Wall clock time and date at job start Sat Apr 11 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47306 * 2 1 4 4 H 1.09000 * 109.46543 * 55.00026 * 3 2 1 5 5 C 1.52993 * 109.47017 * 174.99821 * 3 2 1 6 6 N 1.46492 * 109.47052 * 295.00122 * 3 2 1 7 7 C 1.34778 * 120.00107 * 154.99700 * 6 3 2 8 8 O 1.21282 * 119.99827 * 0.02562 * 7 6 3 9 9 C 1.50696 * 119.99940 * 180.27303 * 7 6 3 10 10 C 1.53003 * 109.47128 * 179.72706 * 9 7 6 11 11 N 1.46502 * 109.47480 * 180.02562 * 10 9 7 12 12 C 1.34768 * 120.00057 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00419 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99827 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99958 * 179.97438 * 14 12 11 16 16 C 1.53044 * 109.46104 * 275.03288 * 15 14 12 17 17 C 1.53191 * 109.31502 * 178.60101 * 16 15 14 18 18 N 1.46930 * 108.76437 * 54.65225 * 17 16 15 19 19 C 1.36937 * 120.63187 * 126.40708 * 18 17 16 20 20 H 1.08000 * 119.99688 * 332.60664 * 19 18 17 21 21 C 1.38809 * 120.00081 * 152.60770 * 19 18 17 22 22 N 1.31630 * 119.99760 * 159.34511 * 21 19 18 23 23 Si 1.86799 * 120.00296 * 339.34374 * 21 19 18 24 24 H 1.48500 * 109.46900 * 92.94071 * 23 21 19 25 25 H 1.48490 * 109.47314 * 212.94409 * 23 21 19 26 26 H 1.48499 * 109.46766 * 332.94781 * 23 21 19 27 27 C 1.46930 * 118.74191 * 306.38630 * 18 17 16 28 28 C 1.53037 * 109.45981 * 154.97671 * 15 14 12 29 29 H 1.09007 * 109.46873 * 60.00025 * 1 2 3 30 30 H 1.09001 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47424 * 300.00190 * 1 2 3 32 32 H 1.09002 * 109.47248 * 240.00311 * 2 1 3 33 33 H 1.08999 * 109.47444 * 119.99805 * 2 1 3 34 34 H 1.08999 * 109.47384 * 300.00020 * 5 3 2 35 35 H 1.08998 * 109.47496 * 60.00165 * 5 3 2 36 36 H 1.09001 * 109.46940 * 180.02562 * 5 3 2 37 37 H 0.97002 * 120.00179 * 334.99525 * 6 3 2 38 38 H 1.09001 * 109.47519 * 299.72209 * 9 7 6 39 39 H 1.08997 * 109.47526 * 59.72563 * 9 7 6 40 40 H 1.08992 * 109.47067 * 300.00048 * 10 9 7 41 41 H 1.09006 * 109.46968 * 59.99756 * 10 9 7 42 42 H 0.96999 * 119.99383 * 359.97438 * 11 10 9 43 43 H 0.96996 * 120.00342 * 0.02562 * 14 12 11 44 44 H 1.08998 * 109.46283 * 35.00454 * 15 14 12 45 45 H 1.09006 * 109.49326 * 298.56424 * 16 15 14 46 46 H 1.08997 * 109.50197 * 58.65989 * 16 15 14 47 47 H 1.08992 * 109.59932 * 294.86982 * 17 16 15 48 48 H 1.08997 * 109.70456 * 174.50037 * 17 16 15 49 49 H 0.97001 * 119.99493 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.58079 * 293.82169 * 27 18 17 51 51 H 1.08995 * 109.70444 * 173.46169 * 27 18 17 52 52 H 1.08994 * 109.49708 * 301.33519 * 28 15 14 53 53 H 1.09003 * 109.50327 * 61.40260 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 1.6525 2.0975 -1.2517 7 6 1.5256 3.4385 -1.2995 8 8 1.7328 4.1029 -0.3063 9 6 1.1210 4.1116 -2.5856 10 6 1.0442 5.6241 -2.3674 11 7 0.6503 6.2786 -3.6174 12 6 0.5185 7.6190 -3.6638 13 8 0.7261 8.2852 -2.6681 14 7 0.1565 8.2211 -4.8140 15 6 0.0127 9.6782 -4.8643 16 6 -1.3886 10.0689 -4.3891 17 6 -1.5235 11.5948 -4.4098 18 7 -1.1852 12.0809 -5.7544 19 6 -2.0527 12.8850 -6.4444 20 1 -3.1139 12.8234 -6.2535 21 6 -1.5682 13.7791 -7.3892 22 7 -2.3686 14.2476 -8.3232 23 14 0.2198 14.3174 -7.3351 24 1 1.0295 13.4334 -8.2114 25 1 0.3290 15.7200 -7.8102 26 1 0.7220 14.2265 -5.9406 27 6 0.1019 11.6884 -6.3445 28 6 0.2186 10.1615 -6.3017 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8531 0.9570 1.0571 35 1 3.9995 0.9053 -0.7160 36 1 3.9281 2.4720 0.1262 37 1 1.4872 1.5661 -2.0462 38 1 1.8584 3.8930 -3.3579 39 1 0.1455 3.7399 -2.8991 40 1 0.3068 5.8428 -1.5951 41 1 2.0198 5.9959 -2.0539 42 1 0.4850 5.7471 -4.4119 43 1 -0.0095 7.6897 -5.6083 44 1 0.7577 10.1393 -4.2160 45 1 -2.1335 9.6286 -5.0520 46 1 -1.5434 9.7040 -3.3737 47 1 -0.8414 12.0321 -3.6809 48 1 -2.5480 11.8764 -4.1665 49 1 -2.0301 14.8727 -8.9832 50 1 0.9165 12.1334 -5.7732 51 1 0.1515 12.0298 -7.3784 52 1 1.2080 9.8625 -6.6478 53 1 -0.5412 9.7199 -6.9465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338216.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:03 Heat of formation + Delta-G solvation = -89.063201 kcal Electronic energy + Delta-G solvation = -29411.613722 eV Core-core repulsion = 25317.082144 eV Total energy + Delta-G solvation = -4094.531578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31114 -40.84835 -39.32736 -37.58066 -36.36169 -35.84509 -34.08779 -33.46870 -32.28094 -31.95543 -31.15110 -30.33582 -26.88636 -25.42825 -24.57123 -24.26039 -23.40229 -22.00101 -21.82118 -21.41996 -21.19168 -19.52034 -18.66767 -18.19991 -17.52381 -17.23593 -16.99460 -16.84009 -16.16748 -15.93879 -15.62687 -15.42060 -15.30120 -15.11783 -14.97214 -14.71045 -14.57172 -14.50570 -14.33012 -14.27289 -14.11887 -13.75466 -13.45835 -13.26075 -12.87476 -12.66748 -12.58402 -12.54303 -12.46356 -12.26269 -12.24928 -12.01075 -11.95317 -11.77149 -11.62432 -11.54917 -11.42843 -11.29194 -10.90271 -10.69889 -10.34388 -10.08390 -9.75047 -8.95668 -8.15166 -5.47331 1.30253 1.44210 1.52782 1.58562 1.64417 2.18252 2.30622 2.42619 3.07172 3.26982 3.38815 3.66886 3.77375 3.80443 4.00771 4.04556 4.08754 4.13865 4.19754 4.25553 4.33840 4.49082 4.50383 4.54199 4.64811 4.64913 4.69983 4.75261 4.85394 4.86588 4.88223 4.92691 4.98202 5.00285 5.05533 5.08809 5.14136 5.18193 5.18847 5.27791 5.40843 5.41985 5.46986 5.58479 5.59165 5.87814 6.06394 6.14056 6.58320 6.91657 7.17016 7.29884 7.62323 7.63520 8.03185 9.04603 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.036040 B = 0.001581 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.735911 B =17709.490123 C =17919.456839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.136 3.864 4 H 0.060 0.940 5 C -0.161 4.161 6 N -0.709 5.709 7 C 0.513 3.487 8 O -0.589 6.589 9 C -0.137 4.137 10 C 0.158 3.842 11 N -0.728 5.728 12 C 0.698 3.302 13 O -0.639 6.639 14 N -0.724 5.724 15 C 0.178 3.822 16 C -0.128 4.128 17 C 0.146 3.854 18 N -0.618 5.618 19 C -0.249 4.249 20 H 0.053 0.947 21 C -0.031 4.031 22 N -0.955 5.955 23 Si 0.943 3.057 24 H -0.267 1.267 25 H -0.311 1.311 26 H -0.268 1.268 27 C 0.120 3.880 28 C -0.125 4.125 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.418 0.582 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.417 0.583 43 H 0.412 0.588 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.262 0.738 50 H 0.030 0.970 51 H 0.060 0.940 52 H 0.090 0.910 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 -36.668 9.769 39.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.219 4.219 6 N -0.362 5.362 7 C 0.300 3.700 8 O -0.469 6.469 9 C -0.176 4.176 10 C 0.033 3.967 11 N -0.386 5.386 12 C 0.398 3.602 13 O -0.520 6.520 14 N -0.379 5.379 15 C 0.072 3.928 16 C -0.168 4.168 17 C 0.021 3.979 18 N -0.343 5.343 19 C -0.379 4.379 20 H 0.071 0.929 21 C -0.226 4.226 22 N -0.601 5.601 23 Si 0.772 3.228 24 H -0.193 1.193 25 H -0.240 1.240 26 H -0.193 1.193 27 C -0.005 4.005 28 C -0.164 4.164 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.255 0.745 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.254 0.746 43 H 0.249 0.751 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.044 0.956 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.048 0.952 51 H 0.078 0.922 52 H 0.109 0.891 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.849 -35.544 11.271 38.834 hybrid contribution 0.235 0.493 -0.861 1.020 sum 11.083 -35.051 10.409 38.207 Atomic orbital electron populations 1.21792 0.95515 1.02206 1.01709 1.21787 0.96218 0.93586 1.04379 1.21027 0.94953 0.94127 0.86733 0.92194 1.22143 0.95201 1.01281 1.03266 1.45959 1.69730 1.06170 1.14374 1.20865 0.76024 0.82866 0.90257 1.90762 1.52087 1.65243 1.38791 1.21738 1.07107 0.92671 0.96131 1.20660 0.99641 0.91547 0.84897 1.44770 1.74705 1.04329 1.14766 1.16161 0.77914 0.82662 0.83506 1.90925 1.59669 1.65144 1.36266 1.45031 1.73542 1.07516 1.11782 1.20505 0.96505 0.78840 0.96917 1.22208 0.97303 0.96551 1.00724 1.21005 0.99067 0.92676 0.85165 1.44502 1.18346 1.56651 1.14766 1.18872 0.89299 1.13484 1.16209 0.92920 1.25861 1.01324 0.98094 0.97348 1.69964 1.37969 1.35649 1.16540 0.85965 0.82088 0.76239 0.78479 1.19310 1.24028 1.19274 1.21382 0.87199 0.94488 0.97426 1.22144 1.03082 0.95939 0.95252 0.92331 0.91542 0.94036 0.89427 0.89740 0.90746 0.90859 0.94760 0.74474 0.84737 0.84827 0.93718 0.93610 0.74567 0.75097 0.91858 0.91642 0.92163 0.95597 0.92336 0.92916 0.95246 0.92191 0.89135 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.80 71.98 0.71 -0.13 16 2 C -0.12 -0.49 5.47 30.60 0.17 -0.32 16 3 C 0.14 1.31 2.57 44.99 0.12 1.42 16 4 H 0.06 0.95 7.58 -2.39 -0.02 0.93 16 5 C -0.16 -1.57 9.48 71.98 0.68 -0.89 16 6 N -0.71 -5.43 4.53 -442.55 -2.00 -7.43 16 7 C 0.51 7.41 7.79 87.66 0.68 8.10 16 8 O -0.59 -15.43 15.65 -3.04 -0.05 -15.48 16 9 C -0.14 -1.06 5.81 29.85 0.17 -0.88 16 10 C 0.16 2.98 4.96 86.38 0.43 3.40 16 11 N -0.73 -12.30 5.56 -478.54 -2.66 -14.96 16 12 C 0.70 18.95 8.53 179.06 1.53 20.47 16 13 O -0.64 -24.66 16.01 -3.99 -0.06 -24.73 16 14 N -0.72 -17.02 5.08 -457.69 -2.33 -19.34 16 15 C 0.18 5.52 2.42 45.02 0.11 5.63 16 16 C -0.13 -4.37 5.65 30.67 0.17 -4.19 16 17 C 0.15 6.02 6.52 86.36 0.56 6.59 16 18 N -0.62 -29.34 2.77 -699.09 -1.94 -31.27 16 19 C -0.25 -14.20 10.03 84.03 0.84 -13.35 16 20 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 21 C -0.03 -1.83 5.23 84.86 0.44 -1.39 16 22 N -0.96 -59.77 13.97 21.65 0.30 -59.47 16 23 Si 0.94 46.54 24.35 68.60 1.67 48.21 16 24 H -0.27 -12.11 6.62 99.48 0.66 -11.45 16 25 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 26 H -0.27 -12.99 6.63 99.48 0.66 -12.33 16 27 C 0.12 5.00 4.20 86.36 0.36 5.36 16 28 C -0.12 -3.86 5.55 30.67 0.17 -3.68 16 29 H 0.06 0.28 7.75 -2.38 -0.02 0.26 16 30 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.03 0.53 8.14 -2.39 -0.02 0.52 16 37 H 0.42 0.16 8.60 -92.71 -0.80 -0.64 16 38 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 41 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 42 H 0.42 3.17 8.49 -92.71 -0.79 2.38 16 43 H 0.41 6.50 8.62 -92.71 -0.80 5.70 16 44 H 0.06 2.27 7.58 -2.39 -0.02 2.26 16 45 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 49 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 50 H 0.03 1.22 7.07 -2.39 -0.02 1.20 16 51 H 0.06 2.70 4.50 -2.39 -0.01 2.68 16 52 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -85.50 416.96 -1.48 -86.98 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -1.56 Total: 11.36 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 7.15 Total: 26.13 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -8.62 Total: -132.48 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -0.11 Total: -40.21 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.67 Total: 48.21 kcal Total: -85.50 -1.48 -86.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338216.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.082 kcal (2) G-P(sol) polarization free energy of solvation -85.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds