Wall clock time and date at job start Sat Apr 11 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46912 * 2 1 4 4 C 1.53003 * 109.47295 * 240.00517 * 2 1 3 5 5 N 1.46492 * 109.47449 * 120.00231 * 2 1 3 6 6 C 1.34773 * 120.00398 * 60.00018 * 5 2 1 7 7 O 1.21285 * 119.99698 * 359.97438 * 6 5 2 8 8 C 1.50703 * 120.00558 * 180.02562 * 6 5 2 9 9 C 1.52998 * 109.47117 * 179.97438 * 8 6 5 10 10 N 1.46502 * 109.47083 * 179.97438 * 9 8 6 11 11 C 1.34779 * 120.00207 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99510 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99840 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99376 * 180.02562 * 13 11 10 15 15 C 1.53065 * 109.44591 * 84.79556 * 14 13 11 16 16 C 1.53192 * 109.29648 * 181.23295 * 15 14 13 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45272 * 204.99544 * 14 13 11 28 28 H 1.09004 * 109.46846 * 299.99989 * 1 2 3 29 29 H 1.09000 * 109.47253 * 59.99766 * 1 2 3 30 30 H 1.08996 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46797 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47264 * 299.99624 * 3 2 1 33 33 H 1.08995 * 109.47439 * 60.00558 * 3 2 1 34 34 H 1.09010 * 109.46767 * 299.99657 * 4 2 1 35 35 H 1.09000 * 109.47201 * 59.99686 * 4 2 1 36 36 H 1.09000 * 109.47315 * 180.02562 * 4 2 1 37 37 H 0.97007 * 120.00272 * 240.00091 * 5 2 1 38 38 H 1.09000 * 109.47001 * 59.99935 * 8 6 5 39 39 H 1.08999 * 109.46696 * 299.99863 * 8 6 5 40 40 H 1.09000 * 109.47157 * 60.00129 * 9 8 6 41 41 H 1.08999 * 109.47306 * 299.99588 * 9 8 6 42 42 H 0.96995 * 119.99680 * 0.02562 * 10 9 8 43 43 H 0.96995 * 120.00047 * 359.97438 * 13 11 10 44 44 H 1.08996 * 109.45813 * 324.96250 * 14 13 11 45 45 H 1.09005 * 109.39523 * 61.35360 * 15 14 13 46 46 H 1.09004 * 109.62174 * 301.25047 * 15 14 13 47 47 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 48 48 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 49 49 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 50 50 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 51 51 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 52 52 H 1.09002 * 109.49883 * 58.67895 * 27 14 13 53 53 H 1.08997 * 109.52642 * 298.59203 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 1.6929 -1.9809 1.4094 7 8 0.9952 -2.5702 0.6113 8 6 2.1948 -2.6912 2.6401 9 6 1.6844 -4.1336 2.6403 10 7 2.1729 -4.8243 3.8364 11 6 1.8466 -6.1144 4.0501 12 8 1.1472 -6.7051 3.2499 13 7 2.2955 -6.7496 5.1507 14 6 1.9412 -8.1521 5.3827 15 6 2.9230 -9.0563 4.6334 16 6 2.5311 -10.5208 4.8532 17 7 2.4495 -10.7800 6.2971 18 6 3.1501 -11.8125 6.8613 19 1 3.4662 -11.7508 7.8922 20 6 3.4538 -12.9383 6.1084 21 7 2.8068 -13.1742 4.9867 22 14 4.7810 -14.1187 6.6869 23 1 4.1725 -15.1641 7.5484 24 1 5.4220 -14.7584 5.5100 25 1 5.8038 -13.3719 7.4625 26 6 1.6016 -9.9105 7.1240 27 6 2.0057 -8.4528 6.8819 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7215 -1.2491 37 1 2.5761 -0.2192 1.8346 38 1 1.8311 -2.1774 3.5299 39 1 3.2848 -2.6911 2.6404 40 1 2.0478 -4.6477 1.7505 41 1 0.5944 -4.1333 2.6402 42 1 2.7305 -4.3529 4.4748 43 1 2.8538 -6.2784 5.7888 44 1 0.9306 -8.3363 5.0185 45 1 3.9312 -8.8886 5.0126 46 1 2.8918 -8.8272 3.5682 47 1 3.2835 -11.1713 4.4072 48 1 1.5624 -10.7129 4.3921 49 1 3.0188 -13.9611 4.4607 50 1 0.5562 -10.0505 6.8485 51 1 1.7387 -10.1600 8.1761 52 1 1.3220 -7.7924 7.4153 53 1 3.0218 -8.2924 7.2423 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:57 Heat of formation + Delta-G solvation = -86.275922 kcal Electronic energy + Delta-G solvation = -29622.266561 eV Core-core repulsion = 25527.855849 eV Total energy + Delta-G solvation = -4094.410712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.35370 -40.98274 -39.12266 -37.67711 -36.28131 -35.82984 -33.96476 -33.33100 -31.94204 -31.50434 -30.52573 -28.23354 -28.20592 -26.95548 -25.19532 -23.89293 -23.53755 -21.97755 -21.71727 -21.05770 -20.54424 -19.40056 -18.65115 -18.12972 -17.34548 -17.02053 -16.81510 -16.70715 -16.12843 -15.83391 -15.44879 -15.34272 -15.20928 -15.15669 -14.81099 -14.69800 -14.62261 -14.47067 -14.18692 -13.98478 -13.31892 -13.17011 -13.06745 -13.01730 -13.00210 -12.80964 -12.67352 -12.61358 -12.53107 -12.34450 -12.10319 -12.08254 -12.05553 -11.97290 -11.84312 -11.52335 -11.44835 -11.21192 -10.60385 -10.57256 -10.32514 -10.05342 -9.72447 -8.69902 -7.85999 -5.32658 1.48122 1.49785 1.59390 1.60361 1.68092 2.19005 2.31086 2.52897 3.27993 3.36005 3.66336 3.69631 3.83512 3.90805 3.99425 4.08027 4.10770 4.14090 4.17670 4.36997 4.49814 4.53917 4.69096 4.70713 4.71678 4.81657 4.82627 4.85488 4.86580 4.88516 4.96661 4.97423 5.00985 5.08672 5.11210 5.15700 5.23506 5.33968 5.36807 5.39200 5.44899 5.48998 5.62506 5.65574 5.66196 5.70833 6.08606 6.39811 6.65866 7.14285 7.19658 7.35021 7.65451 7.85658 8.38886 9.21203 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.001605 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.432675 B =17441.594208 C =17744.479539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 C -0.147 4.147 4 C -0.163 4.163 5 N -0.711 5.711 6 C 0.513 3.487 7 O -0.577 6.577 8 C -0.137 4.137 9 C 0.158 3.842 10 N -0.727 5.727 11 C 0.695 3.305 12 O -0.642 6.642 13 N -0.722 5.722 14 C 0.180 3.820 15 C -0.130 4.130 16 C 0.182 3.818 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.076 0.924 20 C -0.056 4.056 21 N -0.940 5.940 22 Si 0.970 3.030 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.265 1.265 26 C 0.140 3.860 27 C -0.118 4.118 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.417 0.583 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.417 0.583 43 H 0.413 0.587 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.054 0.946 48 H -0.014 1.014 49 H 0.249 0.751 50 H 0.009 0.991 51 H 0.070 0.930 52 H 0.092 0.908 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 36.197 -2.548 36.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.221 4.221 5 N -0.364 5.364 6 C 0.299 3.701 7 O -0.456 6.456 8 C -0.176 4.176 9 C 0.033 3.967 10 N -0.385 5.385 11 C 0.395 3.605 12 O -0.524 6.524 13 N -0.377 5.377 14 C 0.074 3.926 15 C -0.170 4.170 16 C 0.056 3.944 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.093 0.907 20 C -0.251 4.251 21 N -0.586 5.586 22 Si 0.798 3.202 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.190 1.190 26 C 0.014 3.986 27 C -0.158 4.158 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.255 0.745 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.250 0.750 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.004 0.996 49 H 0.058 0.942 50 H 0.027 0.973 51 H 0.088 0.912 52 H 0.111 0.889 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.976 35.162 -3.922 35.435 hybrid contribution 0.854 -0.889 0.301 1.269 sum 2.830 34.273 -3.621 34.580 Atomic orbital electron populations 1.22196 0.95177 1.02155 1.02547 1.20417 0.93797 0.93256 0.84728 1.22035 1.02213 0.92226 1.03996 1.22204 1.01176 1.01170 0.97592 1.46055 1.53593 1.11255 1.25527 1.20802 0.79522 0.82349 0.87381 1.90722 1.39370 1.67135 1.48390 1.21740 1.04892 0.93311 0.97697 1.20655 0.98333 0.91526 0.86201 1.44754 1.56918 1.09842 1.26981 1.16228 0.80108 0.82123 0.82037 1.90935 1.44969 1.67889 1.48569 1.45033 1.56006 1.12501 1.24146 1.20506 0.97144 0.78727 0.96216 1.22319 0.99520 0.96581 0.98621 1.20453 0.97127 0.92167 0.84689 1.44338 1.52173 1.33082 1.03595 1.19589 1.27283 0.94542 0.97741 0.90667 1.25904 1.01940 0.98734 0.98495 1.70221 1.42381 1.28272 1.17755 0.85237 0.79363 0.78750 0.76846 1.21072 1.22351 1.18976 1.21067 0.92341 0.89712 0.95487 1.22116 1.03224 0.97396 0.93039 0.91977 0.91004 0.93603 0.90835 0.90268 0.90735 0.93634 0.90980 0.92106 0.74514 0.84758 0.85027 0.94005 0.93606 0.74525 0.74993 0.93087 0.91817 0.94114 0.92743 0.99620 0.94239 0.97273 0.91156 0.88936 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.40 71.98 0.60 -1.63 16 2 C 0.16 1.72 1.06 3.61 0.00 1.72 16 3 C -0.15 -0.58 8.59 71.98 0.62 0.04 16 4 C -0.16 -2.31 8.40 71.98 0.60 -1.70 16 5 N -0.71 -6.24 5.10 -422.93 -2.16 -8.40 16 6 C 0.51 7.91 7.25 87.66 0.64 8.54 16 7 O -0.58 -15.14 12.19 -3.04 -0.04 -15.18 16 8 C -0.14 -1.26 5.81 29.85 0.17 -1.08 16 9 C 0.16 3.31 4.96 86.38 0.43 3.74 16 10 N -0.73 -13.97 5.56 -478.53 -2.66 -16.63 16 11 C 0.70 21.22 8.53 179.05 1.53 22.74 16 12 O -0.64 -27.75 16.01 -3.99 -0.06 -27.82 16 13 N -0.72 -19.02 5.08 -457.63 -2.33 -21.35 16 14 C 0.18 6.29 2.41 45.03 0.11 6.40 16 15 C -0.13 -5.43 5.66 30.68 0.17 -5.26 16 16 C 0.18 9.51 5.30 86.36 0.46 9.97 16 17 N -0.61 -31.09 3.00 -699.10 -2.09 -33.19 16 18 C -0.26 -14.42 9.58 84.03 0.81 -13.61 16 19 H 0.08 3.92 7.89 -2.91 -0.02 3.90 16 20 C -0.06 -3.18 4.92 84.86 0.42 -2.76 16 21 N -0.94 -57.92 11.20 21.65 0.24 -57.68 16 22 Si 0.97 45.33 29.59 68.60 2.03 47.36 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.14 5.68 6.52 86.36 0.56 6.24 16 27 C -0.12 -3.62 5.55 30.67 0.17 -3.45 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.97 6.17 -2.39 -0.01 0.96 16 31 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.04 0.99 6.17 -2.38 -0.01 0.97 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.42 0.57 8.47 -92.70 -0.79 -0.22 16 38 H 0.13 0.37 8.14 -2.39 -0.02 0.36 16 39 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 41 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 42 H 0.42 3.90 8.49 -92.71 -0.79 3.11 16 43 H 0.41 7.15 8.62 -92.71 -0.80 6.35 16 44 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 45 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 46 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.05 3.19 6.06 -2.39 -0.01 3.17 16 48 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 51 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 52 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -86.34 415.99 -1.23 -87.57 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -1.46 Total: 15.42 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: 7.29 Total: 29.90 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -9.00 Total: -137.25 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.10 Total: -42.99 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -86.34 -1.23 -87.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.294 kcal (2) G-P(sol) polarization free energy of solvation -86.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds