Wall clock time and date at job start Sat Apr 11 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47708 * 2 1 4 4 C 1.53002 * 109.46724 * 120.00045 * 2 1 3 5 5 H 1.09004 * 109.47302 * 54.56066 * 4 2 1 6 6 F 1.39891 * 109.47322 * 294.55436 * 4 2 1 7 7 C 1.50699 * 109.47122 * 174.55323 * 4 2 1 8 8 O 1.21280 * 119.99796 * 100.32424 * 7 4 2 9 9 N 1.34779 * 120.00419 * 280.32537 * 7 4 2 10 10 C 1.46921 * 120.62775 * 354.99237 * 9 7 4 11 11 C 1.52756 * 109.01047 * 233.58338 * 10 9 7 12 12 C 1.53040 * 109.38655 * 305.58848 * 11 10 9 13 13 C 1.52996 * 109.45234 * 181.24918 * 12 11 10 14 14 H 1.08998 * 109.50102 * 300.01038 * 13 12 11 15 15 C 1.53039 * 109.49359 * 60.10163 * 13 12 11 16 16 C 1.53042 * 109.53768 * 181.31330 * 15 13 12 17 17 C 1.53190 * 109.31382 * 298.63977 * 16 15 13 18 18 N 1.46925 * 108.77604 * 54.63270 * 17 16 15 19 19 C 1.36937 * 120.63132 * 126.37022 * 18 17 16 20 20 H 1.08000 * 120.00433 * 213.35331 * 19 18 17 21 21 C 1.38816 * 120.00019 * 33.34977 * 19 18 17 22 22 N 1.31626 * 119.99947 * 7.69266 * 21 19 18 23 23 Si 1.86795 * 119.99960 * 187.69544 * 21 19 18 24 24 H 1.48509 * 109.47239 * 90.00116 * 23 21 19 25 25 H 1.48498 * 109.47207 * 209.99689 * 23 21 19 26 26 H 1.48494 * 109.47445 * 330.00202 * 23 21 19 27 27 C 1.46922 * 118.73714 * 306.39364 * 18 17 16 28 28 C 1.53050 * 109.53199 * 61.23648 * 12 11 10 29 29 C 1.46926 * 120.63395 * 175.27474 * 9 7 4 30 30 H 1.08997 * 109.46911 * 300.00352 * 1 2 3 31 31 H 1.09000 * 109.46488 * 59.99573 * 1 2 3 32 32 H 1.08995 * 109.47479 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46911 * 239.99648 * 2 1 3 34 34 H 1.09000 * 109.47433 * 185.01775 * 3 2 1 35 35 H 1.08998 * 109.47218 * 305.02617 * 3 2 1 36 36 H 1.09008 * 109.47200 * 65.02186 * 3 2 1 37 37 H 1.09004 * 109.59035 * 353.42484 * 10 9 7 38 38 H 1.09007 * 109.58283 * 113.84376 * 10 9 7 39 39 H 1.09007 * 109.56522 * 185.55190 * 11 10 9 40 40 H 1.09004 * 109.38867 * 65.52143 * 11 10 9 41 41 H 1.08999 * 109.46128 * 301.22369 * 12 11 10 42 42 H 1.08994 * 109.46665 * 301.33736 * 15 13 12 43 43 H 1.09001 * 109.46302 * 61.29643 * 15 13 12 44 44 H 1.08996 * 109.50151 * 178.68488 * 16 15 13 45 45 H 1.09006 * 109.52238 * 58.61011 * 16 15 13 46 46 H 1.08996 * 109.58439 * 294.84444 * 17 16 15 47 47 H 1.09002 * 109.58525 * 174.42429 * 17 16 15 48 48 H 0.96997 * 119.99633 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.58512 * 293.81478 * 27 18 17 50 50 H 1.09006 * 109.70222 * 173.47107 * 27 18 17 51 51 H 1.09002 * 109.49367 * 178.68334 * 28 12 11 52 52 H 1.09007 * 109.49479 * 58.59027 * 28 12 11 53 53 H 1.09000 * 109.58752 * 246.15852 * 29 9 7 54 54 H 1.09007 * 109.58396 * 6.44042 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5992 -1.7170 1.2993 6 9 1.6786 0.0064 2.3881 7 6 3.5409 -0.8392 1.1838 8 8 4.2375 -0.0684 1.8094 9 7 4.1091 -1.8012 0.4300 10 6 3.2812 -2.8094 -0.2457 11 6 3.7818 -4.2013 0.1357 12 6 5.2771 -4.3057 -0.1734 13 6 5.7734 -5.7093 0.1790 14 1 5.6075 -5.8983 1.2396 15 6 5.0098 -6.7442 -0.6504 16 6 5.4825 -8.1506 -0.2751 17 6 6.9756 -8.2844 -0.5906 18 7 7.7012 -7.2025 0.0889 19 6 8.7593 -7.4817 0.9121 20 1 8.9467 -6.8650 1.7787 21 6 9.5911 -8.5574 0.6328 22 7 9.4576 -9.2160 -0.4990 23 14 10.8997 -9.0703 1.8632 24 1 10.3319 -10.0722 2.8009 25 1 12.0521 -9.6660 1.1406 26 1 11.3552 -7.8806 2.6262 27 6 7.2697 -5.8154 -0.1313 28 6 6.0439 -3.2711 0.6536 29 6 5.5686 -1.8654 0.2734 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1264 1.4436 -0.0899 35 1 1.6052 1.9816 -0.8415 36 1 1.7521 1.9296 0.9316 37 1 2.2426 -2.6980 0.0659 38 1 3.3566 -2.6801 -1.3255 39 1 3.2388 -4.9539 -0.4361 40 1 3.6181 -4.3655 1.2007 41 1 5.4426 -4.1175 -1.2342 42 1 3.9423 -6.6544 -0.4499 43 1 5.1960 -6.5694 -1.7101 44 1 4.9218 -8.8882 -0.8493 45 1 5.3191 -8.3178 0.7896 46 1 7.1298 -8.2081 -1.6669 47 1 7.3393 -9.2483 -0.2346 48 1 10.0391 -9.9674 -0.6943 49 1 7.4481 -5.5378 -1.1702 50 1 7.8275 -5.1483 0.5260 51 1 7.1110 -3.3616 0.4505 52 1 5.8590 -3.4434 1.7139 53 1 5.8344 -1.6575 -0.7630 54 1 6.0387 -1.1295 0.9259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961394699.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:21 Heat of formation + Delta-G solvation = -106.976635 kcal Electronic energy + Delta-G solvation = -31453.406423 eV Core-core repulsion = 27338.178099 eV Total energy + Delta-G solvation = -4115.228324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.227 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.91506 -41.39161 -39.83359 -38.03507 -36.60404 -35.51370 -33.88443 -32.59256 -31.93657 -30.79164 -28.78356 -28.13604 -27.23347 -25.96296 -24.63193 -23.28012 -23.06206 -21.93213 -21.16256 -20.57882 -20.11722 -18.81206 -18.50444 -17.78045 -17.21623 -16.89379 -16.33247 -16.18681 -15.75974 -15.56406 -15.49251 -15.15639 -14.90169 -14.80585 -14.70576 -14.51418 -14.16717 -14.04654 -14.01532 -13.92713 -13.62384 -13.42231 -13.15617 -13.03137 -12.98744 -12.93860 -12.79170 -12.43814 -12.25528 -12.21605 -12.11247 -11.99948 -11.89122 -11.78192 -11.74585 -11.59296 -11.45644 -11.33592 -10.97992 -10.76663 -10.62676 -10.54631 -9.72113 -8.56440 -7.86634 -5.40215 1.34504 1.43917 1.44132 1.53483 1.78055 2.48362 3.16441 3.27871 3.38855 3.57680 3.65988 3.69840 3.79600 3.87379 3.96072 4.12530 4.17501 4.23940 4.30207 4.35112 4.37945 4.46510 4.49400 4.56460 4.58375 4.64291 4.76165 4.78710 4.81380 4.88009 4.91357 4.92434 4.98929 4.99415 5.02610 5.09221 5.11626 5.15396 5.18055 5.24471 5.30306 5.37796 5.40238 5.42540 5.44976 5.54677 5.59332 5.63920 5.72040 5.85191 6.25522 6.42998 6.95702 7.17437 7.88537 8.40579 9.17680 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.022830 B = 0.002341 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.173947 B =11958.992452 C =12624.751200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.152 4.152 4 C 0.078 3.922 5 H 0.140 0.860 6 F -0.204 7.204 7 C 0.488 3.512 8 O -0.578 6.578 9 N -0.598 5.598 10 C 0.099 3.901 11 C -0.128 4.128 12 C -0.070 4.070 13 C -0.085 4.085 14 H 0.048 0.952 15 C -0.096 4.096 16 C -0.135 4.135 17 C 0.176 3.824 18 N -0.613 5.613 19 C -0.262 4.262 20 H 0.058 0.942 21 C -0.048 4.048 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.271 1.271 27 C 0.151 3.849 28 C -0.125 4.125 29 C 0.115 3.885 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.043 0.957 46 H -0.006 1.006 47 H 0.046 0.954 48 H 0.250 0.750 49 H 0.011 0.989 50 H 0.044 0.956 51 H 0.070 0.930 52 H 0.048 0.952 53 H 0.088 0.912 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.048 15.597 -4.125 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.209 4.209 4 C 0.039 3.961 5 H 0.157 0.843 6 F -0.185 7.185 7 C 0.275 3.725 8 O -0.457 6.457 9 N -0.331 5.331 10 C -0.022 4.022 11 C -0.166 4.166 12 C -0.089 4.089 13 C -0.105 4.105 14 H 0.067 0.933 15 C -0.133 4.133 16 C -0.174 4.174 17 C 0.050 3.950 18 N -0.337 5.337 19 C -0.393 4.393 20 H 0.076 0.924 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.196 1.196 27 C 0.026 3.974 28 C -0.164 4.164 29 C -0.007 4.007 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.012 0.988 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.029 0.971 50 H 0.062 0.938 51 H 0.089 0.911 52 H 0.067 0.933 53 H 0.106 0.894 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.577 15.892 -3.830 27.070 hybrid contribution 1.704 -0.604 0.967 2.050 sum -19.873 15.288 -2.863 25.236 Atomic orbital electron populations 1.21852 0.91625 1.03792 1.03029 1.21728 0.98796 0.96822 0.95539 1.21824 1.00223 0.96122 1.02720 1.21952 0.90820 0.98342 0.84991 0.84290 1.92820 1.91961 1.80410 1.53280 1.21494 0.91721 0.80629 0.78643 1.90717 1.65156 1.44607 1.45259 1.48233 1.07789 1.28608 1.48470 1.22157 0.95125 0.86143 0.98816 1.21959 0.95115 0.97137 1.02374 1.21058 0.95272 0.92431 1.00097 1.21482 0.95178 0.94818 0.98996 0.93319 1.21455 0.99669 0.93036 0.99119 1.22052 0.96924 0.98266 1.00156 1.20599 0.89362 0.92167 0.92861 1.44265 1.34090 1.01407 1.53893 1.19433 1.03815 1.12893 1.03147 0.92422 1.25947 0.99785 1.00685 0.97967 1.70130 1.40996 1.22823 1.24115 0.85292 0.78757 0.78158 0.78386 1.21105 1.21839 1.19574 1.21102 0.94096 0.85445 0.96781 1.21928 1.00585 0.94063 0.99793 1.21592 0.79543 0.97222 1.02348 0.93043 0.90303 0.90170 0.86767 0.94463 0.89934 0.93349 0.87066 0.88174 0.87790 0.92356 0.89959 0.89595 0.92444 0.91457 0.93853 0.98799 0.93553 0.94114 0.97146 0.93771 0.91114 0.93302 0.89372 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.11 71.98 0.66 -0.36 16 2 C -0.11 -1.18 2.64 -10.80 -0.03 -1.20 16 3 C -0.15 -2.29 8.83 71.98 0.64 -1.66 16 4 C 0.08 1.23 2.56 29.85 0.08 1.30 16 5 H 0.14 1.22 6.34 -2.38 -0.02 1.21 16 6 F -0.20 -4.69 15.64 44.97 0.70 -3.99 16 7 C 0.49 11.00 6.09 87.66 0.53 11.54 16 8 O -0.58 -19.01 16.03 -3.03 -0.05 -19.06 16 9 N -0.60 -10.76 2.98 -819.75 -2.44 -13.20 16 10 C 0.10 1.00 5.68 86.22 0.49 1.49 16 11 C -0.13 -1.82 5.03 30.53 0.15 -1.67 16 12 C -0.07 -1.46 1.74 -10.76 -0.02 -1.48 16 13 C -0.08 -2.53 1.92 -10.72 -0.02 -2.55 16 14 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 15 C -0.10 -2.65 4.86 30.62 0.15 -2.50 16 16 C -0.13 -4.84 6.08 30.67 0.19 -4.65 16 17 C 0.18 8.49 5.23 86.36 0.45 8.94 16 18 N -0.61 -31.00 2.98 -699.11 -2.08 -33.09 16 19 C -0.26 -14.72 9.57 84.03 0.80 -13.92 16 20 H 0.06 3.20 7.84 -2.91 -0.02 3.18 16 21 C -0.05 -2.75 5.10 84.86 0.43 -2.31 16 22 N -0.93 -55.86 11.03 21.65 0.24 -55.62 16 23 Si 0.97 45.66 29.56 68.60 2.03 47.69 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 C 0.15 6.07 5.27 86.36 0.46 6.53 16 28 C -0.13 -2.95 5.05 30.67 0.15 -2.80 16 29 C 0.12 2.42 6.44 86.36 0.56 2.98 16 30 H 0.05 0.51 7.95 -2.39 -0.02 0.49 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.11 0.75 7.56 -2.39 -0.02 0.73 16 34 H 0.04 0.72 7.47 -2.39 -0.02 0.70 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.89 7.52 -2.38 -0.02 0.87 16 37 H 0.11 0.50 5.42 -2.38 -0.01 0.49 16 38 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.10 1.12 6.33 -2.38 -0.02 1.11 16 40 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.76 6.33 -2.39 -0.02 1.75 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 46 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.05 2.57 6.16 -2.39 -0.01 2.56 16 48 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 49 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 50 H 0.04 1.81 6.51 -2.38 -0.02 1.79 16 51 H 0.07 1.84 6.49 -2.39 -0.02 1.83 16 52 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 53 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 54 H 0.07 1.78 7.00 -2.38 -0.02 1.76 16 Total: -1.00 -75.16 401.98 4.93 -70.23 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.86 Total: 9.38 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.67 Total: -2.33 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.29 Total: -101.91 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.70 Total: -3.99 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -75.16 4.93 -70.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961394699.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.748 kcal (2) G-P(sol) polarization free energy of solvation -75.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds