Wall clock time and date at job start Sat Apr 11 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47190 * 2 1 4 4 H 1.08996 * 109.46937 * 52.35090 * 3 2 1 5 5 C 1.50693 * 109.46884 * 172.35328 * 3 2 1 6 6 O 1.21284 * 120.00181 * 107.73226 * 5 3 2 7 7 N 1.34775 * 120.00195 * 287.72117 * 5 3 2 8 8 C 1.47741 * 121.65621 * 182.10099 * 7 5 3 9 9 C 1.53597 * 108.48219 * 87.79969 * 8 7 5 10 10 C 1.50711 * 109.49659 * 55.02256 * 9 8 7 11 11 O 1.21277 * 120.24030 * 65.67760 * 10 9 8 12 12 N 1.35514 * 119.51801 * 245.66400 * 10 9 8 13 13 C 1.47107 * 118.10371 * 179.91801 * 12 10 9 14 14 C 1.52993 * 109.17700 * 259.43311 * 13 12 10 15 15 N 1.47765 * 108.81998 * 57.75119 * 14 13 12 16 16 C 1.36944 * 121.64734 * 83.02719 * 15 14 13 17 17 H 1.07996 * 119.99643 * 320.94585 * 16 15 14 18 18 C 1.38811 * 119.99515 * 140.93948 * 16 15 14 19 19 N 1.31611 * 120.00596 * 353.69458 * 18 16 15 20 20 Si 1.86806 * 119.99703 * 173.69065 * 18 16 15 21 21 H 1.48502 * 109.46799 * 90.00120 * 20 18 16 22 22 H 1.48492 * 109.47266 * 210.00432 * 20 18 16 23 23 H 1.48500 * 109.47074 * 330.00303 * 20 18 16 24 24 C 1.47746 * 116.70667 * 263.01201 * 15 14 13 25 25 C 1.47770 * 121.65260 * 2.38290 * 7 5 3 26 26 N 1.46897 * 109.46685 * 292.35259 * 3 2 1 27 27 C 1.46908 * 111.00286 * 318.41639 * 26 3 2 28 28 C 1.46897 * 111.00396 * 82.37069 * 26 3 2 29 29 H 1.09002 * 109.47539 * 322.04733 * 1 2 3 30 30 H 1.08997 * 109.46845 * 82.04342 * 1 2 3 31 31 H 1.09002 * 109.47248 * 202.04711 * 1 2 3 32 32 H 1.08991 * 109.47593 * 239.99560 * 2 1 3 33 33 H 1.09006 * 109.46796 * 119.99145 * 2 1 3 34 34 H 1.09001 * 109.58793 * 207.43580 * 8 7 5 35 35 H 1.09001 * 109.58567 * 327.84218 * 8 7 5 36 36 H 1.08998 * 109.50144 * 294.98820 * 9 8 7 37 37 H 1.09005 * 109.40852 * 174.99450 * 9 8 7 38 38 H 0.96994 * 120.94894 * 359.93602 * 12 10 9 39 39 H 1.09008 * 109.52077 * 139.52485 * 13 12 10 40 40 H 1.09002 * 109.57119 * 19.37587 * 13 12 10 41 41 H 1.08997 * 109.57373 * 297.95095 * 14 13 12 42 42 H 1.08998 * 109.68676 * 177.61559 * 14 13 12 43 43 H 0.97005 * 120.00441 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.57789 * 14.87484 * 24 15 14 45 45 H 1.08998 * 109.57633 * 254.47361 * 24 15 14 46 46 H 1.09001 * 109.58811 * 69.83509 * 25 7 5 47 47 H 1.09001 * 109.58984 * 190.26193 * 25 7 5 48 48 H 1.08996 * 109.46792 * 59.99857 * 27 26 3 49 49 H 1.08988 * 109.47412 * 180.02562 * 27 26 3 50 50 H 1.09007 * 109.46746 * 300.00471 * 27 26 3 51 51 H 1.09004 * 109.46604 * 43.65296 * 28 26 3 52 52 H 1.08994 * 109.47445 * 163.65675 * 28 26 3 53 53 H 1.09002 * 109.47105 * 283.66121 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5693 1.9943 0.8136 5 6 3.5350 1.4467 0.1891 6 8 4.2631 1.7236 -0.7406 7 7 4.0631 1.1429 1.3912 8 6 5.5207 1.1802 1.6296 9 6 5.9087 2.6050 2.0523 10 6 5.0822 3.0192 3.2425 11 8 5.2131 2.4496 4.3051 12 7 4.1918 4.0330 3.1168 13 6 3.4001 4.4105 4.2978 14 6 2.0028 3.7980 4.1828 15 7 2.1340 2.3316 4.0565 16 6 2.2894 1.5269 5.1536 17 1 2.9108 1.8493 5.9760 18 6 1.6480 0.2971 5.2086 19 7 0.7942 -0.0426 4.2664 20 14 1.9970 -0.8759 6.6199 21 1 1.0475 -0.6104 7.7304 22 1 1.8329 -2.2757 6.1523 23 1 3.3880 -0.6740 7.0991 24 6 2.0890 1.7764 2.6880 25 6 3.2134 0.7502 2.5346 26 7 1.7066 2.0797 -1.2809 27 6 1.9358 1.1589 -2.4024 28 6 0.3229 2.5729 -1.2793 29 1 -0.3634 0.8103 0.6320 30 1 -0.3633 0.1422 -1.0178 31 1 -0.3634 -0.9525 0.3858 32 1 1.8934 -0.5138 -0.8898 33 1 1.8933 -0.5137 0.8901 34 1 5.7791 0.4799 2.4239 35 1 6.0476 0.9086 0.7149 36 1 5.7259 3.2921 1.2262 37 1 6.9656 2.6288 2.3180 38 1 4.0795 4.4964 2.2721 39 1 3.3186 5.4963 4.3499 40 1 3.8880 4.0382 5.1986 41 1 1.5005 4.1971 3.3017 42 1 1.4225 4.0373 5.0739 43 1 0.3463 -0.9022 4.3047 44 1 2.2258 2.5792 1.9635 45 1 1.1269 1.2918 2.5220 46 1 2.7858 -0.2355 2.3506 47 1 3.8131 0.7264 3.4445 48 1 1.3115 0.2739 -2.2793 49 1 1.6816 1.6559 -3.3385 50 1 2.9850 0.8636 -2.4215 51 1 0.1155 3.0697 -0.3314 52 1 0.1884 3.2804 -2.0974 53 1 -0.3618 1.7346 -1.4075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070999878.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:52 Heat of formation + Delta-G solvation = -0.500454 kcal Electronic energy + Delta-G solvation = -34776.994414 eV Core-core repulsion = 30686.303205 eV Total energy + Delta-G solvation = -4090.691209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.33985 -38.97189 -37.25213 -36.15443 -35.13343 -33.63910 -32.32510 -31.41521 -30.55630 -29.15702 -28.01082 -27.46316 -26.51556 -24.52467 -23.70737 -22.68439 -22.48347 -20.60326 -20.12264 -19.76653 -18.52288 -17.15201 -16.59816 -16.31406 -15.90323 -15.46201 -15.36937 -14.89814 -14.66676 -14.64785 -14.34800 -13.85843 -13.67348 -13.44126 -13.26596 -13.13721 -12.85587 -12.64007 -12.42703 -12.31786 -12.23002 -12.03481 -11.73222 -11.62760 -11.53640 -11.40839 -11.25049 -11.15392 -11.09103 -10.94981 -10.84226 -10.59303 -10.52503 -10.17329 -10.07905 -9.91517 -9.66396 -9.19666 -9.05200 -8.68554 -8.34574 -8.13132 -7.93167 -6.48975 -5.71957 -3.35495 3.10583 3.26455 3.36430 3.43818 3.44493 3.50075 3.90823 4.29483 4.48394 4.88681 5.11644 5.20546 5.24238 5.30134 5.38215 5.41941 5.46424 5.49291 5.52478 5.59495 5.64066 5.77097 5.80754 5.85261 5.93034 5.98636 6.02187 6.03511 6.05877 6.09973 6.16998 6.19063 6.21873 6.26684 6.29554 6.40761 6.50401 6.59266 6.63159 6.78357 6.83802 7.16109 7.18389 7.26189 7.29147 7.45552 7.89846 8.02627 8.13965 8.47112 8.71449 8.95786 9.19703 9.76683 10.44272 11.26105 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.006124 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.679153 B = 4570.808375 C = 5711.508003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.154 4.154 3 C 0.045 3.955 4 H 0.133 0.867 5 C 0.530 3.470 6 O -0.546 6.546 7 N -0.617 5.617 8 C 0.129 3.871 9 C -0.156 4.156 10 C 0.522 3.478 11 O -0.521 6.521 12 N -0.724 5.724 13 C 0.088 3.912 14 C 0.127 3.873 15 N -0.581 5.581 16 C -0.229 4.229 17 H 0.061 0.939 18 C 0.012 3.988 19 N -0.899 5.899 20 Si 0.894 3.106 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.147 3.853 25 C 0.097 3.903 26 N -0.521 5.521 27 C 0.020 3.980 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.392 0.608 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.251 0.749 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.030 0.970 49 H 0.059 0.941 50 H 0.077 0.923 51 H 0.065 0.935 52 H 0.063 0.937 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 4.734 -9.476 10.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.193 4.193 3 C -0.066 4.066 4 H 0.150 0.850 5 C 0.318 3.682 6 O -0.424 6.424 7 N -0.351 5.351 8 C 0.005 3.995 9 C -0.198 4.198 10 C 0.307 3.693 11 O -0.396 6.396 12 N -0.376 5.376 13 C -0.039 4.039 14 C -0.001 4.001 15 N -0.304 5.304 16 C -0.359 4.359 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.543 5.543 20 Si 0.724 3.276 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.203 1.203 24 C 0.022 3.978 25 C -0.025 4.025 26 N -0.244 5.244 27 C -0.128 4.128 28 C -0.133 4.133 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.225 0.775 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.127 0.873 48 H 0.048 0.952 49 H 0.078 0.922 50 H 0.096 0.904 51 H 0.084 0.916 52 H 0.082 0.918 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.407 4.702 -9.262 10.662 hybrid contribution -0.478 -1.251 0.476 1.421 sum 1.929 3.451 -8.785 9.634 Atomic orbital electron populations 1.21920 0.94908 1.02814 1.00608 1.22160 0.97114 0.96507 1.03481 1.22529 0.93335 0.96280 0.94416 0.85033 1.20326 0.90302 0.75990 0.81593 1.90586 1.62164 1.49042 1.40611 1.49024 1.07001 1.67413 1.11672 1.21604 0.81681 0.94791 1.01427 1.22215 1.00607 0.99424 0.97505 1.20376 0.80023 0.79445 0.89411 1.90723 1.67275 1.52390 1.29193 1.46067 1.40896 1.36770 1.13843 1.22279 0.95102 0.96929 0.89554 1.21495 0.93055 0.86453 0.99063 1.44259 1.84992 0.99696 1.01466 1.18854 1.21568 0.98878 0.96621 0.92129 1.25300 0.96233 0.99770 0.97371 1.69882 1.28776 1.21836 1.33790 0.86423 0.78262 0.80269 0.82693 1.21446 1.21833 1.20313 1.21845 0.97405 0.92838 0.85675 1.22785 0.93810 0.98334 0.87548 1.61845 1.22806 1.37858 1.01930 1.22520 1.02456 0.94546 0.93248 1.22688 0.88461 0.99732 1.02386 0.91785 0.93260 0.92454 0.91574 0.89767 0.89751 0.89918 0.90379 0.88584 0.77511 0.92924 0.89635 0.94451 0.92801 0.93866 0.95178 0.91379 0.92181 0.87349 0.95192 0.92194 0.90433 0.91569 0.91825 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.32 37.16 0.31 -1.74 16 2 C -0.15 -2.37 4.54 -26.73 -0.12 -2.49 16 3 C 0.05 0.73 1.31 -68.87 -0.09 0.64 16 4 H 0.13 2.27 3.11 -51.93 -0.16 2.11 16 5 C 0.53 9.34 6.42 -10.99 -0.07 9.27 16 6 O -0.55 -10.57 14.67 5.55 0.08 -10.49 16 7 N -0.62 -10.76 2.42 -171.29 -0.41 -11.17 16 8 C 0.13 2.03 5.75 -3.05 -0.02 2.01 16 9 C -0.16 -2.29 6.20 -27.57 -0.17 -2.46 16 10 C 0.52 9.18 4.75 -10.65 -0.05 9.13 16 11 O -0.52 -11.31 15.08 5.56 0.08 -11.23 16 12 N -0.72 -11.39 4.70 -59.68 -0.28 -11.67 16 13 C 0.09 1.44 6.57 -3.71 -0.02 1.42 16 14 C 0.13 2.36 6.09 -3.35 -0.02 2.33 16 15 N -0.58 -12.76 2.22 -171.21 -0.38 -13.14 16 16 C -0.23 -5.77 8.08 -15.06 -0.12 -5.90 16 17 H 0.06 1.64 7.84 -52.49 -0.41 1.23 16 18 C 0.01 0.32 4.85 -17.43 -0.08 0.23 16 19 N -0.90 -23.18 10.99 55.49 0.61 -22.57 16 20 Si 0.89 21.13 29.56 -169.99 -5.02 16.10 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.15 2.99 2.61 -3.36 -0.01 2.98 16 25 C 0.10 1.95 3.64 -3.34 -0.01 1.93 16 26 N -0.52 -7.72 4.58 -244.59 -1.12 -8.84 16 27 C 0.02 0.28 8.26 60.07 0.50 0.77 16 28 C 0.02 0.19 8.71 60.06 0.52 0.71 16 29 H 0.06 0.97 7.50 -51.93 -0.39 0.58 16 30 H 0.05 0.61 5.36 -51.93 -0.28 0.33 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.98 5.86 -51.93 -0.30 0.67 16 33 H 0.08 1.47 5.43 -51.93 -0.28 1.19 16 34 H 0.08 1.36 7.81 -51.93 -0.41 0.95 16 35 H 0.08 1.23 7.61 -51.93 -0.40 0.83 16 36 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.39 5.38 8.71 -40.82 -0.36 5.02 16 39 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.09 1.66 7.01 -51.93 -0.36 1.30 16 41 H 0.04 0.64 7.76 -51.93 -0.40 0.24 16 42 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 43 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.03 0.58 4.85 -51.93 -0.25 0.33 16 45 H 0.07 1.56 6.14 -51.93 -0.32 1.24 16 46 H 0.06 1.29 6.11 -51.93 -0.32 0.97 16 47 H 0.11 2.53 4.81 -51.93 -0.25 2.28 16 48 H 0.03 0.38 5.17 -51.93 -0.27 0.11 16 49 H 0.06 0.72 8.14 -51.94 -0.42 0.30 16 50 H 0.08 1.20 6.60 -51.92 -0.34 0.86 16 51 H 0.07 0.83 7.65 -51.93 -0.40 0.44 16 52 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 53 H 0.04 0.46 4.97 -51.93 -0.26 0.20 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -29.02 377.00 -8.46 -37.48 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -8.24 Total: 11.00 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 0.54 Total: 18.85 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -1.58 Total: -67.39 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.17 Total: -21.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.02 -8.46 -37.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070999878.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.983 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds