Wall clock time and date at job start Sat Apr 11 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46968 * 2 1 4 4 H 1.08999 * 109.46804 * 305.00027 * 3 2 1 5 5 C 1.53002 * 109.46731 * 185.00044 * 3 2 1 6 6 N 1.46497 * 109.46806 * 65.00313 * 3 2 1 7 7 C 1.34780 * 119.99472 * 204.99768 * 6 3 2 8 8 O 1.21285 * 120.00364 * 359.97438 * 7 6 3 9 9 C 1.50702 * 119.99921 * 179.97438 * 7 6 3 10 10 C 1.52997 * 109.47215 * 179.97438 * 9 7 6 11 11 N 1.46501 * 109.47261 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99966 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99924 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99494 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99693 * 180.02562 * 14 12 11 16 16 C 1.53045 * 109.46065 * 275.03064 * 15 14 12 17 17 C 1.53187 * 109.31145 * 178.60066 * 16 15 14 18 18 N 1.46931 * 108.76917 * 54.65309 * 17 16 15 19 19 C 1.36937 * 120.62793 * 126.40344 * 18 17 16 20 20 H 1.07997 * 120.00327 * 331.82300 * 19 18 17 21 21 C 1.38817 * 119.99487 * 151.83232 * 19 18 17 22 22 N 1.31615 * 119.99832 * 343.07025 * 21 19 18 23 23 Si 1.86805 * 119.99858 * 163.07902 * 21 19 18 24 24 H 1.48498 * 109.47298 * 59.99221 * 23 21 19 25 25 H 1.48494 * 109.47009 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46907 * 299.99119 * 23 21 19 27 27 C 1.46922 * 118.73919 * 306.38563 * 18 17 16 28 28 C 1.53035 * 109.46204 * 154.97268 * 15 14 12 29 29 H 1.08996 * 109.46820 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46860 * 299.99955 * 1 2 3 31 31 H 1.08997 * 109.46825 * 59.99960 * 1 2 3 32 32 H 1.09004 * 109.46890 * 240.00209 * 2 1 3 33 33 H 1.08992 * 109.47130 * 120.00384 * 2 1 3 34 34 H 1.09000 * 109.46992 * 59.99998 * 5 3 2 35 35 H 1.08997 * 109.47060 * 299.99906 * 5 3 2 36 36 H 1.08995 * 109.46827 * 179.97438 * 5 3 2 37 37 H 0.96992 * 120.00810 * 24.99845 * 6 3 2 38 38 H 1.08998 * 109.47372 * 300.00451 * 9 7 6 39 39 H 1.09007 * 109.46749 * 60.00236 * 9 7 6 40 40 H 1.09007 * 109.47416 * 300.00210 * 10 9 7 41 41 H 1.09000 * 109.47404 * 60.00225 * 10 9 7 42 42 H 0.97001 * 119.99736 * 359.97438 * 11 10 9 43 43 H 0.96999 * 120.00426 * 0.02562 * 14 12 11 44 44 H 1.09005 * 109.46185 * 34.99903 * 15 14 12 45 45 H 1.08997 * 109.49271 * 298.56473 * 16 15 14 46 46 H 1.09000 * 109.49772 * 58.66272 * 16 15 14 47 47 H 1.09003 * 109.60174 * 294.86802 * 17 16 15 48 48 H 1.09006 * 109.70691 * 174.50193 * 17 16 15 49 49 H 0.97002 * 119.99863 * 180.02562 * 22 21 19 50 50 H 1.09007 * 109.58636 * 293.82013 * 27 18 17 51 51 H 1.08994 * 109.70829 * 173.46284 * 27 18 17 52 52 H 1.09003 * 109.49771 * 301.34183 * 28 15 14 53 53 H 1.08999 * 109.49689 * 61.40312 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5257 3.4384 1.2996 8 8 1.7328 4.1029 0.3064 9 6 1.1264 4.1121 2.5872 10 6 1.0558 5.6250 2.3706 11 7 0.6683 6.2800 3.6224 12 6 0.5416 7.6210 3.6702 13 8 0.7494 8.2871 2.6745 14 7 0.1846 8.2234 4.8217 15 6 0.0463 9.6810 4.8736 16 6 1.4147 10.3139 5.1367 17 6 1.2722 11.8390 5.1555 18 7 0.2398 12.2054 6.1347 19 6 0.5094 13.1089 7.1278 20 1 1.5178 13.2195 7.4981 21 6 -0.5138 13.8824 7.6586 22 7 -1.6523 14.0029 7.0095 23 14 -0.2744 14.7526 9.2942 24 1 0.8704 15.6929 9.1918 25 1 -1.5058 15.5080 9.6378 26 1 0.0027 13.7489 10.3530 27 6 -1.0874 11.5842 6.0277 28 6 -0.9184 10.0619 5.9988 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8532 0.9570 -1.0571 35 1 3.9994 0.9053 0.7161 36 1 3.9281 2.4719 -0.1262 37 1 1.4872 1.5661 2.0463 38 1 0.1502 3.7438 2.9025 39 1 1.8648 3.8898 3.3576 40 1 2.0324 5.9930 2.0555 41 1 0.3178 5.8477 1.6000 42 1 0.5022 5.7485 4.4166 43 1 0.0193 7.6920 5.6162 44 1 -0.3442 10.0428 3.9224 45 1 1.7945 9.9719 6.0994 46 1 2.1079 10.0232 4.3474 47 1 0.9790 12.1911 4.1665 48 1 2.2218 12.2935 5.4385 49 1 -2.3671 14.5438 7.3803 50 1 -1.5730 11.9155 5.1097 51 1 -1.6963 11.8681 6.8860 52 1 -1.8860 9.5917 5.8232 53 1 -0.5166 9.7218 6.9532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338217.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:06 Heat of formation + Delta-G solvation = -92.778821 kcal Electronic energy + Delta-G solvation = -29314.111265 eV Core-core repulsion = 25219.418566 eV Total energy + Delta-G solvation = -4094.692699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29138 -40.83306 -39.11857 -37.57238 -36.30983 -35.82180 -33.96871 -33.44245 -32.12778 -31.58806 -30.93065 -30.26946 -26.96375 -25.45746 -24.43116 -23.90196 -23.45980 -21.97301 -21.78787 -21.41277 -21.03892 -19.44601 -18.59279 -18.18510 -17.27671 -17.22008 -16.96912 -16.74991 -16.13653 -15.81947 -15.47734 -15.33736 -15.26171 -15.03044 -14.92195 -14.74846 -14.55502 -14.45021 -14.28731 -14.11028 -14.00914 -13.26123 -13.19560 -12.98527 -12.87053 -12.66308 -12.56320 -12.52801 -12.47256 -12.24820 -12.21256 -12.01803 -11.95025 -11.85656 -11.62103 -11.55472 -11.41272 -11.23927 -10.89221 -10.53814 -10.33100 -10.08024 -9.72850 -8.69460 -7.86209 -5.32151 1.50334 1.51665 1.59128 1.59999 1.64628 2.18868 2.31232 2.53633 3.27359 3.36088 3.66271 3.69063 3.77779 3.92581 4.04768 4.07886 4.09451 4.14262 4.20163 4.36453 4.48134 4.49395 4.54393 4.65246 4.66731 4.75656 4.82602 4.85610 4.86747 4.88302 4.93851 5.00340 5.06509 5.08517 5.14495 5.17871 5.19225 5.28164 5.30955 5.42384 5.45557 5.49232 5.59434 5.62054 5.66027 5.72102 6.08284 6.40289 6.58700 7.15881 7.18601 7.30273 7.64573 7.85198 8.38783 9.20822 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.039099 B = 0.001508 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.958065 B =18568.617202 C =18777.528778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.136 3.864 4 H 0.060 0.940 5 C -0.161 4.161 6 N -0.709 5.709 7 C 0.513 3.487 8 O -0.589 6.589 9 C -0.136 4.136 10 C 0.157 3.843 11 N -0.727 5.727 12 C 0.697 3.303 13 O -0.641 6.641 14 N -0.723 5.723 15 C 0.180 3.820 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.266 4.266 20 H 0.067 0.933 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.178 3.822 28 C -0.126 4.126 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.418 0.582 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.417 0.583 43 H 0.412 0.588 44 H 0.051 0.949 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.004 0.996 48 H 0.057 0.943 49 H 0.251 0.749 50 H -0.008 1.008 51 H 0.065 0.935 52 H 0.077 0.923 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -35.690 -5.919 36.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.219 4.219 6 N -0.362 5.362 7 C 0.300 3.700 8 O -0.469 6.469 9 C -0.176 4.176 10 C 0.032 3.968 11 N -0.385 5.385 12 C 0.397 3.603 13 O -0.522 6.522 14 N -0.378 5.378 15 C 0.074 3.926 16 C -0.163 4.163 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.396 4.396 20 H 0.085 0.915 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.798 3.202 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.200 1.200 27 C 0.052 3.948 28 C -0.165 4.165 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.255 0.745 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.255 0.745 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.022 0.978 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.010 0.990 51 H 0.083 0.917 52 H 0.096 0.904 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.247 -34.558 -7.490 35.747 hybrid contribution -0.265 0.587 1.189 1.352 sum 4.982 -33.971 -6.301 34.908 Atomic orbital electron populations 1.21791 0.95497 1.02213 1.01710 1.21787 0.96236 0.93548 1.04389 1.21031 0.94942 0.94149 0.86721 0.92203 1.22146 0.95221 1.01265 1.03276 1.45953 1.69730 1.06141 1.14390 1.20864 0.76012 0.82886 0.90253 1.90764 1.52036 1.65255 1.38836 1.21736 1.07188 0.92541 0.96120 1.20665 0.99658 0.91609 0.84853 1.44763 1.74886 1.04189 1.14691 1.16192 0.77997 0.82680 0.83473 1.90924 1.59456 1.65274 1.36561 1.45063 1.73708 1.07447 1.11568 1.20487 0.95434 0.78210 0.98432 1.22175 0.96920 0.96155 1.01090 1.20968 0.92558 0.93485 0.91232 1.44333 1.09658 1.47900 1.31239 1.19504 0.95195 1.13729 1.11219 0.91482 1.25828 0.97266 0.98676 1.02626 1.70185 1.06433 1.42888 1.38639 0.85302 0.76558 0.78207 0.80108 1.20409 1.22061 1.19993 1.20575 0.86749 0.88777 0.98719 1.22245 0.98717 0.97823 0.97762 0.91513 0.92322 0.94050 0.89728 0.89414 0.90722 0.90848 0.94809 0.74456 0.84726 0.84757 0.93728 0.93718 0.74545 0.75123 0.93034 0.91261 0.92689 0.97814 0.92419 0.94009 0.98968 0.91689 0.90413 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.80 71.98 0.71 -0.18 16 2 C -0.12 -0.54 5.47 30.60 0.17 -0.37 16 3 C 0.14 1.39 2.57 44.99 0.12 1.50 16 4 H 0.06 0.99 7.58 -2.39 -0.02 0.97 16 5 C -0.16 -1.68 9.48 71.98 0.68 -0.99 16 6 N -0.71 -5.91 4.53 -442.52 -2.00 -7.91 16 7 C 0.51 7.87 7.79 87.66 0.68 8.56 16 8 O -0.59 -16.02 15.65 -3.05 -0.05 -16.07 16 9 C -0.14 -1.20 5.81 29.85 0.17 -1.02 16 10 C 0.16 3.21 4.96 86.38 0.43 3.64 16 11 N -0.73 -13.62 5.56 -478.52 -2.66 -16.28 16 12 C 0.70 20.72 8.53 179.05 1.53 22.25 16 13 O -0.64 -26.67 16.01 -3.99 -0.06 -26.74 16 14 N -0.72 -19.10 5.08 -457.68 -2.33 -21.43 16 15 C 0.18 6.32 2.42 45.02 0.11 6.43 16 16 C -0.12 -4.58 5.65 30.67 0.17 -4.40 16 17 C 0.14 6.46 6.52 86.36 0.56 7.02 16 18 N -0.61 -31.18 2.99 -699.08 -2.09 -33.28 16 19 C -0.27 -14.77 9.58 84.03 0.81 -13.96 16 20 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 21 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 22 N -0.94 -55.49 11.19 21.65 0.24 -55.25 16 23 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 C 0.18 8.60 5.30 86.36 0.46 9.06 16 28 C -0.13 -4.48 5.55 30.67 0.17 -4.31 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.30 7.75 -2.39 -0.02 0.28 16 31 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 0.31 8.14 -2.38 -0.02 0.30 16 33 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.42 0.41 8.60 -92.71 -0.80 -0.39 16 38 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.13 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.04 1.18 8.10 -2.38 -0.02 1.16 16 41 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 42 H 0.42 3.81 8.49 -92.71 -0.79 3.03 16 43 H 0.41 7.49 8.62 -92.71 -0.80 6.69 16 44 H 0.05 2.16 7.58 -2.38 -0.02 2.14 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.06 2.51 7.93 -2.38 -0.02 2.49 16 49 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 50 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 51 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 52 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 53 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -83.71 423.42 -1.22 -84.92 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -1.47 Total: 14.51 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 7.18 Total: 30.93 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -8.84 Total: -134.14 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.11 Total: -42.80 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.71 -1.22 -84.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338217.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.856 kcal (2) G-P(sol) polarization free energy of solvation -83.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds