4103 13 7 3.4612 -5.9864 -0.7545 14 6 3.7116 -7.1124 -1.4514 15 8 4.5254 -7.1002 -2.3547 16 7 3.0597 -8.2522 -1.1471 17 6 3.2480 -9.4468 -1.9739 18 6 2.4014 -10.5923 -1.4153 19 7 2.5906 -11.7904 -2.2440 20 6 2.2844 -11.5156 -3.6249 21 6 1.5852 -12.7057 -4.3216 22 6 2.2172 -14.0478 -3.8871 23 8 3.6121 -13.9957 -3.7924 24 6 4.0725 -13.7194 -2.4507 25 6 3.9764 -12.2936 -2.1388 26 6 4.0835 -4.7091 -1.1350 27 6 2.9765 -3.6492 -1.2505 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5568 -0.8904 30 1 0.6245 -2.5571 0.8897 31 1 0.8793 -5.1264 -0.6123 32 1 0.9157 -4.8192 1.1411 33 1 2.0628 -6.9695 0.4727 34 1 3.1390 -5.8267 1.3189 35 1 2.4658 -8.2814 -0.3807 36 1 4.2994 -9.7340 -1.9633 37 1 2.9402 -9.2327 -2.9974 38 1 1.3498 -10.3053 -1.4256 39 1 2.7095 -10.8063 -0.3920 40 1 3.2103 -11.2913 -4.1545 41 1 1.6315 -10.6441 -3.6754 42 1 1.6830 -12.5965 -5.4016 43 1 0.5281 -12.7048 -4.0557 44 1 1.9439 -14.8144 -4.6122 45 1 1.8106 -14.3279 -2.9153 46 1 5.1115 -14.0358 -2.3577 47 1 3.4647 -14.2816 -1.7419 48 1 4.3359 -12.1291 -1.1230 49 1 4.6080 -11.7371 -2.8312 50 1 4.8024 -4.4105 -0.3720 51 1 4.5883 -4.8193 -2.0947 52 1 2.3146 -3.8993 -2.0796 53 1 3.4271 -2.6723 -1.4261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601614697.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -67.260132 kcal Electronic energy + Delta-G solvation = -30333.941001 eV Core-core repulsion = 26240.354876 eV Total energy + Delta-G solvation = -4093.586126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56665 -40.75840 -39.18774 -37.99801 -36.02379 -35.62900 -34.36351 -33.64424 -32.20225 -31.19385 -29.94456 -28.21236 -27.20749 -26.72318 -24.75162 -24.13395 -23.86307 -22.52526 -22.23360 -21.10625 -20.49854 -19.16405 -18.50182 -17.80315 -17.46071 -17.28366 -16.96084 -16.78620 -16.60144 -16.11559 -16.01499 -15.79625 -15.51909 -15.44419 -15.27624 -15.05462 -14.77104 -14.37942 -14.37247 -14.05440 -13.82515 -13.61040 -13.38892 -13.10487 -12.93658 -12.77143 -12.71537 -12.59568 -12.38817 -12.32491 -12.25111 -12.18186 -12.00571 -11.77691 -11.72323 -11.42017 -11.32712 -11.20856 -10.62518 -10.55068 -10.31617 -9.63196 -9.51071 -9.05484 -8.21294 -6.30847 1.42306 1.42627 1.52186 1.54605 2.03925 2.40199 2.67673 2.96926 2.99594 3.11175 3.22084 3.76052 3.83176 3.93305 3.99467 4.03667 4.08195 4.14011 4.19398 4.23418 4.24185 4.36643 4.41832 4.42598 4.44568 4.54797 4.61117 4.70591 4.72397 4.77553 4.83316 4.86499 4.91101 4.93258 4.97525 5.00958 5.02497 5.10357 5.16142 5.17253 5.21907 5.36518 5.41683 5.63403 5.87557 5.92587 6.00281 6.03011 6.24429 6.37714 6.57673 6.84596 6.88106 7.38897 7.45313 8.89697 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.030476 B = 0.001770 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.536817 B =15817.790775 C =16046.444425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.037 3.963 12 C 0.127 3.873 13 N -0.628 5.628 14 C 0.703 3.297 15 O -0.637 6.637 16 N -0.729 5.729 17 C 0.108 3.892 18 C 0.054 3.946 19 N -0.517 5.517 20 C 0.049 3.951 21 C -0.139 4.139 22 C 0.066 3.934 23 O -0.399 6.399 24 C 0.061 3.939 25 C 0.013 3.987 26 C 0.145 3.855 27 C 0.057 3.943 28 H 0.264 0.736 29 H -0.042 1.042 30 H 0.013 0.987 31 H 0.018 0.982 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.411 0.589 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.028 0.972 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.035 0.965 50 H 0.080 0.920 51 H 0.083 0.917 52 H 0.008 0.992 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -29.597 -0.908 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.093 4.093 12 C 0.004 3.996 13 N -0.365 5.365 14 C 0.405 3.595 15 O -0.519 6.519 16 N -0.389 5.389 17 C -0.018 4.018 18 C -0.074 4.074 19 N -0.240 5.240 20 C -0.080 4.080 21 C -0.177 4.177 22 C -0.012 4.012 23 O -0.318 6.318 24 C -0.015 4.015 25 C -0.114 4.114 26 C 0.022 3.978 27 C -0.072 4.072 28 H 0.073 0.927 29 H -0.024 1.024 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.251 0.749 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.090 0.910 48 H 0.119 0.881 49 H 0.053 0.947 50 H 0.098 0.902 51 H 0.101 0.899 52 H 0.027 0.973 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.522 -29.846 -1.153 30.209 hybrid contribution -0.460 2.031 -0.795 2.229 sum 4.062 -27.815 -1.947 28.178 Atomic orbital electron populations 1.70078 1.07679 1.27869 1.51781 1.25889 0.95727 1.03142 0.94859 0.85401 0.78670 0.78401 0.78264 1.20161 1.20815 1.18757 1.21471 0.93732 0.91000 1.49968 0.91663 1.19382 0.90016 0.88776 0.93613 1.62001 1.27067 1.03161 1.34011 1.22544 0.95798 0.89976 1.00932 1.21878 0.90842 0.98791 0.88062 1.47422 1.49726 1.07354 1.31953 1.16011 0.81019 0.81065 0.81451 1.90866 1.39772 1.85403 1.35873 1.44985 1.50024 1.09600 1.34283 1.21989 1.00735 0.84702 0.94360 1.22583 1.00571 0.85966 0.98298 1.61955 1.23847 1.29338 1.08841 1.21972 0.99509 0.98201 0.88360 1.22681 1.00407 0.94829 0.99794 1.22248 0.80988 0.96212 1.01749 1.87730 1.22196 1.91543 1.30282 1.21851 1.01550 0.94699 0.83420 1.21901 0.88861 0.97656 1.03031 1.21582 0.94263 0.80512 1.01492 1.22362 0.95415 0.99434 0.89984 0.92725 1.02442 0.96927 0.96338 0.89052 0.86981 0.89338 0.74915 0.92878 0.93605 0.88571 0.87667 0.95320 0.91466 0.91574 0.89941 0.90127 0.92163 0.87580 0.91017 0.88149 0.94713 0.90206 0.89896 0.97326 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.52 -28.96 8.41 25.60 0.22 -28.75 16 8 H 0.07 3.52 7.13 -2.91 -0.02 3.50 16 9 C 0.21 10.77 4.72 85.56 0.40 11.17 16 10 N -0.54 -22.03 4.62 -898.86 -4.15 -26.18 16 11 C 0.04 1.15 5.62 86.39 0.49 1.63 16 12 C 0.13 2.90 6.59 86.35 0.57 3.47 16 13 N -0.63 -18.00 3.00 -835.05 -2.51 -20.51 16 14 C 0.70 20.70 8.31 179.05 1.49 22.19 16 15 O -0.64 -24.22 15.83 -3.98 -0.06 -24.29 16 16 N -0.73 -14.39 5.47 -478.53 -2.62 -17.01 16 17 C 0.11 1.94 5.12 86.38 0.44 2.38 16 18 C 0.05 0.59 5.19 86.30 0.45 1.04 16 19 N -0.52 -6.53 4.48 -910.36 -4.08 -10.61 16 20 C 0.05 0.74 4.10 87.38 0.36 1.09 16 21 C -0.14 -1.80 6.52 31.68 0.21 -1.60 16 22 C 0.07 0.86 6.20 72.52 0.45 1.30 16 23 O -0.40 -6.65 10.39 -139.83 -1.45 -8.10 16 24 C 0.06 0.70 6.38 69.91 0.45 1.14 16 25 C 0.01 0.16 4.27 84.05 0.36 0.52 16 26 C 0.15 4.74 6.61 86.50 0.57 5.31 16 27 C 0.06 2.23 5.47 86.54 0.47 2.70 16 28 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 29 H -0.04 -2.41 8.13 -2.39 -0.02 -2.43 16 30 H 0.01 0.69 7.97 -2.38 -0.02 0.67 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 2.69 7.99 -2.38 -0.02 2.67 16 33 H 0.11 1.60 5.63 -2.38 -0.01 1.59 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.41 5.43 5.97 -92.71 -0.55 4.88 16 36 H 0.05 1.10 7.12 -2.38 -0.02 1.08 16 37 H 0.05 1.01 6.69 -2.39 -0.02 1.00 16 38 H 0.10 0.91 8.13 -2.38 -0.02 0.89 16 39 H 0.11 0.77 7.90 -2.39 -0.02 0.75 16 40 H 0.03 0.54 7.11 -2.39 -0.02 0.53 16 41 H 0.07 1.02 6.90 -2.38 -0.02 1.01 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.70 7.25 -2.39 -0.02 0.69 16 46 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.67 7.46 -2.39 -0.02 0.65 16 48 H 0.10 0.88 7.69 -2.39 -0.02 0.86 16 49 H 0.03 0.56 6.87 -2.39 -0.02 0.54 16 50 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.08 2.81 7.09 -2.39 -0.02 2.79 16 52 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 53 H 0.08 3.35 6.67 -2.38 -0.02 3.34 16 Total: -1.00 -73.21 400.05 -4.84 -78.05 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.34 Total: 13.79 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 7.38 Total: 24.18 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -13.07 Total: -129.41 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.52 Total: -32.39 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -73.21 -4.84 -78.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601614697.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.792 kcal (2) G-P(sol) polarization free energy of solvation -73.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds