Wall clock time and date at job start Sat Apr 11 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47278 * 120.00113 * 2 1 3 5 5 N 1.46901 * 109.47171 * 64.99526 * 4 2 1 6 6 C 1.47908 * 110.99547 * 69.87940 * 5 4 2 7 7 C 1.53986 * 107.05367 * 145.84378 * 6 5 4 8 8 C 1.54585 * 105.14474 * 358.77279 * 7 6 5 9 9 H 1.09000 * 110.72814 * 96.57732 * 8 7 6 10 10 C 1.50705 * 110.72598 * 219.68877 * 8 7 6 11 11 O 1.21280 * 120.00464 * 118.54567 * 10 8 7 12 12 N 1.34780 * 119.99845 * 298.54000 * 10 8 7 13 13 C 1.46495 * 120.00045 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47056 * 180.02562 * 13 12 10 15 15 N 1.46905 * 109.47234 * 180.02562 * 14 13 12 16 16 C 1.46902 * 110.99800 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46577 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00224 * 359.72334 * 17 16 15 19 19 N 1.34777 * 119.99766 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99970 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99992 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00025 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99899 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00157 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47057 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47025 * 119.99856 * 24 22 20 27 27 H 1.48492 * 109.46854 * 240.00012 * 24 22 20 28 28 C 1.48531 * 110.99657 * 187.27099 * 5 4 2 29 29 H 1.09000 * 109.46953 * 299.99624 * 1 2 3 30 30 H 1.08992 * 109.46769 * 60.00136 * 1 2 3 31 31 H 1.09004 * 109.46658 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47289 * 239.99950 * 2 1 3 33 33 H 1.08998 * 109.47267 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46895 * 300.00288 * 3 2 1 35 35 H 1.09000 * 109.47024 * 59.99788 * 3 2 1 36 36 H 1.09007 * 109.46553 * 304.99941 * 4 2 1 37 37 H 1.08998 * 109.47250 * 185.00295 * 4 2 1 38 38 H 1.08995 * 109.91260 * 26.48605 * 6 5 4 39 39 H 1.09002 * 110.07636 * 265.29023 * 6 5 4 40 40 H 1.09004 * 110.30557 * 239.85039 * 7 6 5 41 41 H 1.09000 * 110.39210 * 117.73430 * 7 6 5 42 42 H 0.97006 * 119.99614 * 0.02562 * 12 10 8 43 43 H 1.09001 * 109.46675 * 60.00781 * 13 12 10 44 44 H 1.08989 * 109.47696 * 300.00448 * 13 12 10 45 45 H 1.08993 * 109.47319 * 60.00283 * 14 13 12 46 46 H 1.09002 * 109.47089 * 300.00338 * 14 13 12 47 47 H 1.00891 * 110.99988 * 303.95285 * 15 14 13 48 48 H 1.09000 * 109.47263 * 60.00269 * 16 15 14 49 49 H 1.09001 * 109.47582 * 299.99548 * 16 15 14 50 50 H 0.96999 * 120.00043 * 0.02562 * 19 17 16 51 51 H 0.97005 * 120.00019 * 180.02562 * 23 22 20 52 52 H 1.09000 * 110.66713 * 81.85562 * 28 5 4 53 53 H 1.08994 * 110.67185 * 318.71781 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 1.6514 -2.1367 1.1905 6 6 2.4066 -2.8504 0.1379 7 6 2.6432 -4.2848 0.6456 8 6 2.0062 -4.3250 2.0536 9 1 0.9978 -4.7363 2.0091 10 6 2.8632 -5.1208 3.0041 11 8 3.3372 -4.5875 3.9848 12 7 3.1028 -6.4253 2.7644 13 6 3.9363 -7.1987 3.6880 14 6 4.0493 -8.6403 3.1879 15 7 4.8846 -9.4161 4.1144 16 6 5.0151 -10.8087 3.6653 17 6 5.8762 -11.5717 4.6388 18 8 6.3400 -11.0093 5.6082 19 7 6.1350 -12.8777 4.4294 20 6 6.9187 -13.5717 5.3147 21 1 7.3284 -13.0719 6.1800 22 6 7.1860 -14.9180 5.0985 23 7 6.6879 -15.5259 4.0453 24 14 8.2533 -15.8639 6.3050 25 1 8.6875 -14.9572 7.3980 26 1 7.4741 -16.9914 6.8767 27 1 9.4470 -16.3946 5.5992 28 6 1.9757 -2.8310 2.4629 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1264 -0.6443 1.2952 38 1 3.3621 -2.3550 -0.0341 39 1 1.8291 -2.8740 -0.7863 40 1 3.7114 -4.4928 0.7075 41 1 2.1556 -5.0054 -0.0110 42 1 2.7239 -6.8518 1.9798 43 1 3.4826 -7.1922 4.6791 44 1 4.9299 -6.7538 3.7404 45 1 4.5031 -8.6465 2.1969 46 1 3.0557 -9.0855 3.1352 47 1 5.7903 -8.9869 4.2305 48 1 5.4758 -10.8303 2.6777 49 1 4.0281 -11.2686 3.6161 50 1 5.7673 -13.3264 3.6520 51 1 6.8742 -16.4659 3.8946 52 1 1.1999 -2.6519 3.2074 53 1 2.9494 -2.5145 2.8366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129340594.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:05 Heat of formation + Delta-G solvation = -109.172059 kcal Electronic energy + Delta-G solvation = -28467.059517 eV Core-core repulsion = 24371.655953 eV Total energy + Delta-G solvation = -4095.403563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.31803 -40.17181 -39.53121 -37.49575 -36.48764 -36.00428 -35.23367 -33.27548 -32.52579 -30.54630 -29.95385 -27.92450 -27.76541 -26.49794 -25.50710 -23.55481 -22.92255 -22.31674 -21.16133 -21.09999 -20.38183 -19.92110 -18.44360 -17.72126 -17.34215 -17.23085 -17.06652 -16.58523 -16.39754 -16.13300 -15.85089 -15.55228 -15.34609 -15.10534 -14.82479 -14.74969 -14.56796 -14.23883 -14.11007 -13.96043 -13.57908 -13.52749 -13.31915 -13.14479 -12.94373 -12.83520 -12.65308 -12.60406 -12.50826 -12.43358 -12.40231 -12.20734 -12.11820 -11.83216 -11.70246 -11.61516 -11.51882 -11.39231 -10.89786 -10.36905 -10.16578 -10.01628 -9.43367 -9.38500 -8.47364 -5.95805 1.36449 1.42223 1.56077 1.56660 1.97093 2.05006 2.30247 2.91029 3.09613 3.20263 3.43535 3.53893 3.60021 3.82332 3.92494 3.96080 4.08731 4.10509 4.24160 4.28082 4.31855 4.32336 4.45305 4.46216 4.50855 4.57152 4.61774 4.69447 4.74577 4.79587 4.83701 4.86807 4.89702 4.94616 4.94731 5.04452 5.07634 5.12563 5.19869 5.28806 5.35160 5.41200 5.46296 5.53888 5.84590 5.85896 6.03179 6.07117 6.31675 6.50967 6.60010 7.12700 7.20789 7.56012 8.11780 8.70148 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.045497 B = 0.001264 C = 0.001251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.279290 B =22144.365245 C =22378.463576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.147 4.147 4 C 0.050 3.950 5 N -0.514 5.514 6 C 0.035 3.965 7 C -0.116 4.116 8 C -0.103 4.103 9 H 0.133 0.867 10 C 0.518 3.482 11 O -0.587 6.587 12 N -0.710 5.710 13 C 0.127 3.873 14 C 0.059 3.941 15 N -0.687 5.687 16 C 0.069 3.931 17 C 0.434 3.566 18 O -0.626 6.626 19 N -0.571 5.571 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.270 1.270 28 C 0.055 3.945 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.042 0.958 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.419 0.581 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.345 0.655 48 H 0.074 0.926 49 H 0.110 0.890 50 H 0.398 0.602 51 H 0.278 0.722 52 H 0.083 0.917 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.437 26.926 -16.829 34.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C -0.205 4.205 4 C -0.079 4.079 5 N -0.237 5.237 6 C -0.093 4.093 7 C -0.154 4.154 8 C -0.125 4.125 9 H 0.151 0.849 10 C 0.305 3.695 11 O -0.467 6.467 12 N -0.363 5.363 13 C 0.002 3.998 14 C -0.070 4.070 15 N -0.320 5.320 16 C -0.063 4.063 17 C 0.222 3.778 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.074 4.074 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.256 0.744 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.164 0.836 48 H 0.091 0.909 49 H 0.128 0.872 50 H 0.232 0.768 51 H 0.087 0.913 52 H 0.101 0.899 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.851 27.323 -15.245 34.634 hybrid contribution 1.926 -0.850 -0.259 2.121 sum -12.926 26.473 -15.504 33.291 Atomic orbital electron populations 1.21685 0.94333 1.02106 1.01077 1.21050 0.96833 0.95697 0.96941 1.21825 1.00813 0.95574 1.02302 1.22400 0.97582 0.88416 0.99455 1.64800 1.53428 1.02200 1.03299 1.22946 0.96831 0.93139 0.96394 1.22439 1.01035 0.98208 0.93710 1.22193 1.00761 0.94972 0.94574 0.84882 1.20980 0.80426 0.82189 0.85858 1.90721 1.53350 1.71122 1.31525 1.45726 1.52161 1.09837 1.28546 1.21040 0.94808 0.90643 0.93273 1.22070 0.99393 0.91480 0.94036 1.59895 1.21017 1.01281 1.49808 1.21524 1.00365 0.89207 0.95254 1.20960 0.85355 0.82827 0.88675 1.90504 1.57318 1.69543 1.33909 1.41911 1.45503 1.08663 1.24792 1.19698 1.27523 0.93164 1.06104 0.90505 1.25995 0.98987 0.97037 0.98980 1.69667 1.45529 1.12572 1.28198 0.84899 0.77942 0.77825 0.77853 1.19956 1.19571 1.19528 1.22950 1.00021 0.91632 0.92755 0.93414 0.92750 0.92172 0.91161 0.92925 0.91754 0.92638 0.91085 0.95255 0.93986 0.88564 0.91614 0.87155 0.74372 0.92525 0.92823 0.92391 0.88750 0.83628 0.90869 0.87248 0.76829 0.91264 0.89864 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.08 71.98 0.65 -0.70 16 2 C -0.09 -0.87 2.92 -10.79 -0.03 -0.90 16 3 C -0.15 -1.29 9.19 71.98 0.66 -0.63 16 4 C 0.05 0.64 4.15 86.30 0.36 0.99 16 5 N -0.51 -6.71 4.72 -883.00 -4.17 -10.88 16 6 C 0.03 0.35 5.72 86.44 0.49 0.85 16 7 C -0.12 -1.01 6.44 31.47 0.20 -0.81 16 8 C -0.10 -1.32 3.45 -10.33 -0.04 -1.36 16 9 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 10 C 0.52 10.31 7.03 87.66 0.62 10.93 16 11 O -0.59 -17.82 15.78 -3.03 -0.05 -17.87 16 12 N -0.71 -11.05 5.50 -463.07 -2.55 -13.60 16 13 C 0.13 2.71 5.93 86.38 0.51 3.22 16 14 C 0.06 1.15 5.80 86.30 0.50 1.65 16 15 N -0.69 -20.49 6.13 -517.91 -3.17 -23.67 16 16 C 0.07 2.20 6.17 85.56 0.53 2.72 16 17 C 0.43 20.37 7.82 87.66 0.69 21.06 16 18 O -0.63 -34.91 15.78 -3.05 -0.05 -34.96 16 19 N -0.57 -28.89 5.29 -306.98 -1.62 -30.52 16 20 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 23 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 24 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 C 0.05 0.89 5.57 86.65 0.48 1.38 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.70 7.75 -2.39 -0.02 0.68 16 32 H 0.07 0.69 7.37 -2.39 -0.02 0.68 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.07 0.96 8.11 -2.38 -0.02 0.95 16 37 H 0.03 0.41 7.82 -2.39 -0.02 0.40 16 38 H 0.04 0.47 7.57 -2.39 -0.02 0.46 16 39 H 0.10 0.74 8.12 -2.39 -0.02 0.72 16 40 H 0.07 0.70 7.84 -2.38 -0.02 0.68 16 41 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.42 3.41 8.46 -92.70 -0.78 2.63 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.35 11.10 8.43 -89.70 -0.76 10.35 16 48 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 50 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 51 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 52 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 53 H 0.03 0.74 7.40 -2.39 -0.02 0.73 16 Total: -1.00 -74.21 427.81 -3.75 -77.96 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -1.36 Total: 37.21 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 6.91 Total: 20.13 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -11.23 Total: -127.29 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -0.10 Total: -52.83 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.21 -3.75 -77.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129340594.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.209 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds