Wall clock time and date at job start Sat Apr 11 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 C 1.53000 * 109.46662 * 239.99910 * 2 1 3 5 5 N 1.46499 * 109.47170 * 60.00337 * 4 2 1 6 6 C 1.36932 * 120.00350 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99868 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00619 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99828 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00512 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47104 * 59.99414 * 10 8 6 12 12 H 1.48500 * 109.47186 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46733 * 299.99880 * 10 8 6 14 14 C 1.53001 * 109.46981 * 120.00339 * 2 1 3 15 15 C 1.53043 * 109.44748 * 179.97438 * 14 2 1 16 16 C 1.53191 * 109.31132 * 181.37889 * 15 14 2 17 17 N 1.46921 * 108.77411 * 305.35957 * 16 15 14 18 18 C 1.34777 * 120.63225 * 233.58641 * 17 16 15 19 19 O 1.21282 * 119.99945 * 180.02562 * 18 17 16 20 20 C 1.50700 * 119.99997 * 0.02846 * 18 17 16 21 21 C 1.52995 * 109.46979 * 179.97438 * 20 18 17 22 22 N 1.46500 * 109.46935 * 179.97438 * 21 20 18 23 23 C 1.34777 * 119.99953 * 180.02562 * 22 21 20 24 24 N 1.34778 * 119.99933 * 180.02562 * 23 22 21 25 25 O 1.21583 * 120.00173 * 359.97438 * 23 22 21 26 26 C 1.46925 * 118.73795 * 53.61317 * 17 16 15 27 27 C 1.53046 * 109.46008 * 300.02190 * 14 2 1 28 28 H 1.09005 * 109.47243 * 300.00067 * 1 2 3 29 29 H 1.09000 * 109.47231 * 59.99938 * 1 2 3 30 30 H 1.09002 * 109.47199 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47302 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47089 * 300.00149 * 3 2 1 33 33 H 1.09005 * 109.47083 * 60.00395 * 3 2 1 34 34 H 1.09008 * 109.46946 * 179.97438 * 4 2 1 35 35 H 1.08992 * 109.47337 * 299.99946 * 4 2 1 36 36 H 0.97007 * 120.00299 * 359.97438 * 5 4 2 37 37 H 0.96993 * 120.00331 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.46300 * 59.99714 * 14 2 1 39 39 H 1.09004 * 109.49679 * 301.32867 * 15 14 2 40 40 H 1.08994 * 109.49744 * 61.42383 * 15 14 2 41 41 H 1.09002 * 109.58035 * 185.57574 * 16 15 14 42 42 H 1.09002 * 109.58818 * 65.15445 * 16 15 14 43 43 H 1.08997 * 109.46971 * 299.99626 * 20 18 17 44 44 H 1.08999 * 109.47199 * 59.99382 * 20 18 17 45 45 H 1.08997 * 109.47190 * 299.99769 * 21 20 18 46 46 H 1.08999 * 109.47434 * 59.99802 * 21 20 18 47 47 H 0.97003 * 120.00112 * 359.97438 * 22 21 20 48 48 H 0.96993 * 120.00091 * 359.97438 * 24 23 22 49 49 H 0.97004 * 119.99883 * 180.02562 * 24 23 22 50 50 H 1.09003 * 109.59222 * 186.59958 * 26 17 16 51 51 H 1.09006 * 109.70276 * 66.24587 * 26 17 16 52 52 H 1.08996 * 109.49923 * 298.58843 * 27 14 2 53 53 H 1.09001 * 109.49381 * 58.67936 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.5516 -0.0306 -2.4454 6 6 1.8827 -0.4981 -3.6891 7 1 2.5042 -1.3758 -3.7883 8 6 1.4205 0.1565 -4.8225 9 7 0.6634 1.2265 -4.7018 10 14 1.8716 -0.4817 -6.5192 11 1 1.3677 -1.8697 -6.6760 12 1 1.2570 0.3876 -7.5546 13 1 3.3483 -0.4705 -6.6756 14 6 2.0400 -0.7213 1.2492 15 6 3.5704 -0.7216 1.2484 16 6 4.0776 -1.4743 2.4824 17 7 3.4750 -0.8766 3.6817 18 6 4.2484 -0.4576 4.7028 19 8 3.7388 0.0337 5.6876 20 6 5.7465 -0.5997 4.6209 21 6 6.3815 -0.0509 5.9001 22 7 7.8377 -0.1896 5.8208 23 6 8.6112 0.2293 6.8420 24 7 9.9509 0.1022 6.7687 25 8 8.1004 0.7226 7.8289 26 6 2.0131 -0.7447 3.7469 27 6 1.5292 -0.0001 2.4987 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 3.1300 -0.7209 -1.2495 35 1 1.6766 -1.7489 -1.2493 36 1 0.9936 0.7579 -2.3564 37 1 0.3401 1.6837 -5.4937 38 1 1.6765 -1.7490 1.2490 39 1 3.9336 -1.2147 0.3467 40 1 3.9344 0.3055 1.2736 41 1 5.1630 -1.3928 2.5395 42 1 3.7910 -2.5238 2.4137 43 1 6.0060 -1.6524 4.5087 44 1 6.1181 -0.0404 3.7623 45 1 6.1219 1.0018 6.0119 46 1 6.0099 -0.6099 6.7590 47 1 8.2452 -0.5835 5.0336 48 1 10.3585 -0.2911 5.9813 49 1 10.5076 0.4033 7.5039 50 1 1.7363 -0.1819 4.6383 51 1 1.5561 -1.7338 3.7826 52 1 1.9125 1.0202 2.5120 53 1 0.4395 0.0204 2.4870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101593277.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:36 Heat of formation + Delta-G solvation = -100.484060 kcal Electronic energy + Delta-G solvation = -30360.089709 eV Core-core repulsion = 26265.062885 eV Total energy + Delta-G solvation = -4095.026823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.49392 -40.78803 -39.89839 -37.39458 -36.20116 -35.48004 -34.64605 -33.20095 -32.32129 -31.73839 -30.83234 -28.15357 -27.47361 -26.55322 -25.31754 -24.12752 -23.61190 -22.21744 -21.94040 -20.13637 -19.50303 -19.17597 -18.89872 -18.36950 -17.77458 -17.09557 -16.81842 -16.58862 -16.27514 -15.99659 -15.60483 -15.44080 -15.27686 -15.24161 -15.06391 -14.85028 -14.71752 -14.43402 -14.12318 -14.08684 -13.75048 -13.25787 -13.04820 -13.04023 -12.85577 -12.78474 -12.69081 -12.59748 -12.47465 -12.19578 -12.13401 -11.91877 -11.85118 -11.69184 -11.56467 -11.21636 -11.11570 -10.90405 -10.81061 -10.73958 -10.71601 -10.00915 -9.58695 -8.89833 -7.90369 -5.16921 1.48496 1.51178 1.57237 1.62710 1.74553 2.16827 2.24358 2.59402 3.43051 3.49160 3.72397 3.74706 3.77123 3.83610 3.93366 4.09307 4.17351 4.25718 4.32397 4.33437 4.42567 4.44455 4.48320 4.58992 4.67741 4.85231 4.87518 4.88570 4.90696 4.94779 4.97435 5.00621 5.03793 5.07900 5.15471 5.20877 5.27594 5.29936 5.39052 5.42160 5.46361 5.52493 5.59988 5.69617 5.73364 5.91047 6.05007 6.32499 6.45075 7.13025 7.18064 7.38894 7.66687 8.19891 8.40994 9.33236 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.001993 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.146277 B =14042.393001 C =15184.819965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 C -0.132 4.132 4 C 0.161 3.839 5 N -0.742 5.742 6 C -0.238 4.238 7 H 0.075 0.925 8 C -0.080 4.080 9 N -0.971 5.971 10 Si 0.971 3.029 11 H -0.279 1.279 12 H -0.299 1.299 13 H -0.277 1.277 14 C -0.063 4.063 15 C -0.135 4.135 16 C 0.108 3.892 17 N -0.606 5.606 18 C 0.512 3.488 19 O -0.591 6.591 20 C -0.139 4.139 21 C 0.159 3.841 22 N -0.728 5.728 23 C 0.696 3.304 24 N -0.846 5.846 25 O -0.653 6.653 26 C 0.112 3.888 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.014 0.986 36 H 0.374 0.626 37 H 0.249 0.751 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.045 0.955 46 H 0.050 0.950 47 H 0.418 0.582 48 H 0.416 0.584 49 H 0.420 0.580 50 H 0.073 0.927 51 H 0.080 0.920 52 H 0.060 0.940 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.977 -8.451 19.430 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.056 4.056 3 C -0.189 4.189 4 C 0.035 3.965 5 N -0.385 5.385 6 C -0.370 4.370 7 H 0.093 0.907 8 C -0.272 4.272 9 N -0.623 5.623 10 Si 0.800 3.200 11 H -0.205 1.205 12 H -0.226 1.226 13 H -0.203 1.203 14 C -0.082 4.082 15 C -0.173 4.173 16 C -0.014 4.014 17 N -0.338 5.338 18 C 0.302 3.698 19 O -0.472 6.472 20 C -0.178 4.178 21 C 0.033 3.967 22 N -0.386 5.386 23 C 0.393 3.607 24 N -0.415 5.415 25 O -0.535 6.535 26 C -0.010 4.010 27 C -0.162 4.162 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.208 0.792 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.256 0.744 48 H 0.247 0.753 49 H 0.252 0.748 50 H 0.091 0.909 51 H 0.098 0.902 52 H 0.078 0.922 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.223 -7.953 20.541 26.776 hybrid contribution 0.017 0.222 -1.666 1.680 sum 15.241 -7.731 18.875 25.462 Atomic orbital electron populations 1.21812 0.95136 1.01398 1.00835 1.20597 0.95286 0.95421 0.94270 1.21816 1.00870 0.95761 1.00431 1.20926 0.96190 0.93890 0.85530 1.42667 1.61241 1.33403 1.01234 1.19615 1.24273 1.08109 0.85044 0.90664 1.25530 1.01489 0.98684 1.01457 1.69812 1.41204 1.22460 1.28785 0.85246 0.77756 0.77194 0.79785 1.20550 1.22573 1.20324 1.21012 0.95746 0.99280 0.92202 1.22098 0.95117 1.01622 0.98461 1.22030 0.99816 0.97470 0.82085 1.48224 1.07033 1.60533 1.17994 1.20926 0.90326 0.76683 0.81901 1.90727 1.76453 1.46594 1.33380 1.21796 0.90037 1.06489 0.99528 1.20629 0.78212 1.00497 0.97371 1.44771 1.06317 1.66940 1.20604 1.16257 0.82919 0.78638 0.82866 1.42767 1.04111 1.68866 1.25740 1.90968 1.74589 1.53245 1.34683 1.21580 0.79687 1.01215 0.98528 1.21997 1.01553 0.99303 0.93305 0.91218 0.95230 0.92868 0.92424 0.95359 0.91878 0.95402 0.96813 0.79227 0.94257 0.90361 0.89898 0.91639 0.86627 0.89506 0.84594 0.85260 0.93625 0.93182 0.74416 0.75258 0.74752 0.90871 0.90175 0.92166 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 7.95 71.98 0.57 -3.44 16 2 C -0.06 -1.56 0.33 -52.18 -0.02 -1.58 16 3 C -0.13 -3.92 7.60 71.98 0.55 -3.37 16 4 C 0.16 5.86 4.80 86.38 0.41 6.27 16 5 N -0.74 -36.26 5.00 -343.46 -1.72 -37.98 16 6 C -0.24 -12.97 9.99 84.03 0.84 -12.13 16 7 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 8 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 9 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 10 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 C -0.06 -1.26 1.51 -10.76 -0.02 -1.28 16 15 C -0.14 -2.19 4.65 30.67 0.14 -2.04 16 16 C 0.11 1.11 6.34 86.36 0.55 1.66 16 17 N -0.61 -9.54 2.97 -818.91 -2.43 -11.97 16 18 C 0.51 9.55 7.70 87.66 0.67 10.23 16 19 O -0.59 -16.99 15.40 -3.03 -0.05 -17.04 16 20 C -0.14 -1.30 4.16 29.85 0.12 -1.17 16 21 C 0.16 2.62 4.96 86.38 0.43 3.04 16 22 N -0.73 -8.02 5.56 -478.55 -2.66 -10.68 16 23 C 0.70 12.04 8.84 179.05 1.58 13.62 16 24 N -0.85 -5.88 8.88 -184.75 -1.64 -7.53 16 25 O -0.65 -19.53 17.18 -3.98 -0.07 -19.60 16 26 C 0.11 2.01 6.43 86.36 0.56 2.56 16 27 C -0.12 -2.31 4.65 30.67 0.14 -2.17 16 28 H 0.07 1.73 6.40 -2.38 -0.02 1.71 16 29 H 0.03 1.09 6.86 -2.39 -0.02 1.07 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.62 6.46 -2.39 -0.02 1.60 16 32 H 0.03 1.04 6.86 -2.39 -0.02 1.02 16 33 H 0.06 1.63 6.46 -2.38 -0.02 1.62 16 34 H 0.03 0.99 6.40 -2.38 -0.02 0.97 16 35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.37 19.74 5.36 -92.70 -0.50 19.25 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.43 6.36 -2.39 -0.02 1.41 16 40 H 0.06 1.17 6.51 -2.39 -0.02 1.16 16 41 H 0.12 0.47 5.93 -2.39 -0.01 0.46 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 43 H 0.14 0.37 7.94 -2.39 -0.02 0.35 16 44 H 0.13 0.59 7.69 -2.39 -0.02 0.57 16 45 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 46 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 47 H 0.42 0.83 8.49 -92.71 -0.79 0.04 16 48 H 0.42 -0.35 8.84 -92.71 -0.82 -1.17 16 49 H 0.42 2.55 8.93 -92.71 -0.83 1.72 16 50 H 0.07 1.60 7.01 -2.39 -0.02 1.58 16 51 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 52 H 0.06 1.27 6.51 -2.39 -0.02 1.26 16 53 H 0.08 1.49 6.36 -2.39 -0.02 1.47 16 Total: -1.00 -84.50 402.74 -1.22 -85.72 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -1.96 Total: 24.30 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 7.00 Total: 6.14 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -8.17 Total: -127.06 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.12 Total: -36.64 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -84.50 -1.22 -85.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101593277.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.762 kcal (2) G-P(sol) polarization free energy of solvation -84.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds