Wall clock time and date at job start Sat Apr 11 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 11 11 C 1.53190 * 108.89356 * 126.30089 * 10 9 7 12 12 C 1.53352 * 109.15070 * 54.57285 * 11 10 9 13 13 N 1.46504 * 109.41782 * 178.67570 * 12 11 10 14 14 C 1.34778 * 120.00011 * 275.12821 * 13 12 11 15 15 O 1.21582 * 120.00256 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99808 * 180.02562 * 14 13 12 17 17 C 1.46493 * 120.00034 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47244 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.47040 * 179.97438 * 18 17 16 20 20 N 1.46901 * 109.46760 * 180.02562 * 19 18 17 21 21 C 1.47016 * 110.99887 * 293.63273 * 20 19 18 22 22 C 1.53101 * 109.25821 * 177.61158 * 21 20 19 23 23 O 1.43010 * 109.25871 * 56.84737 * 22 21 20 24 24 C 1.43018 * 113.74143 * 301.33496 * 23 22 21 25 25 C 1.47014 * 110.99843 * 170.00617 * 20 19 18 26 26 C 1.53037 * 109.61060 * 298.71684 * 12 11 10 27 27 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 28 28 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58551 * 246.15355 * 10 9 7 30 30 H 1.08997 * 109.59252 * 6.43657 * 10 9 7 31 31 H 1.09004 * 109.50240 * 174.65815 * 11 10 9 32 32 H 1.09004 * 109.49453 * 294.75209 * 11 10 9 33 33 H 1.09008 * 109.41936 * 58.75652 * 12 11 10 34 34 H 0.97003 * 119.99690 * 95.13436 * 13 12 11 35 35 H 0.97003 * 119.99893 * 0.02562 * 16 14 13 36 36 H 1.09005 * 109.47589 * 300.00029 * 17 16 14 37 37 H 1.09005 * 109.47356 * 60.00154 * 17 16 14 38 38 H 1.08991 * 109.47274 * 300.00033 * 18 17 16 39 39 H 1.08997 * 109.46770 * 60.00524 * 18 17 16 40 40 H 1.08991 * 109.47221 * 300.00197 * 19 18 17 41 41 H 1.09001 * 109.46925 * 60.00168 * 19 18 17 42 42 H 1.09002 * 109.50795 * 297.54576 * 21 20 19 43 43 H 1.09004 * 109.50597 * 57.67721 * 21 20 19 44 44 H 1.09006 * 109.50189 * 296.91912 * 22 21 20 45 45 H 1.08994 * 109.54500 * 176.80903 * 22 21 20 46 46 H 1.08995 * 109.50331 * 298.73217 * 24 23 22 47 47 H 1.09004 * 109.54207 * 178.62367 * 24 23 22 48 48 H 1.09007 * 109.50120 * 302.32408 * 25 20 19 49 49 H 1.08999 * 109.50828 * 62.40837 * 25 20 19 50 50 H 1.09003 * 109.49698 * 301.42330 * 26 12 11 51 51 H 1.08994 * 109.52761 * 181.33744 * 26 12 11 52 52 H 1.09002 * 109.58248 * 353.41531 * 27 9 7 53 53 H 1.08994 * 109.58922 * 113.70036 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2633 0.0944 11 6 4.8749 -2.9934 -1.0905 12 6 5.5284 -1.9650 -2.0216 13 7 6.1697 -2.6596 -3.1408 14 6 7.4200 -3.1443 -3.0056 15 8 8.0155 -3.0056 -1.9547 16 7 8.0102 -3.7828 -4.0354 17 6 9.3690 -4.3102 -3.8883 18 6 9.7987 -4.9836 -5.1932 19 6 11.2181 -5.5339 -5.0397 20 7 11.6309 -6.1800 -6.2928 21 6 10.8243 -7.3803 -6.5572 22 6 11.2461 -7.9868 -7.8982 23 8 12.6471 -8.2721 -7.8669 24 6 13.4627 -7.1252 -7.6121 25 6 13.0633 -6.5101 -6.2683 26 6 4.4619 -1.0081 -2.5592 27 6 3.8176 -0.2585 -1.3888 28 1 -0.4850 0.8400 -0.0004 29 1 5.0117 -1.7882 0.6936 30 1 3.6843 -2.9758 0.7086 31 1 5.6299 -3.6892 -0.7244 32 1 4.1079 -3.5424 -1.6367 33 1 6.2778 -1.3994 -1.4678 34 1 5.6945 -2.7705 -3.9791 35 1 7.5352 -3.8931 -4.8739 36 1 10.0530 -3.4932 -3.6582 37 1 9.3898 -5.0402 -3.0791 38 1 9.1148 -5.8006 -5.4227 39 1 9.7779 -4.2539 -6.0026 40 1 11.9018 -4.7166 -4.8103 41 1 11.2394 -6.2635 -4.2301 42 1 10.9839 -8.1086 -5.7621 43 1 9.7694 -7.1085 -6.5965 44 1 11.0367 -7.2786 -8.6999 45 1 10.6908 -8.9084 -8.0723 46 1 13.3178 -6.3921 -8.4055 47 1 14.5107 -7.4232 -7.5789 48 1 13.6429 -5.6029 -6.0967 49 1 13.2588 -7.2238 -5.4681 50 1 3.6989 -1.5759 -3.0917 51 1 4.9239 -0.2926 -3.2393 52 1 2.9910 0.3503 -1.7554 53 1 4.5584 0.3816 -0.9099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609339901.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:20 Heat of formation + Delta-G solvation = -74.735813 kcal Electronic energy + Delta-G solvation = -29504.582338 eV Core-core repulsion = 25410.672042 eV Total energy + Delta-G solvation = -4093.910296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21183 -40.54038 -39.34492 -37.58802 -36.19352 -35.75854 -34.08956 -32.77825 -32.11250 -31.96747 -31.33119 -28.47544 -26.77982 -25.21863 -24.97458 -24.43988 -23.44295 -22.39707 -21.82799 -21.31086 -21.17992 -19.39381 -18.64900 -17.84646 -17.45050 -17.20082 -16.94525 -16.81594 -16.20937 -15.99961 -15.94108 -15.84060 -15.64784 -15.42666 -15.32632 -15.19611 -14.72598 -14.65626 -14.44872 -14.22585 -13.79472 -13.60030 -13.46195 -13.23188 -12.96475 -12.61872 -12.58183 -12.53712 -12.34798 -12.27361 -12.24997 -12.01849 -11.77649 -11.72220 -11.55322 -11.45304 -11.38340 -11.26011 -10.71048 -10.66628 -10.30952 -9.73195 -9.44046 -8.96059 -8.15497 -5.47789 1.30267 1.43900 1.52578 1.69663 2.19118 2.42353 2.70200 2.96460 3.06576 3.27229 3.39135 3.79378 3.84577 3.92696 3.97900 4.00039 4.05959 4.14234 4.20323 4.24687 4.30439 4.33423 4.39405 4.49468 4.52056 4.57055 4.64119 4.66176 4.69241 4.74692 4.76261 4.82085 4.88334 4.90973 4.93072 5.01049 5.04431 5.08105 5.13790 5.17529 5.19167 5.41464 5.52619 5.58781 5.87392 5.91984 5.93367 6.06116 6.13606 6.18203 6.91373 7.15156 7.62016 7.63080 8.02712 9.04258 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.037096 B = 0.001532 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.607060 B =18274.928151 C =18406.668418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.032 4.032 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.311 1.311 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.053 0.947 9 N -0.618 5.618 10 C 0.146 3.854 11 C -0.127 4.127 12 C 0.179 3.821 13 N -0.727 5.727 14 C 0.699 3.301 15 O -0.637 6.637 16 N -0.733 5.733 17 C 0.143 3.857 18 C -0.111 4.111 19 C 0.059 3.941 20 N -0.542 5.542 21 C 0.013 3.987 22 C 0.060 3.940 23 O -0.410 6.410 24 C 0.061 3.939 25 C 0.016 3.984 26 C -0.126 4.126 27 C 0.121 3.879 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.410 0.590 35 H 0.412 0.588 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.062 0.938 47 H 0.111 0.889 48 H 0.099 0.901 49 H 0.036 0.964 50 H 0.073 0.927 51 H 0.090 0.910 52 H 0.059 0.941 53 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.019 -13.678 -20.054 36.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.227 4.227 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.240 1.240 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.070 0.930 9 N -0.343 5.343 10 C 0.021 3.979 11 C -0.168 4.168 12 C 0.073 3.927 13 N -0.382 5.382 14 C 0.399 3.601 15 O -0.519 6.519 16 N -0.389 5.389 17 C 0.018 3.982 18 C -0.149 4.149 19 C -0.069 4.069 20 N -0.267 5.267 21 C -0.115 4.115 22 C -0.016 4.016 23 O -0.329 6.329 24 C -0.016 4.016 25 C -0.112 4.112 26 C -0.165 4.165 27 C -0.005 4.005 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.249 0.751 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.128 0.872 46 H 0.081 0.919 47 H 0.129 0.871 48 H 0.117 0.883 49 H 0.054 0.946 50 H 0.092 0.908 51 H 0.108 0.892 52 H 0.077 0.923 53 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 27.453 -13.342 -19.515 36.229 hybrid contribution -0.607 0.431 0.614 0.965 sum 26.846 -12.911 -18.901 35.280 Atomic orbital electron populations 1.69959 1.07357 1.27221 1.55617 1.25873 0.95803 1.00787 1.00229 0.85954 0.78544 0.80316 0.77888 1.19405 1.24038 1.19088 1.18868 0.86594 0.93626 1.38824 0.92971 1.44494 1.07737 1.34447 1.47602 1.21006 0.91783 0.90699 0.94428 1.22264 0.99124 0.97995 0.97371 1.20562 0.93287 0.92149 0.86674 1.45089 1.14468 1.61122 1.17500 1.16154 0.81508 0.78601 0.83885 1.90899 1.65935 1.65447 1.29584 1.44930 1.17652 1.61032 1.15325 1.21080 0.81462 0.97477 0.98198 1.21618 0.96110 1.00981 0.96176 1.21994 0.96714 0.98558 0.89635 1.62230 1.03709 1.25978 1.34807 1.22897 0.99691 0.91069 0.97801 1.22797 0.81330 1.01495 0.96024 1.87964 1.18105 1.34264 1.92553 1.22792 0.95595 0.87794 0.95389 1.22831 0.89157 1.01116 0.98072 1.22143 0.97510 0.98713 0.98148 1.21384 0.96903 0.92045 0.90135 0.92918 0.95399 0.92401 0.91939 0.91918 0.91624 0.75333 0.75135 0.92552 0.93048 0.90306 0.89605 0.89762 0.94671 0.94751 0.88052 0.91897 0.87250 0.91945 0.87090 0.88278 0.94585 0.90795 0.89203 0.92311 0.95070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.67 13.97 21.65 0.30 -59.37 16 2 C -0.03 -1.86 5.23 84.86 0.44 -1.42 16 3 Si 0.94 46.23 24.34 68.60 1.67 47.90 16 4 H -0.27 -12.09 6.62 99.48 0.66 -11.43 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.27 -12.72 6.63 99.48 0.66 -12.06 16 7 C -0.25 -14.15 10.04 84.03 0.84 -13.30 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 9 N -0.62 -29.05 2.77 -699.10 -1.94 -30.99 16 10 C 0.15 5.90 6.50 86.36 0.56 6.46 16 11 C -0.13 -4.26 5.68 30.78 0.17 -4.08 16 12 C 0.18 5.43 2.42 45.12 0.11 5.54 16 13 N -0.73 -16.90 5.08 -457.17 -2.32 -19.23 16 14 C 0.70 18.05 8.53 179.05 1.53 19.58 16 15 O -0.64 -22.75 16.01 -3.97 -0.06 -22.82 16 16 N -0.73 -12.10 5.56 -478.54 -2.66 -14.76 16 17 C 0.14 2.15 5.67 86.38 0.49 2.64 16 18 C -0.11 -0.98 5.26 30.60 0.16 -0.82 16 19 C 0.06 0.59 4.96 86.30 0.43 1.01 16 20 N -0.54 -5.74 4.73 -895.19 -4.23 -9.97 16 21 C 0.01 0.13 5.44 86.31 0.47 0.60 16 22 C 0.06 0.61 7.01 72.02 0.50 1.11 16 23 O -0.41 -5.90 10.83 -148.98 -1.61 -7.51 16 24 C 0.06 0.60 7.01 72.01 0.50 1.11 16 25 C 0.02 0.16 5.64 86.31 0.49 0.65 16 26 C -0.13 -3.87 5.55 30.67 0.17 -3.70 16 27 C 0.12 4.96 4.21 86.36 0.36 5.33 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 31 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.28 7.58 -2.38 -0.02 2.26 16 34 H 0.41 6.74 8.62 -92.71 -0.80 5.94 16 35 H 0.41 4.02 8.49 -92.71 -0.79 3.24 16 36 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 0.59 6.52 -2.39 -0.02 0.58 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.79 8.04 -2.39 -0.02 0.77 16 41 H 0.03 0.39 8.12 -2.39 -0.02 0.37 16 42 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.10 0.74 6.38 -2.39 -0.02 0.72 16 44 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 45 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 46 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.10 0.72 8.09 -2.38 -0.02 0.70 16 49 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 52 H 0.06 2.63 4.49 -2.39 -0.01 2.62 16 53 H 0.03 1.27 7.07 -2.39 -0.02 1.26 16 Total: -1.00 -75.56 404.47 -4.40 -79.95 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.78 Total: 16.09 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 7.24 Total: 20.69 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -10.85 Total: -134.31 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -1.68 Total: -30.33 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.90 kcal Total: -75.56 -4.40 -79.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339901.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.218 kcal (2) G-P(sol) polarization free energy of solvation -75.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds