Wall clock time and date at job start Sat Apr 11 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99671 * 4 3 2 6 6 N 1.46500 * 109.47520 * 64.99751 * 4 3 2 7 7 C 1.34782 * 119.99889 * 59.99796 * 6 4 3 8 8 N 1.34771 * 119.99657 * 180.02562 * 7 6 4 9 9 O 1.21582 * 120.00012 * 0.02562 * 7 6 4 10 10 C 1.50701 * 109.47348 * 184.99767 * 4 3 2 11 11 O 1.21276 * 120.00139 * 260.00045 * 10 4 3 12 12 N 1.34779 * 119.99918 * 79.99776 * 10 4 3 13 13 C 1.47489 * 127.03156 * 0.02562 * 12 10 4 14 14 C 1.54008 * 107.08133 * 154.51806 * 13 12 10 15 15 H 1.09001 * 110.32777 * 120.19552 * 14 13 12 16 16 C 1.53000 * 110.33020 * 242.31676 * 14 13 12 17 17 C 1.54624 * 105.04169 * 1.30905 * 14 13 12 18 18 H 1.09001 * 110.74212 * 263.50899 * 17 14 13 19 19 C 1.53002 * 110.73831 * 140.18508 * 17 14 13 20 20 C 1.52997 * 109.47060 * 174.99731 * 19 17 14 21 21 N 1.46506 * 109.46999 * 180.02562 * 20 19 17 22 22 C 1.36938 * 119.99643 * 180.02562 * 21 20 19 23 23 H 1.07995 * 120.00493 * 0.02562 * 22 21 20 24 24 C 1.38814 * 119.99638 * 180.02562 * 22 21 20 25 25 N 1.31620 * 120.00305 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99955 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47515 * 59.99906 * 26 24 22 28 28 H 1.48503 * 109.47125 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.47285 * 299.99577 * 26 24 22 30 30 C 1.48111 * 127.03468 * 179.71154 * 12 10 4 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 37 37 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 38 38 H 0.97003 * 120.00455 * 240.00645 * 6 4 3 39 39 H 0.96997 * 120.00710 * 359.97438 * 8 7 6 40 40 H 0.97002 * 119.99687 * 179.97438 * 8 7 6 41 41 H 1.08993 * 109.91671 * 273.88083 * 13 12 10 42 42 H 1.09002 * 109.91016 * 35.16349 * 13 12 10 43 43 H 1.09000 * 109.47317 * 58.54112 * 16 14 13 44 44 H 1.08998 * 109.47281 * 178.54895 * 16 14 13 45 45 H 1.08998 * 109.46857 * 298.54742 * 16 14 13 46 46 H 1.08998 * 109.47322 * 294.99827 * 19 17 14 47 47 H 1.09003 * 109.46826 * 55.00188 * 19 17 14 48 48 H 1.08997 * 109.47595 * 299.99953 * 20 19 17 49 49 H 1.08995 * 109.47277 * 60.00006 * 20 19 17 50 50 H 0.96994 * 119.99850 * 0.02562 * 21 20 19 51 51 H 0.97000 * 120.00245 * 180.02562 * 25 24 22 52 52 H 1.08999 * 110.66266 * 337.77433 * 30 12 10 53 53 H 1.09002 * 110.66615 * 100.88178 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 7 4.0589 0.8586 -1.2508 7 6 3.7338 1.4238 -2.4304 8 7 4.1832 0.8862 -3.5817 9 8 3.0352 2.4185 -2.4559 10 6 4.0723 2.8580 0.1244 11 8 4.4468 3.4569 -0.8614 12 7 4.1053 3.4583 1.3307 13 6 3.6910 2.8795 2.6225 14 6 4.4745 3.6204 3.7221 15 1 3.7873 4.1127 4.4103 16 6 5.3772 2.6452 4.4805 17 6 5.3256 4.6700 2.9706 18 1 6.3353 4.2969 2.7988 19 6 5.3586 5.9921 3.7398 20 6 6.3060 6.9670 3.0379 21 7 6.3381 8.2329 3.7748 22 6 7.1224 9.2638 3.3309 23 1 7.7171 9.1440 2.4374 24 6 7.1532 10.4630 4.0294 25 7 6.4281 10.6093 5.1181 26 14 8.2226 11.8696 3.4235 27 1 7.7967 12.2619 2.0561 28 1 8.0785 13.0306 4.3383 29 1 9.6423 11.4351 3.3943 30 6 4.5710 4.8318 1.6312 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 4.6166 0.0651 -1.2305 39 1 4.7409 0.0929 -3.5614 40 1 3.9490 1.2928 -4.4307 41 1 2.6205 3.0241 2.7678 42 1 3.9316 1.8167 2.6473 43 1 6.0662 2.1699 3.7823 44 1 5.9435 3.1879 5.2373 45 1 4.7648 1.8829 4.9621 46 1 4.3562 6.4191 3.7717 47 1 5.7095 5.8126 4.7561 48 1 7.3084 6.5402 3.0060 49 1 5.9552 7.1466 2.0217 50 1 5.8037 8.3406 4.5771 51 1 6.4493 11.4474 5.6060 52 1 5.2444 5.1886 0.8519 53 1 3.7243 5.5081 1.7484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104952359.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:52 Heat of formation + Delta-G solvation = -97.063645 kcal Electronic energy + Delta-G solvation = -30776.574756 eV Core-core repulsion = 26681.696252 eV Total energy + Delta-G solvation = -4094.878503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.75162 -40.51306 -38.89514 -36.89218 -36.83221 -34.87495 -34.55320 -33.80747 -33.38708 -31.85663 -30.22040 -28.39880 -27.27680 -26.22405 -25.14689 -23.96611 -22.84283 -22.15274 -21.54563 -21.01068 -20.11112 -19.58694 -19.17767 -18.22099 -17.78462 -17.06595 -16.69986 -16.63516 -16.25284 -15.82503 -15.78042 -15.38584 -15.25224 -15.19187 -15.04487 -14.78937 -14.53864 -14.29669 -14.14939 -13.98911 -13.54158 -13.34648 -13.16773 -13.01474 -12.87343 -12.79947 -12.66361 -12.38021 -12.29079 -12.25325 -12.16672 -11.99510 -11.90217 -11.64232 -11.55326 -11.48896 -11.25582 -11.23471 -10.94385 -10.82419 -10.47471 -9.90041 -9.62772 -9.03297 -7.98230 -5.27374 1.44234 1.47878 1.54064 1.61547 1.77455 2.17018 2.45248 2.53598 3.34452 3.36804 3.60222 3.67145 3.71682 3.80505 3.92741 3.96269 4.11534 4.24342 4.27093 4.32613 4.34545 4.47950 4.51377 4.61722 4.64962 4.68969 4.73069 4.77446 4.79593 4.92595 4.95930 4.99278 5.04326 5.06403 5.14832 5.23656 5.26829 5.31405 5.33614 5.36852 5.43806 5.46347 5.48499 5.52375 5.59767 5.96545 6.10171 6.24740 6.61792 7.19598 7.23497 7.30584 7.84684 8.06310 8.30881 9.24984 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.002241 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.450851 B =12493.984937 C =13578.860986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.129 4.129 4 C 0.166 3.834 5 H 0.153 0.847 6 N -0.720 5.720 7 C 0.700 3.300 8 N -0.855 5.855 9 O -0.620 6.620 10 C 0.504 3.496 11 O -0.566 6.566 12 N -0.621 5.621 13 C 0.101 3.899 14 C -0.096 4.096 15 H 0.095 0.905 16 C -0.138 4.138 17 C -0.079 4.079 18 H 0.079 0.921 19 C -0.099 4.099 20 C 0.150 3.850 21 N -0.746 5.746 22 C -0.252 4.252 23 H 0.070 0.930 24 C -0.074 4.074 25 N -0.967 5.967 26 Si 0.974 3.026 27 H -0.281 1.281 28 H -0.290 1.290 29 H -0.276 1.276 30 C 0.108 3.892 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.419 0.581 39 H 0.412 0.588 40 H 0.415 0.585 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.015 0.985 49 H 0.008 0.992 50 H 0.376 0.624 51 H 0.253 0.747 52 H 0.049 0.951 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.827 -34.487 -7.227 36.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.168 4.168 4 C 0.056 3.944 5 H 0.171 0.829 6 N -0.378 5.378 7 C 0.398 3.602 8 N -0.424 5.424 9 O -0.499 6.499 10 C 0.293 3.707 11 O -0.443 6.443 12 N -0.356 5.356 13 C -0.020 4.020 14 C -0.115 4.115 15 H 0.113 0.887 16 C -0.196 4.196 17 C -0.099 4.099 18 H 0.097 0.903 19 C -0.137 4.137 20 C 0.024 3.976 21 N -0.389 5.389 22 C -0.384 4.384 23 H 0.087 0.913 24 C -0.267 4.267 25 N -0.618 5.618 26 Si 0.803 3.197 27 H -0.207 1.207 28 H -0.216 1.216 29 H -0.202 1.202 30 C -0.015 4.015 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.257 0.743 39 H 0.242 0.758 40 H 0.247 0.753 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.033 0.967 49 H 0.026 0.974 50 H 0.208 0.792 51 H 0.062 0.938 52 H 0.068 0.932 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.105 -33.349 -7.840 35.448 hybrid contribution 0.893 1.308 -0.645 1.710 sum -8.212 -32.041 -8.486 34.148 Atomic orbital electron populations 1.21765 0.95898 1.02104 1.01330 1.21414 0.95787 0.94136 1.03117 1.21940 0.91891 0.99735 1.03188 1.20807 0.95928 0.89669 0.88006 0.82935 1.44546 1.57198 1.32895 1.03198 1.16212 0.80100 0.81972 0.81942 1.42791 1.58134 1.34749 1.06765 1.90952 1.44248 1.27911 1.86748 1.21492 0.77931 0.90266 0.81049 1.90758 1.48999 1.67072 1.37474 1.48931 1.64183 1.14985 1.07491 1.22536 0.99604 0.99488 0.80413 1.22152 0.97335 0.95580 0.96434 0.88707 1.21824 0.99253 0.98629 0.99858 1.22109 0.99449 0.95057 0.93318 0.90267 1.21556 0.99284 0.93535 0.99307 1.20832 0.96821 0.85893 0.94102 1.42570 1.53936 1.11385 1.31041 1.19581 1.18678 0.92951 1.07164 0.91253 1.25586 1.02261 1.00659 0.98165 1.69797 1.45658 1.26382 1.19915 0.85205 0.78696 0.78634 0.77188 1.20708 1.21593 1.20232 1.22352 0.97892 0.84355 0.96886 0.91441 0.94669 0.92244 0.89091 0.92178 0.92903 0.90121 0.74348 0.75764 0.75276 0.89893 0.87317 0.92447 0.92904 0.89913 0.91828 0.90818 0.96682 0.97384 0.79231 0.93810 0.93239 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.11 -1.03 5.82 30.60 0.18 -0.85 16 3 C -0.13 -2.07 4.54 30.60 0.14 -1.93 16 4 C 0.17 2.61 2.47 44.24 0.11 2.72 16 5 H 0.15 0.95 6.99 -2.39 -0.02 0.94 16 6 N -0.72 -10.58 4.66 -461.41 -2.15 -12.72 16 7 C 0.70 15.84 7.59 179.05 1.36 17.20 16 8 N -0.85 -11.39 8.88 -184.75 -1.64 -13.03 16 9 O -0.62 -21.64 13.03 18.49 0.24 -21.40 16 10 C 0.50 13.62 6.88 87.66 0.60 14.22 16 11 O -0.57 -22.10 13.89 19.44 0.27 -21.83 16 12 N -0.62 -14.51 3.29 -810.11 -2.67 -17.17 16 13 C 0.10 1.37 6.05 86.53 0.52 1.89 16 14 C -0.10 -1.52 3.17 -9.90 -0.03 -1.55 16 15 H 0.09 1.45 7.85 -2.39 -0.02 1.43 16 16 C -0.14 -1.68 8.90 71.98 0.64 -1.04 16 17 C -0.08 -1.94 2.58 -9.70 -0.02 -1.97 16 18 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 19 C -0.10 -3.08 4.70 30.59 0.14 -2.94 16 20 C 0.15 6.36 6.15 86.38 0.53 6.89 16 21 N -0.75 -40.02 5.60 -343.45 -1.92 -41.94 16 22 C -0.25 -14.89 9.99 84.03 0.84 -14.05 16 23 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 24 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 25 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 26 Si 0.97 47.83 29.55 68.60 2.03 49.86 16 27 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 28 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 30 C 0.11 3.14 5.92 86.61 0.51 3.65 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.06 0.61 7.75 -2.39 -0.02 0.59 16 36 H 0.05 1.37 6.04 -2.39 -0.01 1.35 16 37 H 0.08 1.16 7.62 -2.39 -0.02 1.14 16 38 H 0.42 2.46 8.84 -92.71 -0.82 1.64 16 39 H 0.41 2.06 8.84 -92.71 -0.82 1.24 16 40 H 0.42 5.45 8.93 -92.71 -0.83 4.63 16 41 H 0.08 0.94 8.00 -2.39 -0.02 0.92 16 42 H 0.11 0.70 6.52 -2.39 -0.02 0.69 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 2.02 7.99 -2.39 -0.02 2.00 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.01 0.37 7.67 -2.39 -0.02 0.35 16 50 H 0.38 20.91 7.67 -92.71 -0.71 20.20 16 51 H 0.25 15.29 8.31 -92.71 -0.77 14.51 16 52 H 0.05 1.76 7.83 -2.39 -0.02 1.74 16 53 H 0.06 1.94 7.93 -2.39 -0.02 1.92 16 Total: -1.00 -90.48 417.21 -1.10 -91.58 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -2.24 Total: 29.63 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.70 Total: 17.32 kcal Atomic # 7 Polarization: -137.06 SS G_CDS: -8.10 Total: -145.16 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: 0.51 Total: -43.23 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -90.48 -1.10 -91.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104952359.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.484 kcal (2) G-P(sol) polarization free energy of solvation -90.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds