Wall clock time and date at job start Sat Apr 11 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 C 1.52999 * 109.47719 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46683 * 305.00672 * 4 3 2 6 6 N 1.46504 * 109.46929 * 64.99738 * 4 3 2 7 7 C 1.34773 * 119.99792 * 275.00225 * 6 4 3 8 8 N 1.34780 * 119.99414 * 179.97438 * 7 6 4 9 9 O 1.21582 * 120.00724 * 0.02562 * 7 6 4 10 10 C 1.50689 * 109.47414 * 185.00217 * 4 3 2 11 11 O 1.21287 * 120.00177 * 240.00113 * 10 4 3 12 12 N 1.34772 * 120.00367 * 59.99716 * 10 4 3 13 13 C 1.46501 * 120.00156 * 179.97438 * 12 10 4 14 14 C 1.53001 * 109.46977 * 176.62657 * 13 12 10 15 15 N 1.46505 * 109.47070 * 54.63294 * 14 13 12 16 16 C 1.36933 * 119.99910 * 62.80702 * 15 14 13 17 17 H 1.08007 * 120.00276 * 354.23306 * 16 15 14 18 18 C 1.38816 * 120.00223 * 173.95539 * 16 15 14 19 19 N 1.31621 * 119.99548 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00167 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47619 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47251 * 120.00564 * 20 18 16 23 23 H 1.48506 * 109.47375 * 239.99999 * 20 18 16 24 24 C 1.53005 * 109.47149 * 174.63057 * 14 13 12 25 25 C 1.53001 * 109.47149 * 180.02562 * 24 14 13 26 26 C 1.52998 * 109.47398 * 300.00278 * 25 24 14 27 27 C 1.53005 * 109.47198 * 59.99752 * 26 25 24 28 28 C 1.52998 * 109.47398 * 294.63336 * 14 13 12 29 29 H 1.09001 * 109.46908 * 299.99543 * 1 2 3 30 30 H 1.08999 * 109.47069 * 60.00359 * 1 2 3 31 31 H 1.09004 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47428 * 240.00414 * 2 1 3 33 33 H 1.09000 * 109.47136 * 120.00192 * 2 1 3 34 34 H 1.08997 * 109.46971 * 59.99664 * 3 2 1 35 35 H 1.09004 * 109.46931 * 300.00507 * 3 2 1 36 36 H 0.96993 * 119.99929 * 95.00136 * 6 4 3 37 37 H 0.96994 * 120.00355 * 0.02562 * 8 7 6 38 38 H 0.97002 * 119.99695 * 180.02562 * 8 7 6 39 39 H 0.96999 * 119.99947 * 0.02562 * 12 10 4 40 40 H 1.08998 * 109.47196 * 56.63517 * 13 12 10 41 41 H 1.08991 * 109.47479 * 296.62556 * 13 12 10 42 42 H 0.97003 * 120.00136 * 242.80408 * 15 14 13 43 43 H 0.96993 * 119.99918 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.47189 * 299.99970 * 24 14 13 45 45 H 1.09004 * 109.46430 * 60.00301 * 24 14 13 46 46 H 1.08996 * 109.47050 * 179.97438 * 25 24 14 47 47 H 1.09002 * 109.46886 * 60.00076 * 25 24 14 48 48 H 1.09000 * 109.46869 * 300.00311 * 26 25 24 49 49 H 1.09000 * 109.47079 * 179.97438 * 26 25 24 50 50 H 1.08997 * 109.47399 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.46430 * 60.00099 * 27 26 25 52 52 H 1.09002 * 109.46937 * 299.99767 * 28 14 13 53 53 H 1.09000 * 109.47285 * 60.00305 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 7 4.0578 0.8590 -1.2528 7 6 4.1865 -0.4776 -1.3681 8 7 4.6348 -1.0144 -2.5202 9 8 3.8974 -1.1992 -0.4332 10 6 4.0723 2.8579 0.1232 11 8 4.7692 3.3326 -0.7486 12 7 3.7471 3.5964 1.2027 13 6 4.2360 4.9722 1.3234 14 6 3.6582 5.6095 2.5886 15 7 3.9709 4.7676 3.7461 16 6 5.2750 4.5558 4.1063 17 1 6.0747 4.9312 3.4850 18 6 5.5691 3.8636 5.2731 19 7 4.5945 3.4105 6.0328 20 14 7.3479 3.5741 5.7641 21 1 8.2467 4.1787 4.7482 22 1 7.6046 4.1996 7.0863 23 1 7.6069 2.1143 5.8486 24 6 4.2719 6.9970 2.7867 25 6 3.6946 7.6341 4.0523 26 6 2.1766 7.7632 3.9115 27 6 1.5629 6.3757 3.7135 28 6 2.1403 5.7387 2.4472 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 4.2881 1.4346 -1.9987 37 1 4.8652 -0.4388 -3.2662 38 1 4.7271 -1.9764 -2.6034 39 1 3.1901 3.2167 1.9001 40 1 3.9228 5.5468 0.4517 41 1 5.3242 4.9672 1.3835 42 1 3.2543 4.3601 4.2573 43 1 4.8000 2.9265 6.8479 44 1 5.3533 6.9050 2.8875 45 1 4.0392 7.6234 1.9255 46 1 4.1322 8.6224 4.1936 47 1 3.9277 7.0075 4.9132 48 1 1.9436 8.3898 3.0505 49 1 1.7654 8.2167 4.8134 50 1 0.4814 6.4676 3.6137 51 1 1.7961 5.7492 4.5745 52 1 1.9076 6.3652 1.5861 53 1 1.7031 4.7502 2.3063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120068736.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:39 Heat of formation + Delta-G solvation = -106.771661 kcal Electronic energy + Delta-G solvation = -32026.943331 eV Core-core repulsion = 27931.643857 eV Total energy + Delta-G solvation = -4095.299474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.63068 -40.62010 -39.72033 -36.77862 -35.92559 -35.13798 -34.89655 -33.80543 -32.84582 -31.52129 -30.62983 -29.73776 -26.88822 -25.69530 -25.31644 -23.42954 -22.37944 -22.06867 -21.69825 -21.19598 -19.85598 -19.50302 -19.02431 -18.56091 -17.44557 -17.10642 -16.99488 -16.60989 -16.07423 -15.91151 -15.81207 -15.58777 -15.34498 -15.22968 -14.92646 -14.77830 -14.47305 -14.28085 -14.17402 -13.67624 -13.38515 -13.33448 -13.22665 -12.89000 -12.84225 -12.67309 -12.57025 -12.52456 -12.45297 -12.04348 -12.01627 -11.85008 -11.65882 -11.55037 -11.33698 -11.29507 -11.06814 -10.93023 -10.67914 -10.67405 -10.59913 -10.05622 -9.89563 -8.88594 -7.86926 -5.10563 1.42963 1.47442 1.52259 1.56105 1.70789 2.18097 2.43868 2.59460 3.46501 3.54797 3.68652 3.84640 3.91891 3.96614 4.03317 4.06277 4.17019 4.25893 4.37401 4.42974 4.51705 4.68972 4.70246 4.75396 4.78985 4.80411 4.85320 4.91975 4.93977 4.99398 5.00691 5.10750 5.21023 5.25681 5.27421 5.29194 5.42655 5.45895 5.52455 5.54427 5.54547 5.59040 5.63915 5.70950 5.84327 5.87073 6.05502 6.36523 6.58799 7.05757 7.20128 7.45641 7.66065 8.19469 8.44327 9.35612 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003760 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.882392 B = 7444.790372 C = 8620.473982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.115 4.115 4 C 0.152 3.848 5 H 0.093 0.907 6 N -0.720 5.720 7 C 0.702 3.298 8 N -0.847 5.847 9 O -0.629 6.629 10 C 0.510 3.490 11 O -0.578 6.578 12 N -0.689 5.689 13 C 0.122 3.878 14 C 0.188 3.812 15 N -0.709 5.709 16 C -0.203 4.203 17 H 0.063 0.937 18 C -0.062 4.062 19 N -0.958 5.958 20 Si 0.941 3.059 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.304 1.304 24 C -0.113 4.113 25 C -0.107 4.107 26 C -0.107 4.107 27 C -0.113 4.113 28 C -0.107 4.107 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.411 0.589 37 H 0.412 0.588 38 H 0.422 0.578 39 H 0.407 0.593 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.377 0.623 43 H 0.245 0.755 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.039 0.961 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.074 0.926 51 H 0.042 0.958 52 H 0.086 0.914 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 0.638 -17.160 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.154 4.154 4 C 0.042 3.958 5 H 0.111 0.889 6 N -0.377 5.377 7 C 0.400 3.600 8 N -0.417 5.417 9 O -0.510 6.510 10 C 0.295 3.705 11 O -0.459 6.459 12 N -0.338 5.338 13 C -0.004 4.004 14 C 0.098 3.902 15 N -0.350 5.350 16 C -0.336 4.336 17 H 0.081 0.919 18 C -0.255 4.255 19 N -0.610 5.610 20 Si 0.774 3.226 21 H -0.202 1.202 22 H -0.226 1.226 23 H -0.232 1.232 24 C -0.153 4.153 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.151 4.151 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.249 0.751 37 H 0.243 0.757 38 H 0.255 0.745 39 H 0.244 0.756 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.211 0.789 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.093 0.907 51 H 0.060 0.940 52 H 0.104 0.896 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.788 0.565 -16.893 19.051 hybrid contribution 1.518 -0.681 0.764 1.831 sum -7.270 -0.117 -16.130 17.692 Atomic orbital electron populations 1.21766 0.94697 1.01783 1.02260 1.21445 0.96130 0.95205 1.01862 1.21968 0.90863 0.98683 1.03924 1.20561 0.96328 0.90408 0.88548 0.88949 1.44633 1.71155 1.05441 1.16516 1.16040 0.78010 0.82064 0.83876 1.42742 1.72214 1.12365 1.14334 1.90975 1.58677 1.60931 1.40386 1.20699 0.79997 0.87798 0.81984 1.90625 1.39867 1.73475 1.41923 1.45697 1.51977 1.14465 1.21694 1.21788 0.97773 0.81780 0.99087 1.20056 0.94376 0.90087 0.85705 1.42501 1.03997 1.56694 1.31793 1.19220 0.85678 1.26442 1.02222 0.91940 1.25121 0.98783 1.03293 0.98316 1.69744 1.30695 1.44626 1.15927 0.85540 0.83021 0.76497 0.77537 1.20164 1.22611 1.23177 1.21772 0.99186 0.96238 0.98063 1.21303 0.96228 0.98986 0.97939 1.21447 0.94494 0.96947 1.01594 1.21449 0.99648 0.96421 0.97563 1.21675 0.92869 1.01223 0.98699 0.92268 0.91954 0.92807 0.92654 0.93547 0.89668 0.89960 0.75128 0.75713 0.74471 0.75591 0.90823 0.94889 0.78915 0.94560 0.94397 0.90735 0.92619 0.94218 0.90664 0.92508 0.90719 0.93962 0.89585 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.91 71.98 0.71 -2.12 16 2 C -0.11 -2.62 4.54 30.59 0.14 -2.48 16 3 C -0.12 -2.59 4.83 30.59 0.15 -2.44 16 4 C 0.15 4.17 2.67 44.24 0.12 4.29 16 5 H 0.09 3.03 7.58 -2.39 -0.02 3.02 16 6 N -0.72 -17.36 4.91 -461.43 -2.27 -19.63 16 7 C 0.70 17.63 7.41 179.05 1.33 18.95 16 8 N -0.85 -12.75 8.88 -184.75 -1.64 -14.39 16 9 O -0.63 -21.06 14.31 -3.97 -0.06 -21.12 16 10 C 0.51 15.95 7.22 87.65 0.63 16.59 16 11 O -0.58 -20.59 15.84 -3.05 -0.05 -20.64 16 12 N -0.69 -21.56 4.95 -463.08 -2.29 -23.85 16 13 C 0.12 4.00 4.37 86.38 0.38 4.38 16 14 C 0.19 6.11 0.41 3.60 0.00 6.12 16 15 N -0.71 -29.89 3.40 -303.32 -1.03 -30.92 16 16 C -0.20 -10.19 8.70 84.04 0.73 -9.46 16 17 H 0.06 3.20 6.77 -2.91 -0.02 3.18 16 18 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 19 N -0.96 -55.23 13.07 21.65 0.28 -54.94 16 20 Si 0.94 46.13 29.55 68.60 2.03 48.16 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 23 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 24 C -0.11 -3.59 4.52 30.60 0.14 -3.45 16 25 C -0.11 -3.39 5.77 30.59 0.18 -3.21 16 26 C -0.11 -2.75 5.92 30.60 0.18 -2.57 16 27 C -0.11 -3.01 5.75 30.61 0.18 -2.83 16 28 C -0.11 -2.75 4.65 30.61 0.14 -2.61 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.05 1.44 5.64 -2.39 -0.01 1.42 16 33 H 0.05 1.34 7.84 -2.39 -0.02 1.33 16 34 H 0.08 1.80 7.43 -2.39 -0.02 1.78 16 35 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.41 8.71 7.80 -92.71 -0.72 7.99 16 37 H 0.41 3.68 8.84 -92.71 -0.82 2.86 16 38 H 0.42 5.29 8.93 -92.71 -0.83 4.46 16 39 H 0.41 12.64 6.75 -92.71 -0.63 12.02 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.03 1.29 7.50 -2.39 -0.02 1.28 16 42 H 0.38 17.32 6.63 -92.71 -0.61 16.70 16 43 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 44 H 0.04 1.38 7.24 -2.39 -0.02 1.37 16 45 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.04 1.61 7.60 -2.39 -0.02 1.59 16 48 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.04 1.41 6.92 -2.38 -0.02 1.40 16 52 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.06 1.59 7.28 -2.39 -0.02 1.57 16 Total: -1.00 -67.97 407.02 -2.21 -70.18 By element: Atomic # 1 Polarization: 53.59 SS G_CDS: -2.65 Total: 50.94 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 5.47 Total: 16.22 kcal Atomic # 7 Polarization: -136.79 SS G_CDS: -6.95 Total: -143.73 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.11 Total: -41.76 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -67.97 -2.21 -70.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120068736.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.592 kcal (2) G-P(sol) polarization free energy of solvation -67.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds