Wall clock time and date at job start Sat Apr 11 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 C 1.52992 * 109.47419 * 120.00231 * 2 1 3 5 5 N 1.46909 * 109.47101 * 65.33390 * 4 2 1 6 6 C 1.47446 * 110.99912 * 75.54970 * 5 4 2 7 7 C 1.54318 * 107.22946 * 123.26146 * 6 5 4 8 8 C 1.55143 * 103.02091 * 22.28080 * 7 6 5 9 9 C 1.47842 * 111.00148 * 196.39821 * 5 4 2 10 10 H 1.09007 * 110.37440 * 332.46352 * 9 5 4 11 11 C 1.50693 * 110.37783 * 94.80258 * 9 5 4 12 12 O 1.21284 * 119.99769 * 0.02562 * 11 9 5 13 13 N 1.34773 * 120.00534 * 179.97438 * 11 9 5 14 14 C 1.46500 * 120.00385 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47218 * 180.02562 * 14 13 11 16 16 N 1.46892 * 109.47185 * 180.02562 * 15 14 13 17 17 C 1.46900 * 111.00273 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47308 * 179.97438 * 17 16 15 19 19 O 1.21290 * 120.00063 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99948 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00087 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99871 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00165 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00213 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00164 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47332 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47315 * 119.99705 * 25 23 21 28 28 H 1.48499 * 109.47471 * 239.99726 * 25 23 21 29 29 H 1.09004 * 109.46620 * 299.99691 * 1 2 3 30 30 H 1.09003 * 109.47491 * 59.99566 * 1 2 3 31 31 H 1.08998 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47268 * 240.00695 * 2 1 3 33 33 H 1.09003 * 109.47581 * 304.88408 * 3 2 1 34 34 H 1.09004 * 109.46927 * 64.88713 * 3 2 1 35 35 H 1.09004 * 109.47198 * 184.88272 * 3 2 1 36 36 H 1.09001 * 109.47596 * 185.33014 * 4 2 1 37 37 H 1.08997 * 109.47274 * 305.33563 * 4 2 1 38 38 H 1.08997 * 109.88707 * 242.66241 * 6 5 4 39 39 H 1.08996 * 109.88552 * 3.85774 * 6 5 4 40 40 H 1.09000 * 110.70536 * 140.66407 * 7 6 5 41 41 H 1.09005 * 110.70830 * 263.72485 * 7 6 5 42 42 H 1.09003 * 110.98589 * 82.43770 * 8 7 6 43 43 H 1.08997 * 110.99232 * 206.21484 * 8 7 6 44 44 H 0.97004 * 119.99416 * 0.02562 * 13 11 9 45 45 H 1.08995 * 109.47098 * 299.99960 * 14 13 11 46 46 H 1.09001 * 109.47012 * 59.99985 * 14 13 11 47 47 H 1.09003 * 109.46759 * 299.99628 * 15 14 13 48 48 H 1.08997 * 109.47215 * 59.99236 * 15 14 13 49 49 H 1.00900 * 111.00217 * 303.95095 * 16 15 14 50 50 H 1.09004 * 109.46448 * 299.99877 * 17 16 15 51 51 H 1.08997 * 109.47250 * 59.99148 * 17 16 15 52 52 H 0.96999 * 119.99934 * 0.02562 * 20 18 17 53 53 H 0.96994 * 120.00519 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.6583 -2.1385 1.1864 6 6 2.5101 -2.8734 0.2333 7 6 3.1650 -4.0362 1.0082 8 6 2.2091 -4.2352 2.2138 9 6 1.7766 -2.7783 2.5140 10 1 2.5347 -2.2731 3.1125 11 6 0.4480 -2.7613 3.2249 12 8 -0.5203 -2.2656 2.6888 13 7 0.3356 -3.2979 4.4561 14 6 -0.9562 -3.2819 5.1470 15 6 -0.8103 -3.9480 6.5167 16 7 -2.1056 -3.9325 7.2092 17 6 -2.0035 -4.5648 8.5312 18 6 -3.3484 -4.5296 9.2102 19 8 -4.2984 -4.0268 8.6483 20 7 -3.4955 -5.0569 10.4418 21 6 -4.7189 -5.0244 11.0597 22 1 -5.5648 -4.5767 10.5594 23 6 -4.8704 -5.5675 12.3296 24 7 -3.8413 -6.1127 12.9383 25 14 -6.5375 -5.5239 13.1713 26 1 -7.5243 -4.8610 12.2812 27 1 -6.9832 -6.9109 13.4590 28 1 -6.4303 -4.7646 14.4430 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6070 1.9810 -0.8430 34 1 1.7499 1.9304 0.9306 35 1 3.1265 1.4437 -0.0875 36 1 3.1258 -0.6393 1.2982 37 1 1.6008 -0.2656 2.1366 38 1 1.9014 -3.2668 -0.5809 39 1 3.2801 -2.2114 -0.1626 40 1 3.2028 -4.9358 0.3938 41 1 4.1638 -3.7599 1.3463 42 1 1.3515 -4.8475 1.9351 43 1 2.7368 -4.6693 3.0630 44 1 1.1100 -3.6947 4.8848 45 1 -1.2854 -2.2511 5.2780 46 1 -1.6919 -3.8258 4.5546 47 1 -0.4809 -4.9788 6.3861 48 1 -0.0746 -3.4038 7.1089 49 1 -2.4638 -2.9923 7.2852 50 1 -1.6817 -5.5997 8.4150 51 1 -1.2765 -4.0243 9.1374 52 1 -2.7356 -5.4587 10.8913 53 1 -3.9471 -6.4922 13.8246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130710802.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:20 Heat of formation + Delta-G solvation = -103.523533 kcal Electronic energy + Delta-G solvation = -29131.765867 eV Core-core repulsion = 25036.607242 eV Total energy + Delta-G solvation = -4095.158625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24563 -40.17298 -39.33641 -37.39311 -36.55225 -35.98554 -35.13965 -33.27294 -32.03874 -31.32895 -29.77262 -27.94816 -27.58645 -26.36400 -25.61622 -23.60272 -22.86248 -22.38405 -21.10085 -20.89686 -20.46735 -19.92157 -18.41744 -17.77182 -17.50371 -17.16676 -16.86868 -16.55159 -16.25341 -15.96851 -15.79330 -15.64256 -15.30192 -15.19085 -14.90905 -14.69480 -14.26087 -14.22511 -13.94220 -13.89363 -13.74268 -13.52831 -13.31277 -13.14854 -12.94671 -12.78113 -12.73293 -12.57283 -12.50471 -12.41046 -12.35173 -12.11817 -12.07432 -11.80517 -11.67796 -11.56435 -11.51924 -11.45718 -10.75959 -10.36857 -10.07458 -10.01665 -9.38216 -9.21288 -8.47317 -5.95868 1.36516 1.42189 1.56168 1.71429 1.96509 2.04942 2.30218 2.91384 3.12954 3.20141 3.51607 3.61267 3.65980 3.87346 3.94341 3.97568 4.08517 4.12938 4.14659 4.24389 4.30299 4.32049 4.46772 4.50771 4.55219 4.56625 4.62048 4.67949 4.75036 4.82879 4.84011 4.91525 4.93495 4.97447 4.98352 5.06137 5.10167 5.12524 5.26306 5.32896 5.40952 5.42720 5.44999 5.55301 5.85119 5.94884 6.07436 6.14838 6.31688 6.59904 6.65081 7.12638 7.36787 7.55918 8.11769 8.70190 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.001500 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.048061 B =18664.249745 C =19418.191144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.144 4.144 4 C 0.063 3.937 5 N -0.530 5.530 6 C 0.042 3.958 7 C -0.133 4.133 8 C -0.114 4.114 9 C 0.058 3.942 10 H 0.100 0.900 11 C 0.513 3.487 12 O -0.564 6.564 13 N -0.716 5.716 14 C 0.132 3.868 15 C 0.060 3.940 16 N -0.687 5.687 17 C 0.069 3.931 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.032 0.968 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.416 0.584 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.094 0.906 48 H 0.057 0.943 49 H 0.345 0.655 50 H 0.110 0.890 51 H 0.073 0.927 52 H 0.398 0.602 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.674 6.089 -22.798 34.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.104 4.104 3 C -0.201 4.201 4 C -0.065 4.065 5 N -0.255 5.255 6 C -0.085 4.085 7 C -0.171 4.171 8 C -0.153 4.153 9 C -0.054 4.054 10 H 0.118 0.882 11 C 0.299 3.701 12 O -0.441 6.441 13 N -0.371 5.371 14 C 0.007 3.993 15 C -0.069 4.069 16 N -0.320 5.320 17 C -0.064 4.064 18 C 0.222 3.778 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.253 0.747 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.112 0.888 48 H 0.075 0.925 49 H 0.163 0.837 50 H 0.128 0.872 51 H 0.091 0.909 52 H 0.232 0.768 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.621 6.110 -23.846 33.432 hybrid contribution 0.542 0.434 1.772 1.903 sum 23.163 6.544 -22.075 32.660 Atomic orbital electron populations 1.21593 0.95809 1.01216 0.99973 1.21043 0.95579 0.96120 0.97619 1.21802 1.01376 0.95070 1.01900 1.22317 0.98079 0.87649 0.98409 1.62916 1.54288 1.02455 1.05806 1.22912 0.94750 0.95519 0.95348 1.22778 0.98873 0.99045 0.96405 1.22706 0.99744 0.92523 1.00293 1.22496 0.92767 0.98281 0.91816 0.88248 1.21047 0.91166 0.76995 0.80869 1.90706 1.41099 1.45746 1.66527 1.45721 1.12654 1.61329 1.17368 1.20965 0.85582 1.00095 0.92689 1.22063 0.89863 1.02231 0.92733 1.59911 1.26756 1.26106 1.19238 1.21525 0.92909 1.02348 0.89586 1.20953 0.91741 0.82729 0.82352 1.90506 1.43604 1.51005 1.66134 1.41914 1.11462 1.52608 1.14934 1.19702 0.89177 1.37916 0.99713 0.90493 1.26009 1.02656 0.95734 0.96702 1.69664 1.31642 1.38908 1.15736 0.84882 0.77300 0.78333 0.77878 1.20011 1.19557 1.19511 0.94901 0.93065 0.93542 0.90850 0.92106 0.93232 0.91575 0.92826 0.92910 0.91365 0.91170 0.89404 0.89455 0.91713 0.87254 0.74740 0.93108 0.92861 0.88755 0.92473 0.83669 0.87225 0.90898 0.76823 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.08 71.98 0.65 -1.99 16 2 C -0.08 -1.28 2.96 -10.80 -0.03 -1.31 16 3 C -0.14 -1.71 9.19 71.98 0.66 -1.04 16 4 C 0.06 0.96 3.97 86.30 0.34 1.31 16 5 N -0.53 -8.81 3.76 -865.00 -3.26 -12.07 16 6 C 0.04 0.48 6.23 86.65 0.54 1.02 16 7 C -0.13 -0.94 6.94 31.78 0.22 -0.72 16 8 C -0.11 -1.07 6.47 31.98 0.21 -0.86 16 9 C 0.06 0.82 2.75 44.64 0.12 0.95 16 10 H 0.10 0.99 7.81 -2.38 -0.02 0.97 16 11 C 0.51 11.17 7.19 87.66 0.63 11.80 16 12 O -0.56 -18.30 16.49 -3.04 -0.05 -18.35 16 13 N -0.72 -12.14 5.54 -463.07 -2.56 -14.71 16 14 C 0.13 2.98 5.93 86.38 0.51 3.49 16 15 C 0.06 1.22 5.80 86.31 0.50 1.72 16 16 N -0.69 -21.08 6.13 -517.95 -3.17 -24.25 16 17 C 0.07 2.23 6.17 85.56 0.53 2.76 16 18 C 0.43 20.61 7.82 87.66 0.69 21.30 16 19 O -0.63 -35.25 15.78 -3.06 -0.05 -35.30 16 20 N -0.57 -29.16 5.29 -306.99 -1.62 -30.79 16 21 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 25 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.19 7.76 -2.39 -0.02 1.17 16 32 H 0.07 1.02 7.46 -2.39 -0.02 1.00 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.60 7.78 -2.39 -0.02 0.58 16 37 H 0.05 1.00 7.99 -2.39 -0.02 0.98 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.62 7.20 -2.39 -0.02 0.60 16 40 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.06 0.87 8.05 -2.39 -0.02 0.85 16 43 H 0.11 0.43 8.14 -2.39 -0.02 0.42 16 44 H 0.42 3.85 8.47 -92.71 -0.79 3.07 16 45 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.34 11.41 8.43 -89.69 -0.76 10.66 16 50 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 51 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 53 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -76.86 429.04 -2.92 -79.77 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -1.36 Total: 39.51 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 6.85 Total: 19.95 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -10.33 Total: -130.65 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.10 Total: -53.65 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -76.86 -2.92 -79.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130710802.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.751 kcal (2) G-P(sol) polarization free energy of solvation -76.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds