Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 119.99934 * 2 1 4 4 O 1.21591 * 120.00146 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99963 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99753 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47148 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47598 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99302 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00187 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00002 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47161 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.69952 * 299.31236 * 12 11 10 14 14 C 1.52757 * 109.50726 * 179.19298 * 12 11 10 15 15 C 1.53042 * 109.38216 * 185.70762 * 14 12 11 16 16 C 1.53038 * 109.53901 * 61.23851 * 15 14 12 17 17 C 1.53001 * 109.50154 * 178.68295 * 16 15 14 18 18 C 1.53004 * 109.52444 * 58.60569 * 16 15 14 19 19 C 1.53187 * 109.31521 * 298.63658 * 16 15 14 20 20 N 1.46923 * 109.58514 * 59.66713 * 12 11 10 21 21 C 1.36945 * 120.63417 * 353.41495 * 20 12 11 22 22 H 1.08004 * 119.99143 * 30.96028 * 21 20 12 23 23 C 1.38804 * 120.00073 * 210.95649 * 21 20 12 24 24 N 1.31618 * 120.00327 * 21.01119 * 23 21 20 25 25 Si 1.86809 * 119.99939 * 201.00638 * 23 21 20 26 26 H 1.48503 * 109.46840 * 270.00287 * 25 23 21 27 27 H 1.48497 * 109.46819 * 30.00103 * 25 23 21 28 28 H 1.48497 * 109.47085 * 150.00458 * 25 23 21 29 29 H 1.09002 * 109.46814 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47286 * 299.99683 * 1 2 3 31 31 H 1.09002 * 109.47188 * 59.99974 * 1 2 3 32 32 H 0.96997 * 120.00501 * 180.02562 * 2 1 3 33 33 H 0.96993 * 120.00050 * 359.97438 * 5 3 2 34 34 H 1.08993 * 109.47870 * 59.98886 * 6 5 3 35 35 H 1.09000 * 109.46719 * 299.98995 * 6 5 3 36 36 H 1.09009 * 109.47121 * 59.99225 * 7 6 5 37 37 H 1.09001 * 109.47193 * 299.99675 * 7 6 5 38 38 H 0.97002 * 120.00221 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.46932 * 60.00023 * 11 10 8 40 40 H 1.09000 * 109.46980 * 299.99990 * 11 10 8 41 41 H 1.08996 * 109.56522 * 65.67052 * 14 12 11 42 42 H 1.09006 * 109.36085 * 305.61625 * 14 12 11 43 43 H 1.08998 * 109.46104 * 301.21726 * 15 14 12 44 44 H 1.09000 * 109.45823 * 181.25908 * 15 14 12 45 45 H 1.08998 * 109.47757 * 179.83988 * 17 16 15 46 46 H 1.08999 * 109.47023 * 299.84404 * 17 16 15 47 47 H 1.08998 * 109.46757 * 59.83756 * 17 16 15 48 48 H 1.09002 * 109.46900 * 300.14715 * 18 16 15 49 49 H 1.08996 * 109.47092 * 60.14501 * 18 16 15 50 50 H 1.08998 * 109.47593 * 180.14905 * 18 16 15 51 51 H 1.08996 * 109.58681 * 294.84959 * 19 16 15 52 52 H 1.08999 * 109.70973 * 174.48860 * 19 16 15 53 53 H 0.97002 * 120.00122 * 4.98040 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7233 2.1565 -0.0001 8 6 6.4769 3.4616 -0.0001 9 8 5.8703 4.5119 -0.0005 10 7 7.8246 3.4616 0.0003 11 6 8.5571 4.7303 0.0008 12 6 10.0613 4.4508 0.0005 13 1 10.3309 3.8893 0.8951 14 6 10.8259 5.7731 -0.0192 15 6 12.3234 5.4918 -0.1630 16 6 12.5827 4.7622 -1.4830 17 6 14.0835 4.5105 -1.6413 18 6 12.0831 5.6193 -2.6478 19 6 11.8377 3.4236 -1.4769 20 7 10.4177 3.6740 -1.1946 21 6 9.4452 3.1973 -2.0326 22 1 8.5208 3.7429 -2.1525 23 6 9.6475 2.0130 -2.7277 24 7 10.5414 1.1451 -2.3033 25 14 8.6508 1.6508 -4.2657 26 1 7.4081 0.9290 -3.8916 27 1 8.2986 2.9266 -4.9391 28 1 9.4535 0.8089 -5.1888 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.9716 0.3272 -0.0005 34 1 3.9560 3.0071 0.8903 35 1 3.9555 3.0080 -0.8896 36 1 5.9867 1.5852 -0.8903 37 1 5.9867 1.5846 0.8897 38 1 8.3096 2.6215 0.0010 39 1 8.2935 5.3016 0.8908 40 1 8.2940 5.3021 -0.8891 41 1 10.6448 6.3133 0.9100 42 1 10.4861 6.3744 -0.8625 43 1 12.6574 4.8698 0.6674 44 1 12.8722 6.4336 -0.1547 45 1 14.2675 3.9883 -2.5802 46 1 14.6132 5.4632 -1.6456 47 1 14.4392 3.9009 -0.8107 48 1 11.0141 5.7993 -2.5340 49 1 12.6134 6.5715 -2.6518 50 1 12.2657 5.0978 -3.5873 51 1 12.2551 2.7767 -0.7053 52 1 11.9375 2.9429 -2.4501 53 1 11.0071 1.2986 -1.4664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099055373.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -81.424311 kcal Electronic energy + Delta-G solvation = -31222.258189 eV Core-core repulsion = 27128.057859 eV Total energy + Delta-G solvation = -4094.200331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.17781 -40.81557 -40.03301 -36.82870 -36.26720 -35.56673 -35.22789 -33.77479 -31.96000 -31.51415 -28.99769 -28.11061 -27.48659 -27.24346 -25.33665 -24.04475 -23.55778 -22.07427 -21.84260 -21.14604 -19.72650 -19.44625 -18.89186 -17.92759 -17.32024 -17.06443 -16.87632 -16.72185 -16.12630 -15.97071 -15.55507 -15.44430 -15.37919 -15.16046 -14.95577 -14.76674 -14.67570 -14.29319 -13.97510 -13.79495 -13.62230 -13.45866 -13.08347 -13.02491 -12.90603 -12.80730 -12.67129 -12.52702 -12.43714 -12.32515 -12.21928 -11.97851 -11.75607 -11.62232 -11.52931 -11.36028 -11.09025 -10.92249 -10.71709 -10.46301 -10.38713 -9.85137 -9.78696 -8.72231 -8.01965 -5.25839 1.56983 1.62766 1.64795 1.74559 1.80315 2.10148 2.48954 2.66044 3.33186 3.38897 3.53305 3.71555 3.92492 3.95299 4.04180 4.07597 4.10923 4.25036 4.35919 4.46005 4.46531 4.51786 4.59358 4.66541 4.72784 4.77902 4.83207 4.86564 4.88320 4.89343 4.98305 4.98349 5.01910 5.06663 5.09506 5.15848 5.25767 5.29845 5.38603 5.43526 5.48053 5.48571 5.58199 5.66137 5.73989 5.98113 6.08248 6.56323 6.74322 7.08561 7.18012 7.36884 7.55214 7.90536 8.37609 9.19498 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.002727 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.907998 B =10266.020964 C =11398.435610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.736 5.736 3 C 0.693 3.307 4 O -0.642 6.642 5 N -0.731 5.731 6 C 0.167 3.833 7 C -0.138 4.138 8 C 0.507 3.493 9 O -0.598 6.598 10 N -0.690 5.690 11 C 0.143 3.857 12 C 0.163 3.837 13 H 0.032 0.968 14 C -0.127 4.127 15 C -0.090 4.090 16 C -0.087 4.087 17 C -0.130 4.130 18 C -0.118 4.118 19 C 0.175 3.825 20 N -0.602 5.602 21 C -0.318 4.318 22 H 0.048 0.952 23 C -0.056 4.056 24 N -0.945 5.945 25 Si 1.088 2.912 26 H -0.278 1.278 27 H -0.296 1.296 28 H -0.297 1.297 29 H 0.116 0.884 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.416 0.584 33 H 0.415 0.585 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.412 0.588 39 H 0.068 0.932 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.060 0.940 50 H 0.029 0.971 51 H 0.002 0.998 52 H 0.039 0.961 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 -2.972 6.940 8.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.393 5.393 3 C 0.392 3.608 4 O -0.524 6.524 5 N -0.388 5.388 6 C 0.041 3.959 7 C -0.178 4.178 8 C 0.294 3.706 9 O -0.480 6.480 10 N -0.339 5.339 11 C 0.018 3.982 12 C 0.057 3.943 13 H 0.050 0.950 14 C -0.166 4.166 15 C -0.128 4.128 16 C -0.089 4.089 17 C -0.188 4.188 18 C -0.175 4.175 19 C 0.049 3.951 20 N -0.327 5.327 21 C -0.449 4.449 22 H 0.065 0.935 23 C -0.254 4.254 24 N -0.588 5.588 25 Si 0.917 3.083 26 H -0.204 1.204 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.253 0.747 33 H 0.253 0.747 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.249 0.751 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.048 0.952 51 H 0.020 0.980 52 H 0.058 0.942 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.816 -2.384 5.692 8.480 hybrid contribution 0.866 -0.001 0.778 1.165 sum -4.950 -2.386 6.470 8.489 Atomic orbital electron populations 1.21549 0.77260 1.04190 1.01121 1.44821 1.08341 1.06628 1.79472 1.16253 0.82122 0.84651 0.77763 1.90912 1.68981 1.32586 1.59922 1.44862 1.04260 1.10066 1.79631 1.20553 0.89173 0.84548 1.01596 1.21684 0.93313 0.95663 1.07187 1.20772 0.82736 0.91355 0.75711 1.90666 1.69027 1.35201 1.53145 1.45972 1.05531 1.10538 1.71871 1.21164 0.91244 0.85848 0.99936 1.20743 0.91458 0.92688 0.89366 0.95028 1.21891 0.96001 0.96892 1.01824 1.21381 0.95433 0.99981 0.95974 1.21067 0.95395 0.96540 0.95888 1.21731 0.94302 1.01732 1.01033 1.21621 1.00696 0.98558 0.96635 1.20816 0.83580 0.93278 0.97427 1.44227 1.01319 1.62697 1.24469 1.19918 0.99045 1.03841 1.22069 0.93461 1.26362 1.01726 0.91907 1.05440 1.70836 1.29266 1.35383 1.23279 0.83162 0.75179 0.75069 0.74863 1.20411 1.22317 1.22408 0.86535 0.93497 0.93781 0.74716 0.74749 0.92513 0.93651 0.87105 0.85233 0.75066 0.91408 0.94293 0.90311 0.92503 0.92473 0.90788 0.93922 0.91193 0.92768 0.93714 0.92105 0.95161 0.97959 0.94231 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.47 10.70 127.77 1.37 2.84 16 2 N -0.74 -12.37 5.72 -500.19 -2.86 -15.23 16 3 C 0.69 18.53 8.57 179.05 1.53 20.06 16 4 O -0.64 -24.20 16.34 -4.00 -0.07 -24.27 16 5 N -0.73 -16.45 5.56 -478.53 -2.66 -19.11 16 6 C 0.17 4.81 4.96 86.38 0.43 5.24 16 7 C -0.14 -3.59 5.81 29.85 0.17 -3.41 16 8 C 0.51 17.87 7.83 87.66 0.69 18.56 16 9 O -0.60 -25.46 15.98 -3.05 -0.05 -25.51 16 10 N -0.69 -24.53 3.81 -463.06 -1.77 -26.29 16 11 C 0.14 5.15 4.43 86.38 0.38 5.53 16 12 C 0.16 5.78 3.00 44.83 0.13 5.91 16 13 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 14 C -0.13 -3.78 5.00 30.53 0.15 -3.63 16 15 C -0.09 -2.53 4.71 30.62 0.14 -2.38 16 16 C -0.09 -2.85 0.77 -52.10 -0.04 -2.89 16 17 C -0.13 -3.63 8.48 71.98 0.61 -3.02 16 18 C -0.12 -3.96 7.99 71.98 0.58 -3.39 16 19 C 0.17 7.27 3.33 86.36 0.29 7.56 16 20 N -0.60 -25.42 2.26 -676.04 -1.53 -26.95 16 21 C -0.32 -15.13 6.86 84.03 0.58 -14.55 16 22 H 0.05 2.39 5.89 -2.91 -0.02 2.37 16 23 C -0.06 -2.82 4.77 84.86 0.41 -2.41 16 24 N -0.94 -50.85 12.50 21.65 0.27 -50.58 16 25 Si 1.09 48.06 29.97 68.60 2.06 50.12 16 26 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.30 -13.11 7.11 99.48 0.71 -12.41 16 28 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.42 3.78 8.84 -92.71 -0.82 2.96 16 33 H 0.42 6.03 8.49 -92.71 -0.79 5.24 16 34 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 36 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 37 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.41 15.01 7.35 -92.71 -0.68 14.33 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 1.62 7.45 -2.39 -0.02 1.60 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.06 1.83 6.34 -2.38 -0.02 1.82 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.04 1.69 5.97 -2.39 -0.01 1.68 16 49 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.00 0.11 7.78 -2.39 -0.02 0.09 16 52 H 0.04 1.95 6.43 -2.39 -0.02 1.93 16 53 H 0.26 14.13 6.45 -92.71 -0.60 13.53 16 Total: -1.00 -71.50 410.01 -0.38 -71.88 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -1.19 Total: 35.92 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 7.42 Total: 30.02 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -8.54 Total: -138.15 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.11 Total: -49.77 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.06 Total: 50.12 kcal Total: -71.50 -0.38 -71.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099055373.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.549 kcal (2) G-P(sol) polarization free energy of solvation -71.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds