Wall clock time and date at job start Sat Apr 11 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34779 * 120.00059 * 2 1 4 4 O 1.21581 * 119.99744 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99626 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99526 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46960 * 184.50477 * 6 5 3 8 8 H 1.08998 * 109.58544 * 308.60700 * 7 6 5 9 9 C 1.53189 * 109.70212 * 188.24929 * 7 6 5 10 10 C 1.53040 * 109.31144 * 185.51060 * 9 7 6 11 11 C 1.53041 * 109.54201 * 61.36141 * 10 9 7 12 12 C 1.53623 * 109.24011 * 298.51567 * 11 10 9 13 13 N 1.46922 * 108.54502 * 54.85677 * 12 11 10 14 14 C 1.34776 * 120.63122 * 126.36952 * 13 12 11 15 15 O 1.21590 * 119.99488 * 185.78572 * 14 13 12 16 16 N 1.34775 * 120.00121 * 5.78149 * 14 13 12 17 17 C 1.46499 * 119.99692 * 185.15574 * 16 14 13 18 18 C 1.53000 * 109.47090 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.47139 * 59.99550 * 18 17 16 20 20 C 1.52997 * 109.47121 * 300.00253 * 18 17 16 21 21 C 1.50695 * 109.47463 * 179.97438 * 18 17 16 22 22 H 1.08000 * 119.99770 * 3.78681 * 21 18 17 23 23 C 1.37876 * 120.00144 * 183.79085 * 21 18 17 24 24 N 1.31513 * 119.99864 * 353.69830 * 23 21 18 25 25 Si 1.86800 * 120.00148 * 173.69818 * 23 21 18 26 26 H 1.48492 * 109.47218 * 59.99857 * 25 23 21 27 27 H 1.48501 * 109.46970 * 299.99950 * 25 23 21 28 28 H 1.48501 * 109.47279 * 180.02562 * 25 23 21 29 29 H 1.08994 * 109.47117 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46967 * 300.00113 * 1 2 3 31 31 H 1.09000 * 109.47034 * 60.00108 * 1 2 3 32 32 H 0.96998 * 119.99621 * 179.97438 * 2 1 3 33 33 H 0.97002 * 120.00538 * 0.02562 * 5 3 2 34 34 H 1.08993 * 109.46986 * 64.50793 * 6 5 3 35 35 H 1.09003 * 109.47127 * 304.50402 * 6 5 3 36 36 H 1.09003 * 109.49838 * 305.45509 * 9 7 6 37 37 H 1.08991 * 109.49914 * 65.55845 * 9 7 6 38 38 H 1.08996 * 109.46403 * 181.38555 * 10 9 7 39 39 H 1.09006 * 109.45725 * 301.35752 * 10 9 7 40 40 H 1.09002 * 109.49339 * 58.58576 * 11 10 9 41 41 H 1.09000 * 109.49772 * 178.68508 * 11 10 9 42 42 H 1.08997 * 109.74162 * 295.11047 * 12 11 10 43 43 H 1.09006 * 109.66177 * 174.54760 * 12 11 10 44 44 H 0.96996 * 120.00108 * 5.15581 * 16 14 13 45 45 H 1.09002 * 109.47307 * 60.00109 * 17 16 14 46 46 H 1.09004 * 109.47249 * 299.99690 * 17 16 14 47 47 H 1.08995 * 109.47216 * 174.58085 * 19 18 17 48 48 H 1.08996 * 109.47125 * 294.58940 * 19 18 17 49 49 H 1.09003 * 109.46539 * 54.58611 * 19 18 17 50 50 H 1.08999 * 109.47052 * 305.34510 * 20 18 17 51 51 H 1.08999 * 109.47539 * 65.34202 * 20 18 17 52 52 H 1.09002 * 109.47719 * 185.34880 * 20 18 17 53 53 H 0.96998 * 120.00472 * 4.67542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.7197 2.1584 -0.1126 8 1 6.0146 1.4315 0.6442 9 6 6.5022 3.4593 0.0923 10 6 7.9897 3.1998 -0.1575 11 6 8.1929 2.7361 -1.6018 12 6 7.4292 1.4218 -1.8237 13 7 6.0238 1.6290 -1.4490 14 6 5.0321 1.3337 -2.3127 15 8 3.8809 1.6069 -2.0328 16 7 5.3167 0.7356 -3.4865 17 6 4.2560 0.5169 -4.4731 18 6 4.8411 -0.1746 -5.7061 19 6 5.4439 -1.5205 -5.2982 20 6 5.9314 0.7083 -6.3167 21 6 3.7500 -0.4003 -6.7208 22 1 2.7536 -0.0281 -6.5339 23 6 4.0239 -1.0820 -7.8875 24 7 5.2605 -1.4267 -8.1729 25 14 2.6384 -1.5158 -9.0629 26 1 1.9713 -0.2714 -9.5227 27 1 1.6506 -2.3788 -8.3666 28 1 3.1917 -2.2429 -10.2336 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8401 0.0004 33 1 3.9717 0.3271 0.0005 34 1 4.0175 2.9722 0.9271 35 1 3.8970 3.0410 -0.8475 36 1 6.1423 4.2143 -0.6067 37 1 6.3610 3.8118 1.1139 38 1 8.5519 4.1182 0.0115 39 1 8.3430 2.4268 0.5249 40 1 7.8170 3.4980 -2.2847 41 1 9.2550 2.5740 -1.7858 42 1 7.8608 0.6360 -1.2037 43 1 7.4891 1.1356 -2.8738 44 1 6.2236 0.4501 -3.6781 45 1 3.8263 1.4756 -4.7634 46 1 3.4795 -0.1126 -4.0383 47 1 5.7742 -2.0555 -6.1885 48 1 6.2952 -1.3523 -4.6386 49 1 4.6916 -2.1124 -4.7769 50 1 5.5251 1.6991 -6.5199 51 1 6.7638 0.7932 -5.6181 52 1 6.2821 0.2616 -7.2471 53 1 5.9700 -1.2621 -7.5323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875661607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:57 Heat of formation + Delta-G solvation = -43.343176 kcal Electronic energy + Delta-G solvation = -32449.356308 eV Core-core repulsion = 28356.807299 eV Total energy + Delta-G solvation = -4092.549009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95059 -40.55343 -39.20612 -38.06285 -36.31526 -35.41938 -34.79951 -33.77354 -32.53813 -31.89976 -28.46008 -27.88225 -27.82921 -26.86136 -26.00244 -25.12424 -23.15139 -22.12921 -21.79328 -20.83936 -20.65281 -19.76062 -18.91405 -18.23584 -17.38315 -17.21485 -16.73732 -16.48056 -15.93388 -15.65705 -15.54322 -15.51161 -15.34605 -15.15889 -15.09019 -14.66616 -14.46800 -14.43826 -14.10824 -13.89509 -13.68167 -13.43850 -13.33344 -13.21457 -13.09666 -13.02894 -12.75655 -12.55770 -12.44253 -12.16309 -11.92469 -11.88959 -11.72182 -11.62323 -11.53993 -11.35090 -11.26700 -10.53421 -10.41799 -10.33338 -10.25592 -10.05043 -9.43889 -9.22408 -8.38620 -6.24273 1.55520 1.60466 1.67857 1.80467 1.92423 2.27548 2.44319 2.58842 3.01794 3.24479 3.47481 3.66140 3.85905 3.99054 4.12906 4.18632 4.22053 4.28273 4.35186 4.41481 4.46673 4.50550 4.62627 4.65959 4.66900 4.80150 4.82095 4.86433 4.87276 4.90409 4.96740 4.97657 5.05814 5.07652 5.16654 5.19418 5.21050 5.25127 5.48406 5.54207 5.59187 5.64304 5.67494 5.76902 5.82927 5.98950 6.08211 6.17202 6.32252 6.75153 7.08329 7.21999 7.50615 7.72367 7.77024 8.89163 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009664 B = 0.003895 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.782481 B = 7186.685460 C = 9591.857770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.748 5.748 3 C 0.704 3.296 4 O -0.652 6.652 5 N -0.697 5.697 6 C 0.156 3.844 7 C 0.160 3.840 8 H 0.102 0.898 9 C -0.125 4.125 10 C -0.110 4.110 11 C -0.133 4.133 12 C 0.106 3.894 13 N -0.625 5.625 14 C 0.685 3.315 15 O -0.597 6.597 16 N -0.731 5.731 17 C 0.186 3.814 18 C 0.036 3.964 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.604 4.604 22 H 0.032 0.968 23 C -0.012 4.012 24 N -0.936 5.936 25 Si 1.101 2.899 26 H -0.281 1.281 27 H -0.277 1.277 28 H -0.282 1.282 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.407 0.593 33 H 0.396 0.604 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.399 0.601 45 H 0.021 0.979 46 H 0.031 0.969 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.029 0.971 50 H 0.023 0.977 51 H 0.048 0.952 52 H 0.047 0.953 53 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 2.372 20.649 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.404 5.404 3 C 0.403 3.597 4 O -0.535 6.535 5 N -0.349 5.349 6 C 0.032 3.968 7 C 0.056 3.944 8 H 0.120 0.880 9 C -0.164 4.164 10 C -0.147 4.147 11 C -0.171 4.171 12 C -0.016 4.016 13 N -0.364 5.364 14 C 0.386 3.614 15 O -0.476 6.476 16 N -0.389 5.389 17 C 0.062 3.938 18 C 0.035 3.965 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.642 4.642 22 H 0.050 0.950 23 C -0.212 4.212 24 N -0.577 5.577 25 Si 0.925 3.075 26 H -0.207 1.207 27 H -0.203 1.203 28 H -0.208 1.208 29 H 0.128 0.872 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.242 0.758 33 H 0.230 0.770 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.089 0.911 44 H 0.237 0.763 45 H 0.040 0.960 46 H 0.050 0.950 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.048 0.952 50 H 0.042 0.958 51 H 0.066 0.934 52 H 0.066 0.934 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.844 2.859 19.371 20.743 hybrid contribution 0.645 0.036 0.666 0.928 sum 7.489 2.895 20.037 21.586 Atomic orbital electron populations 1.21413 0.77935 1.03587 1.00605 1.44803 1.08076 1.06924 1.80565 1.16056 0.82530 0.83969 0.77110 1.90804 1.69188 1.32518 1.61006 1.44600 1.03556 1.09337 1.77400 1.21178 0.89658 0.86007 0.99956 1.21445 0.92879 0.97098 0.82963 0.88037 1.21908 0.96084 0.95248 1.03165 1.21468 0.94520 1.02706 0.96027 1.21989 1.01110 0.96181 0.97827 1.21952 0.79682 0.98996 1.00959 1.47333 1.05580 1.68578 1.14939 1.16304 0.85002 0.79390 0.80681 1.91099 1.20630 1.60031 1.75865 1.45417 1.12895 1.63981 1.16621 1.20764 0.88522 0.97059 0.87502 1.18520 0.94175 0.92306 0.91460 1.21825 0.98614 0.98420 0.99824 1.21872 0.97845 0.98345 1.00677 1.22042 0.96299 1.39484 1.06381 0.94991 1.26674 1.01842 0.93560 0.99112 1.70939 1.00764 1.47814 1.38226 0.83121 0.72883 0.76817 0.74694 1.20744 1.20269 1.20773 0.87177 0.92951 0.95132 0.75808 0.77029 0.92349 0.93285 0.93176 0.88497 0.90355 0.89786 0.93387 0.88634 0.88818 0.91096 0.76270 0.96045 0.95033 0.93288 0.93249 0.95170 0.95763 0.93359 0.93378 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.59 10.70 127.77 1.37 3.96 16 2 N -0.75 -20.05 5.72 -500.19 -2.86 -22.91 16 3 C 0.70 24.40 7.73 179.05 1.38 25.79 16 4 O -0.65 -28.95 16.34 -3.97 -0.06 -29.01 16 5 N -0.70 -19.69 3.27 -478.53 -1.57 -21.26 16 6 C 0.16 4.24 4.30 86.38 0.37 4.61 16 7 C 0.16 2.91 2.92 44.98 0.13 3.04 16 8 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 9 C -0.13 -1.78 5.37 30.67 0.16 -1.61 16 10 C -0.11 -1.10 5.88 30.62 0.18 -0.92 16 11 C -0.13 -1.69 6.10 30.82 0.19 -1.51 16 12 C 0.11 1.66 6.37 86.51 0.55 2.21 16 13 N -0.63 -13.67 2.97 -812.04 -2.41 -16.08 16 14 C 0.68 21.86 7.84 179.05 1.40 23.27 16 15 O -0.60 -23.54 9.77 -4.00 -0.04 -23.58 16 16 N -0.73 -24.34 4.88 -478.53 -2.34 -26.68 16 17 C 0.19 8.03 4.51 86.38 0.39 8.42 16 18 C 0.04 1.66 0.50 -52.93 -0.03 1.64 16 19 C -0.13 -5.47 7.88 71.98 0.57 -4.91 16 20 C -0.13 -5.63 7.94 71.98 0.57 -5.06 16 21 C -0.60 -32.79 8.01 25.60 0.20 -32.58 16 22 H 0.03 1.81 7.75 -2.91 -0.02 1.79 16 23 C -0.01 -0.64 5.10 84.65 0.43 -0.21 16 24 N -0.94 -52.55 12.20 21.45 0.26 -52.29 16 25 Si 1.10 49.70 29.91 68.60 2.05 51.75 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.41 8.31 8.84 -92.71 -0.82 7.49 16 33 H 0.40 9.30 8.27 -92.71 -0.77 8.53 16 34 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 35 H 0.05 1.82 6.33 -2.39 -0.02 1.81 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.24 5.76 -2.38 -0.01 1.23 16 44 H 0.40 11.52 3.85 -92.71 -0.36 11.16 16 45 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.05 2.33 5.16 -2.39 -0.01 2.31 16 48 H 0.05 1.70 7.02 -2.39 -0.02 1.69 16 49 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.05 1.71 7.02 -2.39 -0.02 1.69 16 52 H 0.05 2.32 5.29 -2.39 -0.01 2.31 16 53 H 0.28 15.12 3.50 -92.71 -0.32 14.80 16 Total: -1.00 -77.12 396.59 0.35 -76.77 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -0.57 Total: 37.15 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 7.88 Total: 26.13 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -8.91 Total: -139.22 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.10 Total: -52.59 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.75 kcal Total: -77.12 0.35 -76.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875661607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.427 kcal (2) G-P(sol) polarization free energy of solvation -77.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds