Wall clock time and date at job start Sat Apr 11 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47052 * 2 1 4 4 C 1.52994 * 109.47220 * 240.00040 * 2 1 3 5 5 C 1.50703 * 109.47250 * 119.99693 * 2 1 3 6 6 O 1.21284 * 120.00042 * 0.02562 * 5 2 1 7 7 N 1.34775 * 119.99818 * 179.97438 * 5 2 1 8 8 C 1.46501 * 119.99642 * 180.02562 * 7 5 2 9 9 C 1.52999 * 109.47074 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47074 * 180.02562 * 9 8 7 11 11 C 1.34783 * 119.99874 * 180.02562 * 10 9 8 12 12 O 1.21585 * 119.99991 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99707 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99730 * 179.97438 * 13 11 10 15 15 C 1.53081 * 109.43848 * 84.79387 * 14 13 11 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 13 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 204.99782 * 14 13 11 28 28 H 1.09003 * 109.47189 * 300.00073 * 1 2 3 29 29 H 1.08995 * 109.47016 * 59.99799 * 1 2 3 30 30 H 1.08995 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47583 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47278 * 300.00103 * 3 2 1 33 33 H 1.09003 * 109.47183 * 59.99924 * 3 2 1 34 34 H 1.09004 * 109.47195 * 299.99972 * 4 2 1 35 35 H 1.08995 * 109.46995 * 60.00148 * 4 2 1 36 36 H 1.09004 * 109.47184 * 180.02562 * 4 2 1 37 37 H 0.96998 * 120.00462 * 0.02562 * 7 5 2 38 38 H 1.08996 * 109.47614 * 60.00197 * 8 7 5 39 39 H 1.09003 * 109.47163 * 300.00121 * 8 7 5 40 40 H 1.09004 * 109.47014 * 60.00257 * 9 8 7 41 41 H 1.08996 * 109.47375 * 300.00399 * 9 8 7 42 42 H 0.97001 * 120.00469 * 0.02562 * 10 9 8 43 43 H 0.96998 * 120.00063 * 359.97438 * 13 11 10 44 44 H 1.08998 * 109.46073 * 324.97324 * 14 13 11 45 45 H 1.08992 * 109.38800 * 61.36034 * 15 14 13 46 46 H 1.09002 * 109.61927 * 301.25313 * 15 14 13 47 47 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 48 48 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 49 49 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 51 51 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 52 52 H 1.09002 * 109.49848 * 58.67960 * 27 14 13 53 53 H 1.09002 * 109.52425 * 298.59433 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 8 1.2443 -1.1717 2.0287 7 7 3.3574 -0.8339 1.4435 8 6 3.8458 -1.5249 2.6394 9 6 5.3758 -1.5248 2.6395 10 7 5.8641 -2.2164 3.8351 11 6 7.1892 -2.3392 4.0486 12 8 7.9793 -1.8764 3.2487 13 7 7.6384 -2.9759 5.1483 14 6 9.0788 -3.1098 5.3801 15 6 9.6034 -1.8478 6.0696 16 6 11.1148 -1.9784 6.2824 17 7 11.3866 -3.2248 7.0112 18 6 12.1263 -3.2122 8.1636 19 1 11.9718 -3.9744 8.9129 20 6 13.0747 -2.2195 8.3687 21 7 13.4902 -1.9480 9.5878 22 14 13.7612 -1.2688 6.9146 23 1 12.9635 -0.0331 6.7099 24 1 15.1758 -0.9060 7.1838 25 1 13.6901 -2.1118 5.6940 26 6 10.8503 -4.4852 6.4798 27 6 9.3412 -4.3284 6.2678 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1391 36 1 3.1300 -0.7216 -1.2490 37 1 3.9878 -0.4653 0.8050 38 1 3.4822 -2.5525 2.6393 39 1 3.4827 -1.0112 3.5296 40 1 5.7390 -0.4971 2.6399 41 1 5.7392 -2.0382 1.7493 42 1 5.2338 -2.5860 4.4731 43 1 7.0081 -3.3454 5.7862 44 1 9.5897 -3.2388 4.4259 45 1 9.1090 -1.7302 7.0338 46 1 9.3976 -0.9776 5.4461 47 1 11.4768 -1.1295 6.8625 48 1 11.6192 -2.0025 5.3164 49 1 14.1527 -1.2541 9.7311 50 1 11.3310 -4.7148 5.5288 51 1 11.0399 -5.2909 7.1891 52 1 8.9469 -5.2223 5.7845 53 1 8.8510 -4.1895 7.2314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338028.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:00 Heat of formation + Delta-G solvation = -86.150100 kcal Electronic energy + Delta-G solvation = -29579.019198 eV Core-core repulsion = 25484.613942 eV Total energy + Delta-G solvation = -4094.405256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36828 -41.09406 -39.35475 -37.20949 -36.58070 -35.99774 -35.01438 -33.99410 -31.96152 -31.85945 -29.83696 -28.22058 -28.00242 -26.76316 -24.81335 -24.40995 -23.55317 -23.09534 -21.85820 -21.25491 -20.44881 -19.40858 -18.75693 -17.89219 -17.56271 -17.19460 -17.04975 -16.77894 -16.27107 -15.94922 -15.60564 -15.46634 -15.40679 -15.27356 -15.09323 -14.83381 -14.68249 -14.52364 -14.31946 -14.05027 -13.83984 -13.41680 -13.32022 -13.11172 -12.97987 -12.93497 -12.80366 -12.66681 -12.62546 -12.55046 -12.21103 -12.04126 -11.90986 -11.85582 -11.74654 -11.49347 -11.47547 -11.30613 -10.78730 -10.74374 -10.37329 -10.19546 -9.78116 -8.95970 -8.16956 -5.47959 1.29422 1.40034 1.47516 1.49189 1.57889 2.14960 2.27509 2.40935 3.04819 3.27729 3.39339 3.58100 3.65572 3.83058 3.84409 3.91299 3.96894 4.02535 4.25978 4.26406 4.32753 4.37730 4.48126 4.69380 4.70142 4.71003 4.72010 4.80250 4.81690 4.82631 4.88838 4.94981 4.95124 4.97192 5.00962 5.03664 5.10149 5.17825 5.21028 5.28759 5.33451 5.34699 5.43055 5.45720 5.57014 5.87238 5.99613 6.13407 6.44305 6.91191 7.09220 7.16721 7.58354 7.62049 8.03293 9.02611 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026819 B = 0.001671 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.772977 B =16753.922129 C =17190.483459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.520 3.480 6 O -0.583 6.583 7 N -0.716 5.716 8 C 0.118 3.882 9 C 0.136 3.864 10 N -0.732 5.732 11 C 0.702 3.298 12 O -0.633 6.633 13 N -0.725 5.725 14 C 0.179 3.821 15 C -0.130 4.130 16 C 0.125 3.875 17 N -0.619 5.619 18 C -0.245 4.245 19 H 0.061 0.939 20 C -0.032 4.032 21 N -0.954 5.954 22 Si 0.938 3.062 23 H -0.281 1.281 24 H -0.309 1.309 25 H -0.264 1.264 26 C 0.143 3.857 27 C -0.124 4.124 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.415 0.585 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.413 0.587 43 H 0.411 0.589 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.026 0.974 49 H 0.261 0.739 50 H 0.034 0.966 51 H 0.069 0.931 52 H 0.097 0.903 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.256 2.039 -22.772 35.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 C -0.198 4.198 4 C -0.197 4.197 5 C 0.307 3.693 6 O -0.462 6.462 7 N -0.369 5.369 8 C -0.007 4.007 9 C 0.011 3.989 10 N -0.390 5.390 11 C 0.402 3.598 12 O -0.514 6.514 13 N -0.380 5.380 14 C 0.074 3.926 15 C -0.170 4.170 16 C 0.000 4.000 17 N -0.343 5.343 18 C -0.374 4.374 19 H 0.078 0.922 20 C -0.227 4.227 21 N -0.601 5.601 22 Si 0.768 3.232 23 H -0.208 1.208 24 H -0.238 1.238 25 H -0.189 1.189 26 C 0.018 3.982 27 C -0.164 4.164 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.253 0.747 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.250 0.750 43 H 0.248 0.752 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.052 0.948 51 H 0.087 0.913 52 H 0.115 0.885 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.999 2.178 -22.842 35.432 hybrid contribution 0.602 0.508 0.370 0.870 sum -26.397 2.686 -22.472 34.771 Atomic orbital electron populations 1.21678 0.92358 1.02090 1.02468 1.20869 0.97786 0.97281 0.92752 1.21904 1.02036 0.92407 1.03430 1.21898 1.02044 1.00097 0.95666 1.21173 0.81784 0.78651 0.87646 1.90692 1.56432 1.50379 1.48714 1.45734 1.07283 1.58532 1.25355 1.21286 0.92158 0.98415 0.88835 1.21156 0.92171 0.97798 0.87749 1.44686 1.04714 1.62431 1.27133 1.16061 0.82775 0.79027 0.81970 1.90913 1.56151 1.55687 1.48657 1.45080 1.07998 1.60737 1.24193 1.20537 0.79305 0.94592 0.98205 1.22247 0.96049 0.98408 1.00342 1.21272 0.94986 0.89103 0.94680 1.44524 1.60551 1.02531 1.26731 1.18916 1.12576 1.12208 0.93725 0.92150 1.25829 0.98627 1.00235 0.97972 1.69950 1.34676 1.34286 1.21144 0.86043 0.76451 0.79002 0.81702 1.20810 1.23806 1.18880 1.21113 0.92194 0.87485 0.97433 1.22148 0.97426 0.97080 0.99704 0.93428 0.89735 0.93312 0.90848 0.89502 0.93021 0.92886 0.89520 0.90818 0.74726 0.90712 0.91047 0.91399 0.90975 0.75023 0.75207 0.91390 0.91878 0.92498 0.93338 0.95600 0.93015 0.94788 0.91266 0.88490 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 7.76 71.98 0.56 -0.88 16 2 C -0.08 -0.80 0.87 -52.93 -0.05 -0.84 16 3 C -0.14 -0.86 8.37 71.98 0.60 -0.25 16 4 C -0.14 -0.79 8.37 71.98 0.60 -0.19 16 5 C 0.52 8.04 6.48 87.66 0.57 8.60 16 6 O -0.58 -14.21 15.98 -3.04 -0.05 -14.26 16 7 N -0.72 -7.72 5.34 -463.06 -2.47 -10.19 16 8 C 0.12 1.37 5.79 86.38 0.50 1.87 16 9 C 0.14 1.85 5.79 86.38 0.50 2.35 16 10 N -0.73 -11.52 5.56 -478.52 -2.66 -14.18 16 11 C 0.70 17.39 8.53 179.05 1.53 18.91 16 12 O -0.63 -21.68 16.01 -3.98 -0.06 -21.74 16 13 N -0.73 -16.18 5.08 -457.61 -2.33 -18.50 16 14 C 0.18 5.26 2.41 45.03 0.11 5.37 16 15 C -0.13 -4.64 5.66 30.68 0.17 -4.46 16 16 C 0.13 5.50 4.20 86.36 0.36 5.87 16 17 N -0.62 -28.65 2.77 -699.09 -1.94 -30.59 16 18 C -0.24 -13.71 10.03 84.03 0.84 -12.86 16 19 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 20 C -0.03 -1.86 5.23 84.86 0.44 -1.42 16 21 N -0.95 -60.03 13.97 21.65 0.30 -59.72 16 22 Si 0.94 47.68 24.34 68.60 1.67 49.35 16 23 H -0.28 -13.77 6.62 99.48 0.66 -13.12 16 24 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 25 H -0.26 -13.00 6.64 99.48 0.66 -12.34 16 26 C 0.14 5.14 6.52 86.37 0.56 5.70 16 27 C -0.12 -3.36 5.55 30.67 0.17 -3.19 16 28 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.07 0.28 7.57 -2.39 -0.02 0.26 16 32 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.07 0.24 7.56 -2.38 -0.02 0.23 16 37 H 0.42 2.45 7.31 -92.71 -0.68 1.77 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.41 4.05 8.49 -92.71 -0.79 3.26 16 43 H 0.41 6.34 8.62 -92.71 -0.80 5.55 16 44 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 2.37 4.50 -2.39 -0.01 2.36 16 48 H 0.03 1.15 7.07 -2.38 -0.02 1.13 16 49 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 50 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.07 2.46 7.93 -2.39 -0.02 2.44 16 52 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 53 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -80.33 414.14 -1.50 -81.83 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -1.44 Total: 13.45 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 7.48 Total: 24.57 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -9.09 Total: -133.20 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.11 Total: -36.00 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.67 Total: 49.35 kcal Total: -80.33 -1.50 -81.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338028.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.322 kcal (2) G-P(sol) polarization free energy of solvation -80.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds