Wall clock time and date at job start Sat Apr 11 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47326 * 2 1 4 4 H 1.09005 * 109.46826 * 55.00046 * 3 2 1 5 5 C 1.52997 * 109.47467 * 175.00256 * 3 2 1 6 6 N 1.46502 * 109.47337 * 295.00417 * 3 2 1 7 7 C 1.34772 * 120.00308 * 154.99753 * 6 3 2 8 8 O 1.21281 * 119.99985 * 359.97438 * 7 6 3 9 9 C 1.50706 * 120.00000 * 179.97438 * 7 6 3 10 10 H 1.08999 * 109.47220 * 300.00153 * 9 7 6 11 11 C 1.53005 * 109.46946 * 60.00161 * 9 7 6 12 12 N 1.46495 * 109.46866 * 179.97438 * 9 7 6 13 13 C 1.34784 * 119.99786 * 155.00075 * 12 9 7 14 14 O 1.21589 * 119.99732 * 0.02562 * 13 12 9 15 15 N 1.34770 * 120.00062 * 180.02562 * 13 12 9 16 16 C 1.46504 * 119.99878 * 179.97438 * 15 13 12 17 17 C 1.53041 * 109.46096 * 275.02494 * 16 15 13 18 18 C 1.53185 * 109.31236 * 178.60218 * 17 16 15 19 19 N 1.46931 * 108.76759 * 54.65682 * 18 17 16 20 20 C 1.36931 * 120.63273 * 126.36424 * 19 18 17 21 21 H 1.08002 * 119.99911 * 208.02625 * 20 19 18 22 22 C 1.38810 * 119.99994 * 28.01745 * 20 19 18 23 23 N 1.31624 * 120.00313 * 17.52952 * 22 20 19 24 24 Si 1.86805 * 119.99939 * 197.52432 * 22 20 19 25 25 H 1.48508 * 109.46839 * 94.07175 * 24 22 20 26 26 H 1.48498 * 109.47299 * 214.06804 * 24 22 20 27 27 H 1.48493 * 109.47529 * 334.07233 * 24 22 20 28 28 C 1.46928 * 118.73485 * 306.38398 * 19 18 17 29 29 C 1.53045 * 109.45944 * 154.97182 * 16 15 13 30 30 H 1.09002 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46845 * 300.00057 * 1 2 3 32 32 H 1.08999 * 109.46924 * 59.99970 * 1 2 3 33 33 H 1.08997 * 109.47436 * 240.00408 * 2 1 3 34 34 H 1.09004 * 109.47357 * 119.99936 * 2 1 3 35 35 H 1.09007 * 109.46848 * 299.99794 * 5 3 2 36 36 H 1.08996 * 109.47327 * 59.99886 * 5 3 2 37 37 H 1.09002 * 109.47267 * 180.02562 * 5 3 2 38 38 H 0.97004 * 119.99578 * 334.99999 * 6 3 2 39 39 H 1.08999 * 109.47167 * 59.99960 * 11 9 7 40 40 H 1.08996 * 109.46773 * 299.99927 * 11 9 7 41 41 H 1.08996 * 109.46668 * 179.97438 * 11 9 7 42 42 H 0.97003 * 120.00761 * 335.00215 * 12 9 7 43 43 H 0.97003 * 120.00485 * 359.97438 * 15 13 12 44 44 H 1.08997 * 109.45907 * 34.99939 * 16 15 13 45 45 H 1.08998 * 109.49633 * 298.56928 * 17 16 15 46 46 H 1.08997 * 109.49670 * 58.66502 * 17 16 15 47 47 H 1.09005 * 109.59952 * 294.87198 * 18 17 16 48 48 H 1.08996 * 109.70785 * 174.50868 * 18 17 16 49 49 H 0.96993 * 120.00389 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.58809 * 293.81603 * 28 19 18 51 51 H 1.09005 * 109.70103 * 173.46388 * 28 19 18 52 52 H 1.09000 * 109.49611 * 301.34070 * 29 16 15 53 53 H 1.09002 * 109.49687 * 61.39804 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0976 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7319 4.1028 -0.3061 9 6 1.1274 4.1123 -2.5874 10 1 1.8663 3.8901 -3.3573 11 6 -0.2426 3.5954 -3.0310 12 7 1.0585 5.5608 -2.3795 13 6 1.2232 6.3997 -3.4215 14 8 1.4285 5.9542 -4.5340 15 7 1.1602 7.7323 -3.2303 16 6 1.3398 8.6441 -4.3628 17 6 2.8334 8.8936 -4.5846 18 6 3.0186 9.8194 -5.7909 19 7 2.2287 11.0396 -5.5762 20 6 2.8142 12.2743 -5.6636 21 1 2.4146 13.1028 -5.0976 22 6 3.9215 12.4610 -6.4796 23 7 4.2038 11.5818 -7.4176 24 14 5.0112 13.9604 -6.2466 25 1 6.1459 13.6136 -5.3536 26 1 5.5352 14.4011 -7.5644 27 1 4.2189 15.0582 -5.6367 28 6 0.7986 10.9096 -5.2653 29 6 0.6382 9.9713 -4.0651 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 0.9570 1.0571 36 1 3.9995 0.9054 -0.7161 37 1 3.9281 2.4721 0.1261 38 1 1.4870 1.5661 -2.0462 39 1 -0.9815 3.8176 -2.2611 40 1 -0.1917 2.5177 -3.1855 41 1 -0.5307 4.0832 -3.9622 42 1 0.8943 5.9163 -1.4920 43 1 0.9960 8.0878 -2.3428 44 1 0.9089 8.1987 -5.2594 45 1 3.2597 9.3619 -3.6975 46 1 3.3365 7.9454 -4.7734 47 1 2.6748 9.3159 -6.6945 48 1 4.0718 10.0798 -5.8961 49 1 4.9773 11.7125 -7.9880 50 1 0.2738 10.4950 -6.1259 51 1 0.3850 11.8883 -5.0218 52 1 -0.4213 9.7901 -3.8839 53 1 1.0850 10.4291 -3.1825 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338317.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:17 Heat of formation + Delta-G solvation = -85.865838 kcal Electronic energy + Delta-G solvation = -30284.998868 eV Core-core repulsion = 26190.605938 eV Total energy + Delta-G solvation = -4094.392930 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.64968 -40.73964 -39.10920 -37.58924 -36.26822 -35.73334 -34.06140 -33.46280 -32.00784 -31.55402 -30.83460 -30.15325 -26.92612 -25.81575 -24.60646 -23.90243 -23.68496 -22.13713 -21.65900 -21.38909 -21.04138 -19.74920 -18.78395 -17.95422 -17.61628 -17.10605 -16.86531 -16.52652 -15.99389 -15.78246 -15.66519 -15.34555 -15.27868 -14.89369 -14.80634 -14.69733 -14.52827 -14.38130 -14.31213 -14.02430 -13.70564 -13.35581 -13.22260 -13.17436 -13.01396 -12.68127 -12.66255 -12.62003 -12.58935 -12.25001 -12.11295 -12.01969 -11.93861 -11.85134 -11.62196 -11.52710 -11.43265 -11.20929 -10.96382 -10.57920 -10.35902 -10.14920 -9.79836 -8.70783 -7.86743 -5.32617 1.46520 1.47295 1.48569 1.49924 1.58369 2.12251 2.23887 2.52038 3.22553 3.30825 3.56318 3.68287 3.81309 3.89693 4.02082 4.06875 4.10939 4.15723 4.19992 4.36026 4.48995 4.50399 4.62432 4.63996 4.68356 4.76249 4.77608 4.81088 4.84754 4.88838 4.99373 5.05614 5.09869 5.14318 5.15111 5.18661 5.20177 5.27315 5.33391 5.38478 5.44325 5.46793 5.52546 5.60869 5.64966 5.70442 5.98791 6.39432 6.44227 7.06057 7.12837 7.14168 7.57763 7.85219 8.38079 9.20364 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.001914 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.977706 B =14628.795631 C =15123.233321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C 0.139 3.861 4 H 0.071 0.929 5 C -0.163 4.163 6 N -0.704 5.704 7 C 0.518 3.482 8 O -0.570 6.570 9 C 0.142 3.858 10 H 0.105 0.895 11 C -0.151 4.151 12 N -0.724 5.724 13 C 0.705 3.295 14 O -0.629 6.629 15 N -0.726 5.726 16 C 0.182 3.818 17 C -0.131 4.131 18 C 0.183 3.817 19 N -0.609 5.609 20 C -0.260 4.260 21 H 0.074 0.926 22 C -0.055 4.055 23 N -0.938 5.938 24 Si 0.969 3.031 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.264 1.264 28 C 0.142 3.858 29 C -0.122 4.122 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.415 0.585 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.410 0.590 43 H 0.409 0.591 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.044 0.956 47 H -0.008 1.008 48 H 0.054 0.946 49 H 0.249 0.751 50 H 0.014 0.986 51 H 0.068 0.932 52 H 0.092 0.908 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.855 -25.485 17.452 32.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C 0.035 3.965 4 H 0.089 0.911 5 C -0.222 4.222 6 N -0.357 5.357 7 C 0.304 3.696 8 O -0.449 6.449 9 C 0.033 3.967 10 H 0.123 0.877 11 C -0.209 4.209 12 N -0.382 5.382 13 C 0.405 3.595 14 O -0.510 6.510 15 N -0.380 5.380 16 C 0.077 3.923 17 C -0.171 4.171 18 C 0.056 3.944 19 N -0.333 5.333 20 C -0.390 4.390 21 H 0.091 0.909 22 C -0.250 4.250 23 N -0.584 5.584 24 Si 0.797 3.203 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.188 1.188 28 C 0.016 3.984 29 C -0.161 4.161 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.253 0.747 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.247 0.753 43 H 0.245 0.755 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.010 0.990 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.032 0.968 51 H 0.086 0.914 52 H 0.110 0.890 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.426 -25.414 17.061 32.028 hybrid contribution 0.851 0.985 -0.044 1.303 sum -8.575 -24.429 17.017 30.982 Atomic orbital electron populations 1.21792 0.95244 1.02287 1.01873 1.21803 0.96475 0.93407 1.04417 1.21105 0.94857 0.94266 0.86230 0.91126 1.22174 0.95334 1.01304 1.03344 1.45930 1.69237 1.05714 1.14803 1.20616 0.76198 0.83352 0.89447 1.90692 1.51801 1.64911 1.37527 1.20674 1.01003 0.79948 0.95087 0.87695 1.22107 0.93895 1.02848 1.02064 1.44736 1.77760 1.05017 1.10641 1.16009 0.77538 0.81766 0.84220 1.90904 1.58393 1.77143 1.24532 1.45131 1.76784 1.03518 1.12579 1.20524 0.94663 0.89025 0.88095 1.22329 0.96884 0.98293 0.99642 1.20463 0.96486 0.85365 0.92045 1.44347 1.04508 1.02019 1.82388 1.19578 1.10958 0.88891 1.19607 0.90885 1.25866 1.02705 1.00922 0.95517 1.70211 1.28769 1.39098 1.20305 0.85231 0.79008 0.79631 0.76452 1.21524 1.22370 1.18806 1.21039 0.84688 0.98139 0.94533 1.22146 1.00769 0.93535 0.99659 0.91546 0.93512 0.92458 0.89831 0.89307 0.90203 0.91345 0.94798 0.74710 0.91380 0.88228 0.92329 0.75269 0.75513 0.92149 0.92449 0.93766 0.99027 0.92801 0.94193 0.96785 0.91351 0.88994 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.80 71.98 0.71 -0.21 16 2 C -0.12 -0.65 5.47 30.59 0.17 -0.48 16 3 C 0.14 1.51 2.57 44.99 0.12 1.63 16 4 H 0.07 1.07 7.58 -2.38 -0.02 1.05 16 5 C -0.16 -1.94 9.48 71.98 0.68 -1.26 16 6 N -0.70 -7.95 4.42 -442.52 -1.96 -9.91 16 7 C 0.52 9.50 7.19 87.66 0.63 10.13 16 8 O -0.57 -14.55 15.50 -3.03 -0.05 -14.60 16 9 C 0.14 2.72 2.99 44.25 0.13 2.85 16 10 H 0.11 2.25 7.58 -2.39 -0.02 2.24 16 11 C -0.15 -2.14 9.38 71.98 0.68 -1.47 16 12 N -0.72 -16.83 4.96 -461.40 -2.29 -19.11 16 13 C 0.70 21.48 8.50 179.05 1.52 23.00 16 14 O -0.63 -24.35 15.67 -4.00 -0.06 -24.41 16 15 N -0.73 -20.45 5.08 -457.67 -2.33 -22.77 16 16 C 0.18 6.39 2.42 45.02 0.11 6.50 16 17 C -0.13 -5.48 5.65 30.67 0.17 -5.31 16 18 C 0.18 9.45 5.31 86.36 0.46 9.91 16 19 N -0.61 -31.13 2.99 -699.11 -2.09 -33.22 16 20 C -0.26 -14.42 9.58 84.03 0.81 -13.61 16 21 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 22 C -0.05 -3.13 4.90 84.86 0.42 -2.72 16 23 N -0.94 -57.36 11.22 21.65 0.24 -57.11 16 24 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 27 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 28 C 0.14 5.78 6.51 86.36 0.56 6.34 16 29 C -0.12 -3.84 5.55 30.67 0.17 -3.67 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.33 7.75 -2.39 -0.02 0.32 16 33 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.09 0.34 8.14 -2.38 -0.02 0.33 16 35 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.42 2.42 8.02 -92.71 -0.74 1.67 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.75 7.56 -2.39 -0.02 0.74 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.41 8.54 7.80 -92.71 -0.72 7.81 16 43 H 0.41 8.86 8.62 -92.71 -0.80 8.06 16 44 H 0.06 2.43 7.57 -2.39 -0.02 2.41 16 45 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 47 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 48 H 0.05 3.13 6.06 -2.39 -0.01 3.12 16 49 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 50 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.07 2.63 7.94 -2.38 -0.02 2.61 16 52 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 53 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -76.69 420.87 -0.53 -77.22 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -1.35 Total: 24.63 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: 7.32 Total: 31.63 kcal Atomic # 7 Polarization: -133.71 SS G_CDS: -8.42 Total: -142.13 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.11 Total: -39.01 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -76.69 -0.53 -77.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338317.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.645 kcal (2) G-P(sol) polarization free energy of solvation -76.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds