Wall clock time and date at job start Sat Apr 11 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48493 * 109.47604 * 270.00256 * 3 2 1 5 5 H 1.48506 * 109.47125 * 30.00835 * 3 2 1 6 6 H 1.48502 * 109.47053 * 150.00037 * 3 2 1 7 7 C 1.37878 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.52988 * 109.47288 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47459 * 305.00055 * 11 10 9 13 13 N 1.46895 * 109.47383 * 65.00219 * 11 10 9 14 14 C 1.50698 * 109.47316 * 185.00369 * 11 10 9 15 15 O 1.21286 * 119.99978 * 260.00319 * 14 11 10 16 16 N 1.34775 * 120.00223 * 79.99694 * 14 11 10 17 17 C 1.46507 * 120.00033 * 180.02562 * 16 14 11 18 18 C 1.53000 * 109.46914 * 180.02562 * 17 16 14 19 19 C 1.53008 * 109.46899 * 179.97438 * 18 17 16 20 20 N 1.46897 * 109.46633 * 180.02562 * 19 18 17 21 21 C 1.46848 * 111.00171 * 293.95015 * 20 19 18 22 22 C 1.53039 * 109.51997 * 174.16537 * 21 20 19 23 23 C 1.53119 * 109.28129 * 59.18522 * 22 21 20 24 24 C 1.53119 * 109.15731 * 302.34211 * 23 22 21 25 25 H 1.09002 * 109.50244 * 297.71261 * 24 23 22 26 26 C 1.50695 * 109.50187 * 177.63352 * 24 23 22 27 27 N 1.34780 * 120.00041 * 60.08113 * 26 24 23 28 28 O 1.21284 * 120.00296 * 240.07788 * 26 24 23 29 29 C 1.46855 * 110.99462 * 169.74510 * 20 19 18 30 30 H 0.97000 * 120.00411 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47213 * 59.99613 * 9 7 2 32 32 H 1.08997 * 109.47174 * 300.00238 * 9 7 2 33 33 H 1.09000 * 109.47033 * 59.99784 * 10 9 7 34 34 H 1.09001 * 109.46923 * 300.00221 * 10 9 7 35 35 H 1.00904 * 111.00473 * 60.00018 * 13 11 10 36 36 H 1.00900 * 111.00123 * 183.95569 * 13 11 10 37 37 H 0.96995 * 120.00216 * 0.02562 * 16 14 11 38 38 H 1.08996 * 109.47150 * 59.99604 * 17 16 14 39 39 H 1.09002 * 109.46872 * 300.00190 * 17 16 14 40 40 H 1.08997 * 109.47305 * 60.00276 * 18 17 16 41 41 H 1.08992 * 109.47353 * 299.99638 * 18 17 16 42 42 H 1.08997 * 109.46725 * 60.00156 * 19 18 17 43 43 H 1.09002 * 109.47072 * 300.00238 * 19 18 17 44 44 H 1.09001 * 109.45994 * 54.14761 * 21 20 19 45 45 H 1.09003 * 109.46354 * 294.18321 * 21 20 19 46 46 H 1.08998 * 109.50346 * 299.23617 * 22 21 20 47 47 H 1.09004 * 109.49572 * 179.12222 * 22 21 20 48 48 H 1.08999 * 109.52354 * 182.43479 * 23 22 21 49 49 H 1.09000 * 109.52348 * 62.24713 * 23 22 21 50 50 H 0.96998 * 119.99957 * 359.97438 * 27 26 24 51 51 H 0.96993 * 120.00210 * 179.97438 * 27 26 24 52 52 H 1.09003 * 109.46449 * 65.82226 * 29 20 19 53 53 H 1.08992 * 109.46444 * 305.85442 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 1 0.7891 -5.0072 0.8414 13 7 0.7273 -5.1183 -1.2555 14 6 2.4551 -6.1298 0.1215 15 8 2.7859 -6.7532 -0.8649 16 7 2.9593 -6.4590 1.3272 17 6 3.9073 -7.5696 1.4463 18 6 4.3211 -7.7321 2.9103 19 6 5.3107 -8.8924 3.0348 20 7 5.7074 -9.0488 4.4405 21 6 6.4737 -7.8849 4.9037 22 6 6.7438 -8.0148 6.4045 23 6 7.5283 -9.3032 6.6674 24 6 6.7303 -10.4954 6.1322 25 1 5.7831 -10.5687 6.6665 26 6 7.5215 -11.7619 6.3347 27 7 7.8778 -12.1425 7.5775 28 8 7.8375 -12.4389 5.3792 29 6 6.4606 -10.2937 4.6393 30 1 -0.4851 0.8400 0.0004 31 1 0.6240 -2.5568 -0.8902 32 1 0.6247 -2.5572 0.8896 33 1 2.8726 -3.6047 0.8877 34 1 2.8713 -3.6039 -0.8923 35 1 1.3462 -5.1025 -2.0523 36 1 0.1629 -5.9547 -1.2526 37 1 2.6946 -5.9607 2.1161 38 1 4.7889 -7.3614 0.8401 39 1 3.4359 -8.4887 1.0981 40 1 3.4393 -7.9407 3.5161 41 1 4.7924 -6.8133 3.2589 42 1 6.1925 -8.6843 2.4290 43 1 4.8390 -9.8113 2.6864 44 1 5.9029 -6.9757 4.7147 45 1 7.4212 -7.8369 4.3670 46 1 5.7968 -8.0489 6.9430 47 1 7.3260 -7.1584 6.7448 48 1 7.6854 -9.4217 7.7395 49 1 8.4919 -9.2528 6.1605 50 1 7.6254 -11.6010 8.3417 51 1 8.3867 -12.9578 7.7079 52 1 7.4082 -10.2344 4.1038 53 1 5.8804 -11.1340 4.2583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118131021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:29 Heat of formation + Delta-G solvation = -134.576939 kcal Electronic energy + Delta-G solvation = -29063.723240 eV Core-core repulsion = 24967.218038 eV Total energy + Delta-G solvation = -4096.505202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.21287 -40.98406 -39.36093 -37.09828 -36.55471 -35.20222 -34.79140 -34.30343 -32.08710 -31.91593 -31.69999 -28.37163 -26.91682 -25.57397 -25.01665 -23.77253 -22.65121 -22.28692 -21.55656 -20.92215 -20.58177 -18.64204 -18.44430 -17.98564 -17.77881 -17.40215 -16.96973 -16.71508 -16.59829 -16.38554 -16.00707 -15.78946 -15.38197 -15.27605 -15.14477 -14.92400 -14.77906 -14.37858 -14.25447 -14.05516 -13.82031 -13.64169 -13.40680 -13.19948 -12.80475 -12.76328 -12.59536 -12.49732 -12.46451 -12.22652 -12.05819 -11.75352 -11.67340 -11.62772 -11.56489 -11.37478 -11.23104 -10.98091 -10.85827 -10.66340 -10.47283 -10.12744 -9.60965 -9.37542 -8.12151 -6.22338 1.42882 1.44257 1.52551 1.55144 1.59872 2.13948 2.45395 2.47578 3.02449 3.20908 3.59653 3.61306 3.76093 3.85164 3.88336 3.97546 4.07266 4.11944 4.14506 4.25817 4.28453 4.34386 4.38138 4.46321 4.57143 4.64882 4.66963 4.73580 4.75891 4.80511 4.92869 4.95582 4.96813 5.09886 5.11624 5.18059 5.20275 5.27779 5.41172 5.43435 5.59147 5.86887 5.88260 6.00766 6.00960 6.07627 6.11979 6.32344 6.44317 6.47300 6.55944 6.96459 7.17083 7.32948 7.45709 8.98961 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.001657 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.574335 B =16890.810628 C =18351.059206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.081 4.081 11 C 0.085 3.915 12 H 0.113 0.887 13 N -0.820 5.820 14 C 0.487 3.513 15 O -0.586 6.586 16 N -0.714 5.714 17 C 0.121 3.879 18 C -0.111 4.111 19 C 0.060 3.940 20 N -0.534 5.534 21 C 0.041 3.959 22 C -0.111 4.111 23 C -0.108 4.108 24 C -0.098 4.098 25 H 0.124 0.876 26 C 0.520 3.480 27 N -0.834 5.834 28 O -0.598 6.598 29 C 0.077 3.923 30 H 0.262 0.738 31 H 0.005 0.995 32 H -0.004 1.004 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.344 0.656 36 H 0.346 0.654 37 H 0.416 0.584 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.024 0.976 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.419 0.581 51 H 0.407 0.593 52 H 0.021 0.979 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.858 -23.027 21.336 34.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.120 4.120 11 C -0.030 4.030 12 H 0.130 0.870 13 N -0.349 5.349 14 C 0.272 3.728 15 O -0.467 6.467 16 N -0.367 5.367 17 C -0.004 4.004 18 C -0.149 4.149 19 C -0.068 4.068 20 N -0.258 5.258 21 C -0.087 4.087 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.120 4.120 25 H 0.142 0.858 26 C 0.305 3.695 27 N -0.398 5.398 28 O -0.478 6.478 29 C -0.052 4.052 30 H 0.070 0.930 31 H 0.023 0.977 32 H 0.015 0.985 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.252 0.748 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.043 0.957 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.117 0.883 49 H 0.072 0.928 50 H 0.250 0.750 51 H 0.238 0.762 52 H 0.040 0.960 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.283 -23.001 20.450 33.930 hybrid contribution 1.521 0.029 -0.402 1.574 sum 15.804 -22.972 20.048 34.342 Atomic orbital electron populations 1.70103 1.07609 1.27472 1.51738 1.25888 0.95689 1.02972 0.94999 0.85546 0.78797 0.79022 0.78240 1.20322 1.20719 1.18744 1.21746 0.93376 0.92769 1.50361 0.92614 1.18838 0.93913 0.91321 0.95833 1.21386 0.97715 0.92100 1.00782 1.21645 0.93747 0.92067 0.95572 0.86973 1.58982 1.27254 1.45276 1.03354 1.22384 0.81985 0.85311 0.83105 1.90639 1.62222 1.55417 1.38408 1.46028 1.45847 1.34982 1.09795 1.21286 0.92038 0.89249 0.97812 1.21643 1.00434 0.99108 0.93756 1.21942 0.97547 0.99205 0.88151 1.61913 1.42383 1.02289 1.19251 1.22337 0.95849 0.93657 0.96842 1.21577 1.01386 0.97457 0.94481 1.21600 0.97674 0.92826 1.02438 1.21292 1.00693 0.92312 0.97664 0.85768 1.20901 0.78700 0.86734 0.83152 1.43725 1.58359 1.29698 1.08022 1.90748 1.57404 1.57272 1.42407 1.21730 0.96096 0.92200 0.95165 0.92961 0.97695 0.98532 0.91254 0.94117 0.84230 0.84053 0.74754 0.93008 0.92110 0.89351 0.90314 0.95058 0.90365 0.89579 0.95730 0.89918 0.89686 0.88308 0.92782 0.74959 0.76213 0.96027 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -30.78 9.11 25.60 0.23 -30.54 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.04 1.97 4.86 29.85 0.15 2.12 16 10 C -0.08 -3.25 4.78 30.59 0.15 -3.10 16 11 C 0.09 2.80 3.15 44.17 0.14 2.94 16 12 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 13 N -0.82 -27.96 8.44 -171.83 -1.45 -29.41 16 14 C 0.49 14.86 7.07 87.66 0.62 15.48 16 15 O -0.59 -21.70 16.25 -3.05 -0.05 -21.75 16 16 N -0.71 -16.20 5.56 -463.05 -2.57 -18.77 16 17 C 0.12 2.41 5.67 86.38 0.49 2.90 16 18 C -0.11 -1.56 5.26 30.60 0.16 -1.40 16 19 C 0.06 0.89 4.96 86.31 0.43 1.32 16 20 N -0.53 -7.38 4.66 -896.32 -4.17 -11.56 16 21 C 0.04 0.48 5.29 86.33 0.46 0.94 16 22 C -0.11 -0.80 6.09 30.65 0.19 -0.61 16 23 C -0.11 -0.69 5.16 30.67 0.16 -0.53 16 24 C -0.10 -0.97 2.69 -11.49 -0.03 -1.01 16 25 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 26 C 0.52 6.92 7.43 87.66 0.65 7.57 16 27 N -0.83 -3.80 8.78 -173.53 -1.52 -5.32 16 28 O -0.60 -14.33 16.82 -3.04 -0.05 -14.38 16 29 C 0.08 1.19 4.04 86.32 0.35 1.54 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.00 0.26 7.75 -2.39 -0.02 0.25 16 32 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.34 12.11 8.58 -89.69 -0.77 11.34 16 36 H 0.35 10.14 9.06 -89.69 -0.81 9.33 16 37 H 0.42 7.45 8.47 -92.71 -0.79 6.66 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.04 6.44 -2.39 -0.02 1.02 16 42 H 0.03 0.51 8.12 -2.39 -0.02 0.50 16 43 H 0.08 1.18 7.98 -2.39 -0.02 1.16 16 44 H 0.09 0.97 6.22 -2.39 -0.01 0.96 16 45 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.08 0.45 8.14 -2.38 -0.02 0.44 16 48 H 0.10 0.08 7.65 -2.39 -0.02 0.06 16 49 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.42 -0.92 8.30 -92.71 -0.77 -1.69 16 51 H 0.41 1.48 8.93 -92.71 -0.83 0.65 16 52 H 0.02 0.42 8.08 -2.39 -0.02 0.40 16 53 H 0.07 1.25 7.99 -2.39 -0.02 1.23 16 Total: -1.00 -79.01 423.00 -5.93 -84.94 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -3.01 Total: 27.95 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 4.60 Total: -1.79 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -9.43 Total: -121.18 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.10 Total: -36.13 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -79.01 -5.93 -84.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118131021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.639 kcal (2) G-P(sol) polarization free energy of solvation -79.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds