Wall clock time and date at job start Sat Apr 11 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.46841 * 111.00009 * 299.21342 * 4 2 1 6 6 C 1.53040 * 109.52433 * 174.15732 * 5 4 2 7 7 C 1.53121 * 109.27699 * 59.17931 * 6 5 4 8 8 C 1.53007 * 109.52149 * 182.43884 * 7 6 5 9 9 C 1.52997 * 109.47355 * 294.68290 * 8 7 6 10 10 N 1.46501 * 109.47236 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00109 * 180.02562 * 10 9 8 12 12 O 1.21587 * 119.99747 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00333 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00404 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47119 * 179.97438 * 14 13 11 16 16 O 1.21298 * 120.00140 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00041 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00415 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99494 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00222 * 179.97438 * 18 17 15 21 21 N 1.31407 * 119.99985 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99956 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46787 * 59.99832 * 22 20 18 24 24 H 1.48497 * 109.46867 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47070 * 300.00125 * 22 20 18 26 26 C 1.53121 * 109.15988 * 302.34517 * 7 6 5 27 27 C 1.46850 * 111.00522 * 174.99713 * 4 2 1 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09001 * 109.46345 * 294.17005 * 5 4 2 36 36 H 1.09000 * 109.46432 * 54.14079 * 5 4 2 37 37 H 1.08997 * 109.50332 * 299.23389 * 6 5 4 38 38 H 1.08998 * 109.50497 * 179.11583 * 6 5 4 39 39 H 1.09001 * 109.57729 * 62.28139 * 7 6 5 40 40 H 1.08999 * 109.46648 * 54.68109 * 8 7 6 41 41 H 1.08997 * 109.46565 * 174.67784 * 8 7 6 42 42 H 1.08997 * 109.47070 * 300.00094 * 9 8 7 43 43 H 1.09001 * 109.47009 * 59.99996 * 9 8 7 44 44 H 0.96995 * 119.99757 * 359.97438 * 10 9 8 45 45 H 0.97000 * 119.99765 * 359.97438 * 13 11 10 46 46 H 1.08998 * 109.46885 * 300.00156 * 14 13 11 47 47 H 1.09002 * 109.46914 * 59.99769 * 14 13 11 48 48 H 0.97002 * 119.99596 * 359.97438 * 17 15 14 49 49 H 0.97000 * 119.99586 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.49895 * 297.71693 * 26 7 6 51 51 H 1.08996 * 109.53497 * 177.62117 * 26 7 6 52 52 H 1.08998 * 109.46273 * 305.86025 * 27 4 2 53 53 H 1.09004 * 109.45486 * 65.83539 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5644 -0.0159 2.4205 6 6 1.9682 -0.8420 3.6438 7 6 3.4907 -1.0032 3.6648 8 6 3.8958 -1.8794 4.8519 9 6 3.5546 -1.1586 6.1576 10 7 3.9419 -1.9978 7.2943 11 6 3.7344 -1.5645 8.5535 12 8 3.2262 -0.4768 8.7461 13 7 4.0912 -2.3362 9.5992 14 6 3.8652 -1.8655 10.9680 15 6 4.3480 -2.9074 11.9437 16 8 4.8328 -3.9418 11.5359 17 7 4.2411 -2.6900 13.2695 18 6 4.6798 -3.6381 14.1573 19 1 5.1115 -4.5591 13.7942 20 6 4.5701 -3.4136 15.5241 21 7 4.0463 -2.2924 15.9659 22 14 5.1686 -4.7052 16.7337 23 1 6.6192 -4.9447 16.5247 24 1 4.9400 -4.2277 18.1211 25 1 4.4218 -5.9703 16.5168 26 6 3.9438 -1.6664 2.3611 27 6 3.4828 -0.8165 1.1750 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.0229 0.9711 2.4813 36 1 0.4797 0.0887 2.3948 37 1 1.4988 -1.8243 3.5906 38 1 1.6438 -0.3317 4.5507 39 1 3.9604 -0.0240 3.7577 40 1 3.3552 -2.8248 4.8068 41 1 4.9680 -2.0716 4.8124 42 1 4.0951 -0.2132 6.2027 43 1 2.4824 -0.9664 6.1971 44 1 4.3470 -2.8656 7.1406 45 1 4.4970 -3.2038 9.4455 46 1 4.4123 -0.9364 11.1276 47 1 2.8001 -1.6908 11.1208 48 1 3.8537 -1.8626 13.5956 49 1 3.9694 -2.1359 16.9201 50 1 3.5056 -2.6617 2.2878 51 1 5.0309 -1.7458 2.3513 52 1 3.7914 -1.2933 0.2448 53 1 3.9323 0.1743 1.2419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868945681.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:52 Heat of formation + Delta-G solvation = -108.661831 kcal Electronic energy + Delta-G solvation = -28940.539357 eV Core-core repulsion = 24845.157918 eV Total energy + Delta-G solvation = -4095.381438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21831 -40.56375 -39.98965 -37.56273 -36.23406 -35.52435 -35.24811 -33.36808 -32.64236 -31.72860 -29.97523 -28.61763 -28.11277 -26.43486 -25.10810 -24.28273 -22.52058 -22.01616 -21.34963 -21.19900 -20.15232 -20.07341 -19.45457 -17.54228 -17.36231 -17.10647 -16.98100 -16.46649 -16.23657 -15.95812 -15.89886 -15.55923 -15.41572 -15.29602 -15.09829 -14.96529 -14.67746 -14.37156 -13.93976 -13.89533 -13.66517 -13.58475 -13.52559 -12.99583 -12.91567 -12.88498 -12.74103 -12.53830 -12.45776 -12.23819 -12.15505 -12.12770 -11.95428 -11.61198 -11.59653 -11.55024 -11.42161 -11.08475 -10.99236 -10.54381 -10.40814 -10.09072 -9.77941 -9.15895 -8.49666 -6.00052 1.39210 1.43414 1.53815 1.64831 1.91101 2.13298 2.29933 2.98927 3.06379 3.17574 3.35040 3.74032 3.83999 3.88456 3.97748 4.17599 4.21355 4.25580 4.30393 4.39566 4.41809 4.44554 4.47213 4.49739 4.52449 4.62978 4.70570 4.72875 4.78091 4.84872 4.93631 4.95134 5.00970 5.04277 5.09150 5.13322 5.21236 5.26191 5.31037 5.32573 5.36893 5.39684 5.40560 5.53805 5.57675 5.92591 5.98841 6.23482 6.25992 6.49361 7.04493 7.05630 7.44025 7.55279 7.95639 8.66972 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.039802 B = 0.001369 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.316496 B =20441.378528 C =20751.271926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 C -0.183 4.183 4 N -0.540 5.540 5 C 0.052 3.948 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.113 4.113 9 C 0.139 3.861 10 N -0.733 5.733 11 C 0.702 3.298 12 O -0.635 6.635 13 N -0.725 5.725 14 C 0.142 3.858 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.339 4.339 19 H 0.087 0.913 20 C -0.009 4.009 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.106 4.106 27 C 0.054 3.946 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.411 0.589 45 H 0.410 0.590 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.399 0.601 49 H 0.280 0.720 50 H 0.069 0.931 51 H 0.078 0.922 52 H 0.078 0.922 53 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 5.064 -32.501 33.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.242 4.242 4 N -0.265 5.265 5 C -0.076 4.076 6 C -0.152 4.152 7 C -0.098 4.098 8 C -0.151 4.151 9 C 0.015 3.985 10 N -0.389 5.389 11 C 0.402 3.598 12 O -0.517 6.517 13 N -0.382 5.382 14 C 0.013 3.987 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.469 4.469 19 H 0.105 0.895 20 C -0.210 4.210 21 N -0.556 5.556 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.144 4.144 27 C -0.074 4.074 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.247 0.753 45 H 0.248 0.752 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.233 0.767 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.096 0.904 52 H 0.097 0.903 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.784 4.974 -32.386 32.984 hybrid contribution 0.646 0.178 0.959 1.170 sum -3.138 5.152 -31.427 32.001 Atomic orbital electron populations 1.21860 0.94011 1.02194 1.02040 1.21737 0.96066 0.92516 0.93103 1.22440 1.01268 0.97994 1.02505 1.62205 1.11081 1.51214 1.01967 1.22125 1.00525 0.95248 0.89659 1.21701 0.95680 1.00866 0.96927 1.21071 0.95710 0.98936 0.94117 1.21749 1.02788 0.99216 0.91328 1.21327 0.99874 0.93467 0.83827 1.45003 1.67335 1.23339 1.03213 1.16001 0.79016 0.83438 0.81394 1.90877 1.52098 1.23183 1.85501 1.44693 1.66923 1.22745 1.03880 1.20570 1.02133 0.95661 0.80319 1.20410 0.84745 0.89117 0.83692 1.90465 1.51891 1.30294 1.78523 1.41825 1.53851 1.19396 1.04346 1.19719 1.39603 1.00123 0.87415 0.89516 1.26122 0.96522 0.99450 0.98925 1.69677 1.43985 1.25421 1.16490 0.84927 0.78782 0.77638 0.76625 1.19480 1.19648 1.19492 1.21590 1.00898 0.99316 0.92560 1.22108 0.87165 0.98735 0.99383 0.92819 0.92388 0.91302 0.89783 0.92936 0.92758 0.91324 0.95015 0.90515 0.91413 0.91700 0.91472 0.90328 0.89998 0.92821 0.92407 0.75333 0.75187 0.89150 0.89160 0.76709 0.91078 0.91258 0.90388 0.90329 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.99 71.98 0.65 -0.78 16 2 C 0.07 0.79 2.96 44.92 0.13 0.92 16 3 C -0.18 -1.82 8.50 71.98 0.61 -1.21 16 4 N -0.54 -6.86 4.64 -871.15 -4.04 -10.90 16 5 C 0.05 0.69 4.63 86.33 0.40 1.09 16 6 C -0.11 -1.55 5.08 30.65 0.16 -1.40 16 7 C -0.08 -0.95 2.25 -10.71 -0.02 -0.97 16 8 C -0.11 -1.40 4.80 30.60 0.15 -1.25 16 9 C 0.14 2.68 5.44 86.38 0.47 3.15 16 10 N -0.73 -16.66 5.56 -478.55 -2.66 -19.32 16 11 C 0.70 22.65 8.57 179.06 1.53 24.18 16 12 O -0.63 -25.11 16.34 -3.99 -0.07 -25.17 16 13 N -0.72 -24.21 5.53 -482.31 -2.67 -26.88 16 14 C 0.14 5.30 6.15 85.63 0.53 5.83 16 15 C 0.43 20.11 7.85 87.66 0.69 20.80 16 16 O -0.62 -32.15 15.24 -3.09 -0.05 -32.20 16 17 N -0.56 -28.19 5.29 -306.99 -1.62 -29.81 16 18 C -0.34 -18.72 9.68 84.04 0.81 -17.91 16 19 H 0.09 5.01 7.16 -2.91 -0.02 4.98 16 20 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 21 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 22 Si 1.00 41.69 29.55 68.60 2.03 43.71 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 C -0.11 -1.11 5.38 30.64 0.16 -0.94 16 27 C 0.05 0.60 5.02 86.32 0.43 1.03 16 28 H 0.05 0.57 6.30 -2.39 -0.02 0.56 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.05 0.60 6.52 -2.39 -0.02 0.58 16 33 H 0.05 0.56 6.65 -2.39 -0.02 0.54 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.03 0.44 6.62 -2.39 -0.02 0.43 16 36 H 0.08 1.02 6.03 -2.39 -0.01 1.01 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 0.97 6.71 -2.39 -0.02 0.95 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.24 6.64 -2.39 -0.02 1.23 16 44 H 0.41 7.10 8.49 -92.71 -0.79 6.31 16 45 H 0.41 13.19 7.45 -92.71 -0.69 12.50 16 46 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 48 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 49 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 53 H 0.03 0.38 6.73 -2.39 -0.02 0.37 16 Total: -1.00 -67.29 412.69 -2.91 -70.19 By element: Atomic # 1 Polarization: 47.57 SS G_CDS: -1.28 Total: 46.30 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 7.17 Total: 32.53 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -10.71 Total: -135.36 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -0.11 Total: -57.37 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -67.29 -2.91 -70.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868945681.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.470 kcal (2) G-P(sol) polarization free energy of solvation -67.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds