Wall clock time and date at job start Sat Apr 11 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47353 * 2 1 4 4 N 1.46906 * 109.46990 * 120.00170 * 2 1 3 5 5 C 1.46901 * 110.99861 * 154.99719 * 4 2 1 6 6 C 1.52995 * 109.47286 * 180.02562 * 5 4 2 7 7 C 1.52990 * 109.47292 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99891 * 180.02562 * 8 7 6 10 10 O 1.21349 * 120.00280 * 359.97438 * 9 8 7 11 11 C 1.49457 * 119.99707 * 179.97438 * 9 8 7 12 12 O 1.21348 * 119.99849 * 353.51129 * 11 9 8 13 13 N 1.34768 * 120.00031 * 173.79261 * 11 9 8 14 14 C 1.47084 * 120.88232 * 180.83197 * 13 11 9 15 15 C 1.53699 * 108.27661 * 128.75318 * 14 13 11 16 16 N 1.46904 * 109.26040 * 54.08126 * 15 14 13 17 17 C 1.46891 * 111.00218 * 172.60792 * 16 15 14 18 18 C 1.50708 * 109.46997 * 294.30399 * 17 16 15 19 19 H 1.07996 * 120.00122 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99837 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00036 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99925 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47352 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46787 * 120.00193 * 22 20 18 25 25 H 1.48500 * 109.47509 * 240.00105 * 22 20 18 26 26 C 1.46896 * 111.26775 * 296.75960 * 16 15 14 27 27 C 1.47086 * 120.88250 * 1.10796 * 13 11 9 28 28 H 1.09006 * 109.46779 * 299.99836 * 1 2 3 29 29 H 1.08998 * 109.47239 * 59.99196 * 1 2 3 30 30 H 1.08991 * 109.47412 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46700 * 239.99915 * 2 1 3 32 32 H 1.09001 * 109.46587 * 60.00189 * 3 2 1 33 33 H 1.09000 * 109.47040 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47050 * 300.00143 * 3 2 1 35 35 H 1.00901 * 110.99491 * 31.04403 * 4 2 1 36 36 H 1.08997 * 109.46985 * 59.99384 * 5 4 2 37 37 H 1.09007 * 109.46699 * 300.00244 * 5 4 2 38 38 H 1.09006 * 109.47070 * 59.99674 * 6 5 4 39 39 H 1.09000 * 109.47150 * 300.00387 * 6 5 4 40 40 H 1.08997 * 109.47382 * 59.99645 * 7 6 5 41 41 H 1.09008 * 109.47224 * 299.99987 * 7 6 5 42 42 H 0.97000 * 119.99435 * 359.97438 * 8 7 6 43 43 H 1.08992 * 109.62696 * 248.51735 * 14 13 11 44 44 H 1.08999 * 109.62866 * 9.10511 * 14 13 11 45 45 H 1.09003 * 109.64530 * 294.08090 * 15 14 13 46 46 H 1.08997 * 109.42269 * 173.94875 * 15 14 13 47 47 H 1.08997 * 109.47187 * 54.30054 * 17 16 15 48 48 H 1.08995 * 109.47175 * 174.30436 * 17 16 15 49 49 H 0.96992 * 120.00172 * 179.97438 * 21 20 18 50 50 H 1.09003 * 109.49570 * 303.13917 * 26 16 15 51 51 H 1.09002 * 109.49595 * 183.06212 * 26 16 15 52 52 H 1.08997 * 109.62790 * 350.89766 * 27 13 11 53 53 H 1.08996 * 109.62728 * 111.47792 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 3.3670 -1.2356 0.9807 6 6 3.8417 -1.9484 2.2485 7 6 5.2446 -2.5145 2.0204 8 7 5.6989 -3.1976 3.2342 9 6 6.9153 -3.7769 3.2662 10 8 7.6341 -3.7332 2.2894 11 6 7.3790 -4.4733 4.5046 12 8 6.7133 -4.4169 5.5177 13 7 8.5392 -5.1590 4.4979 14 6 9.0049 -5.8665 5.7003 15 6 9.3461 -7.3126 5.3069 16 7 10.2973 -7.2987 4.1876 17 6 10.7847 -8.6530 3.8940 18 6 11.5973 -9.1578 5.0585 19 1 11.7372 -8.5351 5.9297 20 6 12.1612 -10.4152 5.0121 21 7 11.9903 -11.1738 3.9514 22 14 13.1689 -11.0407 6.4552 23 1 13.2104 -10.0031 7.5167 24 1 12.5463 -12.2760 6.9952 25 1 14.5507 -11.3405 6.0012 26 6 9.7056 -6.6817 2.9930 27 6 9.3762 -5.2148 3.2897 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.3792 -1.4182 1.4847 36 1 4.0523 -0.4221 0.7424 37 1 3.3429 -1.9445 0.1530 38 1 3.1562 -2.7619 2.4862 39 1 3.8655 -1.2398 3.0764 40 1 5.9303 -1.7013 1.7824 41 1 5.2203 -3.2232 1.1925 42 1 5.1245 -3.2321 4.0150 43 1 9.8924 -5.3723 6.0952 44 1 8.2168 -5.8668 6.4533 45 1 8.4377 -7.8345 5.0057 46 1 9.7943 -7.8239 6.1588 47 1 9.9361 -9.3166 3.7283 48 1 11.4074 -8.6291 2.9997 49 1 12.3873 -12.0581 3.9186 50 1 8.7922 -7.2124 2.7240 51 1 10.4145 -6.7353 2.1668 52 1 8.8337 -4.7839 2.4483 53 1 10.2987 -4.6590 3.4575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884690558.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:05 Heat of formation + Delta-G solvation = -76.006153 kcal Electronic energy + Delta-G solvation = -29304.484843 eV Core-core repulsion = 25210.519461 eV Total energy + Delta-G solvation = -4093.965382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.07138 -40.07786 -39.01557 -38.56038 -36.89923 -35.87052 -34.40557 -33.77883 -32.18221 -30.65975 -30.17007 -28.14184 -27.68261 -26.48534 -25.02789 -24.19778 -23.42794 -22.61010 -21.88666 -21.41865 -20.62259 -18.81386 -18.40663 -18.19086 -17.44190 -17.12514 -16.94794 -16.62620 -16.41067 -16.09428 -16.05349 -15.68918 -15.57942 -15.36217 -15.29738 -15.09343 -14.87933 -14.33271 -14.11444 -13.77409 -13.65718 -13.46810 -13.32343 -13.15713 -12.95266 -12.83414 -12.75206 -12.59593 -12.54497 -12.36302 -12.31745 -12.23154 -12.07356 -12.03760 -11.93110 -11.75830 -11.61738 -11.33683 -10.63790 -10.39382 -10.20208 -9.92803 -9.38869 -9.08915 -8.21039 -6.31266 0.25273 1.19648 1.42101 1.42942 1.56391 2.03634 2.34278 2.41452 3.10483 3.11378 3.21346 3.26488 3.92604 3.93580 4.01364 4.03928 4.07768 4.08660 4.19844 4.27298 4.30458 4.39935 4.45629 4.51508 4.52890 4.63429 4.72279 4.73625 4.81224 4.82562 4.90063 4.95582 4.98322 4.99151 5.00604 5.09684 5.13987 5.17389 5.22511 5.26244 5.31145 5.41447 5.41908 5.63330 5.91207 6.02084 6.10645 6.14102 6.27045 6.48830 6.55158 6.61430 6.84120 6.85776 7.38707 8.90435 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.032658 B = 0.001548 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.163990 B =18086.765008 C =18374.178218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.075 3.925 3 C -0.140 4.140 4 N -0.694 5.694 5 C 0.065 3.935 6 C -0.119 4.119 7 C 0.118 3.882 8 N -0.683 5.683 9 C 0.514 3.486 10 O -0.523 6.523 11 C 0.502 3.498 12 O -0.547 6.547 13 N -0.577 5.577 14 C 0.121 3.879 15 C 0.056 3.944 16 N -0.540 5.540 17 C 0.207 3.793 18 C -0.523 4.523 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.041 3.959 27 C 0.073 3.927 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.346 0.654 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.420 0.580 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.013 0.987 46 H 0.086 0.914 47 H -0.040 1.040 48 H 0.008 0.992 49 H 0.264 0.736 50 H 0.016 0.984 51 H 0.084 0.916 52 H 0.160 0.840 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.779 23.846 -6.550 32.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.035 4.035 3 C -0.198 4.198 4 N -0.327 5.327 5 C -0.065 4.065 6 C -0.157 4.157 7 C -0.005 4.005 8 N -0.336 5.336 9 C 0.295 3.705 10 O -0.402 6.402 11 C 0.285 3.715 12 O -0.426 6.426 13 N -0.310 5.310 14 C -0.001 4.001 15 C -0.073 4.073 16 N -0.265 5.265 17 C 0.081 3.919 18 C -0.561 4.561 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.576 5.576 22 Si 0.795 3.205 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.088 4.088 27 C -0.048 4.048 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.165 0.835 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.258 0.742 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.032 0.968 46 H 0.104 0.896 47 H -0.023 1.023 48 H 0.026 0.974 49 H 0.073 0.927 50 H 0.035 0.965 51 H 0.103 0.897 52 H 0.176 0.824 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.980 24.627 -6.361 32.972 hybrid contribution -0.280 -2.298 -0.045 2.316 sum -21.260 22.329 -6.406 31.490 Atomic orbital electron populations 1.21948 0.93829 1.02316 1.02844 1.21554 0.95501 0.95455 0.90948 1.21796 1.00735 0.95399 1.01850 1.60507 1.03791 1.33487 1.34880 1.21828 0.91046 0.97851 0.95798 1.21645 0.93928 1.00736 0.99374 1.21562 0.96359 0.96818 0.85774 1.45766 1.15909 1.53359 1.18522 1.19948 0.83111 0.79994 0.87415 1.90353 1.53858 1.59069 1.36918 1.20249 0.81618 0.80636 0.88977 1.90721 1.55493 1.62100 1.34320 1.48235 1.20080 1.47888 1.14759 1.21990 1.00659 0.90787 0.86686 1.22377 0.93278 0.95728 0.95960 1.62050 1.36215 1.22194 1.06067 1.19397 0.92782 0.83356 0.96380 1.21495 1.31567 1.00135 1.02883 0.91443 1.25920 0.97718 0.96966 0.99023 1.70096 1.46307 1.10604 1.30565 0.85313 0.78006 0.78181 0.78988 1.18453 1.20610 1.20525 1.22508 0.97406 0.95155 0.93696 1.23318 0.96557 0.95766 0.89110 0.92009 0.91257 0.92305 0.94014 0.92601 0.93328 0.91785 0.83466 0.90823 0.94572 0.90245 0.89943 0.90525 0.90805 0.74183 0.89309 0.88133 0.96838 0.89555 1.02274 0.97357 0.92716 0.96546 0.89741 0.82397 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.18 71.98 0.66 -0.38 16 2 C 0.07 0.66 3.22 44.92 0.14 0.81 16 3 C -0.14 -1.30 9.42 71.98 0.68 -0.63 16 4 N -0.69 -6.46 6.31 -491.55 -3.10 -9.56 16 5 C 0.06 0.57 5.48 86.30 0.47 1.04 16 6 C -0.12 -0.99 5.59 30.59 0.17 -0.82 16 7 C 0.12 1.46 5.67 86.37 0.49 1.95 16 8 N -0.68 -11.52 5.55 -464.41 -2.58 -14.09 16 9 C 0.51 12.35 7.81 87.27 0.68 13.04 16 10 O -0.52 -14.07 13.03 -3.24 -0.04 -14.11 16 11 C 0.50 14.35 7.77 87.27 0.68 15.02 16 12 O -0.55 -16.93 15.95 -3.24 -0.05 -16.98 16 13 N -0.58 -17.76 3.00 -818.61 -2.46 -20.21 16 14 C 0.12 3.84 6.63 86.50 0.57 4.41 16 15 C 0.06 2.17 5.47 86.54 0.47 2.64 16 16 N -0.54 -23.47 4.62 -898.87 -4.15 -27.63 16 17 C 0.21 11.09 4.72 85.56 0.40 11.49 16 18 C -0.52 -29.35 8.41 25.60 0.22 -29.14 16 19 H 0.07 3.68 7.13 -2.91 -0.02 3.65 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.94 -56.30 13.29 21.45 0.28 -56.01 16 22 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 C 0.04 1.52 5.62 86.39 0.49 2.00 16 27 C 0.07 2.24 6.35 86.35 0.55 2.79 16 28 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.35 8.12 -2.39 -0.02 0.33 16 31 H 0.04 0.39 7.80 -2.39 -0.02 0.37 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.50 7.45 -2.39 -0.02 0.48 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.35 2.61 8.35 -89.69 -0.75 1.87 16 36 H 0.07 0.71 7.43 -2.39 -0.02 0.69 16 37 H 0.04 0.31 8.06 -2.38 -0.02 0.29 16 38 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.42 6.12 7.96 -92.71 -0.74 5.38 16 43 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.10 3.01 7.07 -2.39 -0.02 2.99 16 45 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.09 3.57 6.67 -2.39 -0.02 3.55 16 47 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 48 H 0.01 0.48 7.97 -2.39 -0.02 0.46 16 49 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 50 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.08 3.04 7.99 -2.39 -0.02 3.02 16 52 H 0.16 4.61 3.93 -74.90 -0.29 4.31 16 53 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -67.59 419.46 -3.80 -71.39 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -0.87 Total: 16.35 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 7.14 Total: 24.80 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -12.00 Total: -127.51 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.09 Total: -31.09 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.59 -3.80 -71.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884690558.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.613 kcal (2) G-P(sol) polarization free energy of solvation -67.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds