Wall clock time and date at job start Sat Apr 11 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47165 * 55.00163 * 11 10 9 13 13 N 1.46898 * 109.47542 * 294.99983 * 11 10 9 14 14 C 1.50708 * 109.47139 * 174.99712 * 11 10 9 15 15 O 1.21284 * 119.99720 * 99.99690 * 14 11 10 16 16 N 1.34774 * 119.99974 * 280.00620 * 14 11 10 17 17 C 1.46504 * 119.99549 * 180.02562 * 16 14 11 18 18 C 1.53008 * 109.46879 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47186 * 179.97438 * 18 17 16 20 20 N 1.46897 * 109.46968 * 180.02562 * 19 18 17 21 21 C 1.46846 * 111.00213 * 66.04361 * 20 19 18 22 22 C 1.53038 * 109.52125 * 174.15919 * 21 20 19 23 23 C 1.53122 * 109.27960 * 59.18303 * 22 21 20 24 24 C 1.53116 * 109.16008 * 302.34560 * 23 22 21 25 25 H 1.09000 * 109.50364 * 297.71169 * 24 23 22 26 26 C 1.50692 * 109.50435 * 177.63465 * 24 23 22 27 27 N 1.34781 * 120.00241 * 59.99825 * 26 24 23 28 28 O 1.21281 * 120.00038 * 240.00030 * 26 24 23 29 29 C 1.46856 * 110.99824 * 301.83411 * 20 19 18 30 30 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 32 32 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 33 33 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 34 34 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 35 35 H 1.00906 * 110.99610 * 299.99813 * 13 11 10 36 36 H 1.00896 * 110.99777 * 63.95390 * 13 11 10 37 37 H 0.96995 * 120.00357 * 359.97438 * 16 14 11 38 38 H 1.08997 * 109.47128 * 299.99077 * 17 16 14 39 39 H 1.08994 * 109.47282 * 59.99860 * 17 16 14 40 40 H 1.08999 * 109.46935 * 300.00445 * 18 17 16 41 41 H 1.09005 * 109.46882 * 59.99610 * 18 17 16 42 42 H 1.08998 * 109.46944 * 300.00185 * 19 18 17 43 43 H 1.08996 * 109.46478 * 59.99966 * 19 18 17 44 44 H 1.08998 * 109.46376 * 294.17642 * 21 20 19 45 45 H 1.09004 * 109.45842 * 54.14655 * 21 20 19 46 46 H 1.09002 * 109.50279 * 179.12568 * 22 21 20 47 47 H 1.09001 * 109.50461 * 299.24236 * 22 21 20 48 48 H 1.08999 * 109.52273 * 62.24980 * 23 22 21 49 49 H 1.08992 * 109.52120 * 182.44018 * 23 22 21 50 50 H 0.96997 * 119.99410 * 0.02562 * 27 26 24 51 51 H 0.96997 * 120.00307 * 180.02562 * 27 26 24 52 52 H 1.08994 * 109.46315 * 305.85896 * 29 20 19 53 53 H 1.09006 * 109.45847 * 65.83005 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 1 0.7884 -5.0068 -0.8441 13 7 0.7279 -5.1187 1.2528 14 6 2.4548 -6.1298 -0.1257 15 8 2.7863 -6.7535 0.8603 16 7 2.9583 -6.4586 -1.3318 17 6 3.9053 -7.5699 -1.4520 18 6 4.3184 -7.7319 -2.9164 19 6 5.3079 -8.8920 -3.0419 20 7 5.7049 -9.0470 -4.4477 21 6 6.4712 -7.8827 -4.9096 22 6 6.9905 -8.1413 -6.3257 23 6 5.8049 -8.3987 -7.2599 24 6 4.9958 -9.5856 -6.7297 25 1 5.6189 -10.4800 -6.7302 26 6 3.7941 -9.8092 -7.6111 27 7 3.9604 -10.0874 -8.9194 28 8 2.6774 -9.7388 -7.1433 29 6 4.5343 -9.2852 -5.3019 30 1 -0.4849 0.8401 0.0004 31 1 0.6240 -2.5575 0.8880 32 1 0.6246 -2.5563 -0.8919 33 1 2.8725 -3.6039 -0.8910 34 1 2.8713 -3.6047 0.8890 35 1 1.3474 -5.1032 2.0492 36 1 0.0231 -4.4007 1.3289 37 1 2.6930 -5.9600 -2.1204 38 1 4.7874 -7.3627 -0.8462 39 1 3.4333 -8.4888 -1.1043 40 1 3.4361 -7.9391 -3.5219 41 1 4.7902 -6.8130 -3.2645 42 1 6.1900 -8.6842 -2.4363 43 1 4.8363 -9.8109 -2.6936 44 1 5.8278 -7.0028 -4.9137 45 1 7.3138 -7.7132 -4.2391 46 1 7.5462 -7.2707 -6.6743 47 1 7.6450 -9.0130 -6.3198 48 1 5.1708 -7.5128 -7.2962 49 1 6.1722 -8.6261 -8.2605 50 1 4.8535 -10.1441 -9.2935 51 1 3.1869 -10.2310 -9.4868 52 1 3.9701 -10.1343 -4.9163 53 1 3.9000 -8.3986 -5.3042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118131023.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:33 Heat of formation + Delta-G solvation = -133.836562 kcal Electronic energy + Delta-G solvation = -29577.979166 eV Core-core repulsion = 25481.506070 eV Total energy + Delta-G solvation = -4096.473096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.26577 -40.91272 -39.46074 -37.27804 -36.59937 -35.19383 -34.85159 -34.28643 -31.95603 -31.71580 -31.58862 -28.41572 -26.92617 -25.56066 -25.26626 -23.97574 -22.78594 -22.37370 -21.57019 -21.06973 -20.22323 -18.87618 -18.49593 -18.09521 -17.69511 -17.30279 -16.79949 -16.55981 -16.46793 -16.04160 -15.97681 -15.80963 -15.56118 -15.35858 -15.20959 -14.94592 -14.70156 -14.63565 -14.14816 -14.09314 -13.88029 -13.59584 -13.47693 -13.22558 -13.02236 -12.91394 -12.68592 -12.56430 -12.53549 -12.49429 -11.94679 -11.82860 -11.74294 -11.66419 -11.57196 -11.33465 -11.32106 -10.85240 -10.79519 -10.64595 -10.57691 -10.13414 -9.67314 -9.29014 -8.22829 -6.33521 1.38378 1.39300 1.50004 1.58937 1.62474 2.11982 2.38804 2.47690 3.07944 3.10625 3.63413 3.72636 3.75459 3.81806 3.88925 3.90686 3.95260 4.10266 4.19110 4.22856 4.25379 4.30463 4.35033 4.51655 4.54989 4.62180 4.63871 4.74923 4.79257 4.81116 4.85284 4.89870 4.98753 5.06233 5.08375 5.13883 5.17797 5.21383 5.41975 5.42668 5.44631 5.63219 5.78743 5.89844 6.02919 6.05298 6.11517 6.19314 6.45733 6.46414 6.49700 6.81862 7.20032 7.35283 7.35592 8.87980 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.001968 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.431366 B =14225.993406 C =15172.688572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.107 0.893 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.572 6.572 16 N -0.722 5.722 17 C 0.127 3.873 18 C -0.157 4.157 19 C 0.061 3.939 20 N -0.530 5.530 21 C 0.040 3.960 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.098 4.098 25 H 0.124 0.876 26 C 0.518 3.482 27 N -0.835 5.835 28 O -0.597 6.597 29 C 0.072 3.928 30 H 0.264 0.736 31 H 0.003 0.997 32 H 0.001 0.999 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.344 0.656 36 H 0.353 0.647 37 H 0.411 0.589 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.029 0.971 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.052 0.948 49 H 0.097 0.903 50 H 0.418 0.582 51 H 0.406 0.594 52 H 0.067 0.933 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.649 -21.671 -20.324 34.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.036 4.036 12 H 0.124 0.876 13 N -0.362 5.362 14 C 0.312 3.688 15 O -0.451 6.451 16 N -0.374 5.374 17 C 0.003 3.997 18 C -0.197 4.197 19 C -0.067 4.067 20 N -0.252 5.252 21 C -0.087 4.087 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.120 4.120 25 H 0.142 0.858 26 C 0.303 3.697 27 N -0.399 5.399 28 O -0.477 6.477 29 C -0.057 4.057 30 H 0.073 0.927 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.247 0.753 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.048 0.952 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.071 0.929 49 H 0.116 0.884 50 H 0.250 0.750 51 H 0.237 0.763 52 H 0.086 0.914 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 16.229 -23.081 -19.504 34.301 hybrid contribution -0.438 2.849 -0.237 2.892 sum 15.791 -20.233 -19.741 32.379 Atomic orbital electron populations 1.70072 1.07528 1.27784 1.51313 1.25903 0.95774 1.03104 0.94751 0.85506 0.78605 0.78790 0.78508 1.19658 1.20797 1.19160 1.21611 0.93357 0.92396 1.50884 0.92644 1.18975 0.94043 0.92071 0.95690 1.22123 0.98771 0.93648 1.01416 1.21416 0.94786 0.91470 0.95895 0.87554 1.58754 1.18411 1.55660 1.03355 1.20716 0.80896 0.84116 0.83067 1.90616 1.61447 1.54636 1.38394 1.45961 1.46640 1.35462 1.09377 1.21271 0.92118 0.88940 0.97360 1.22389 1.01129 1.01481 0.94668 1.22138 0.98189 0.97091 0.89312 1.62218 1.21558 1.39596 1.01870 1.22304 0.97627 0.90828 0.97952 1.21573 0.97196 1.03405 0.92657 1.21602 0.96657 0.95845 1.00548 1.21301 0.94641 1.02661 0.93396 0.85795 1.20962 0.90441 0.74470 0.83825 1.43733 1.13815 1.73066 1.09297 1.90761 1.28364 1.53246 1.75352 1.21783 0.91374 1.00464 0.92072 0.92725 0.97912 0.98093 0.91579 0.93623 0.84280 0.83249 0.75319 0.91864 0.92150 0.91422 0.90698 0.89114 0.90085 0.95231 0.89757 0.89741 0.89893 0.92932 0.88433 0.74993 0.76292 0.91439 0.95326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -30.17 9.11 25.60 0.23 -29.93 16 8 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.46 4.74 29.85 0.14 1.61 16 10 C -0.12 -4.77 4.78 30.59 0.15 -4.62 16 11 C 0.08 2.78 3.21 44.17 0.14 2.93 16 12 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 13 N -0.83 -29.91 8.94 -171.80 -1.54 -31.45 16 14 C 0.53 17.81 7.08 87.66 0.62 18.43 16 15 O -0.57 -23.04 16.25 -3.04 -0.05 -23.08 16 16 N -0.72 -18.78 5.56 -463.04 -2.57 -21.36 16 17 C 0.13 2.79 5.68 86.38 0.49 3.28 16 18 C -0.16 -2.61 4.63 30.60 0.14 -2.47 16 19 C 0.06 0.87 5.36 86.30 0.46 1.33 16 20 N -0.53 -7.18 4.86 -896.35 -4.35 -11.54 16 21 C 0.04 0.46 5.05 86.33 0.44 0.90 16 22 C -0.11 -0.78 6.09 30.65 0.19 -0.60 16 23 C -0.11 -0.78 5.16 30.67 0.16 -0.62 16 24 C -0.10 -1.06 2.69 -11.49 -0.03 -1.09 16 25 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 26 C 0.52 7.68 7.43 87.65 0.65 8.33 16 27 N -0.84 -5.08 8.78 -173.53 -1.52 -6.60 16 28 O -0.60 -15.46 16.82 -3.03 -0.05 -15.51 16 29 C 0.07 1.14 3.41 86.32 0.29 1.44 16 30 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.00 0.14 6.87 -2.39 -0.02 0.12 16 32 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.34 12.57 8.58 -89.69 -0.77 11.80 16 36 H 0.35 12.80 7.55 -89.70 -0.68 12.12 16 37 H 0.41 9.10 8.47 -92.71 -0.79 8.31 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.25 6.51 -2.39 -0.02 1.24 16 41 H 0.07 1.22 6.68 -2.38 -0.02 1.20 16 42 H 0.09 1.15 8.06 -2.39 -0.02 1.13 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.03 0.40 6.75 -2.39 -0.02 0.39 16 45 H 0.08 0.88 8.06 -2.38 -0.02 0.86 16 46 H 0.08 0.44 8.14 -2.39 -0.02 0.43 16 47 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.10 0.16 7.64 -2.39 -0.02 0.15 16 50 H 0.42 -0.41 8.30 -92.71 -0.77 -1.18 16 51 H 0.41 2.21 8.93 -92.71 -0.83 1.38 16 52 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 53 H 0.03 0.57 6.55 -2.38 -0.02 0.56 16 Total: -1.00 -76.46 417.88 -6.11 -82.57 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -2.87 Total: 36.40 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 4.54 Total: -0.46 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -9.70 Total: -125.55 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.10 Total: -38.59 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.46 -6.11 -82.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118131023.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.270 kcal (2) G-P(sol) polarization free energy of solvation -76.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds