Wall clock time and date at job start Sat Apr 11 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46799 * 2 1 4 4 N 1.46903 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.46903 * 111.00031 * 66.04733 * 4 3 2 6 6 C 1.46904 * 111.00115 * 190.00022 * 4 3 2 7 7 C 1.50696 * 109.46991 * 170.00255 * 6 4 3 8 8 O 1.21279 * 120.00231 * 0.02562 * 7 6 4 9 9 N 1.34849 * 119.99794 * 179.97438 * 7 6 4 10 10 C 1.47777 * 121.43348 * 359.44473 * 9 7 6 11 11 C 1.52884 * 109.35945 * 96.13609 * 10 9 7 12 12 C 1.50768 * 109.55722 * 69.27386 * 11 10 9 13 13 O 1.21271 * 120.26126 * 66.25668 * 12 11 10 14 14 N 1.36042 * 118.92961 * 245.98762 * 12 11 10 15 15 C 1.47612 * 116.97143 * 168.15129 * 14 12 11 16 16 C 1.53004 * 108.79536 * 238.84305 * 15 14 12 17 17 N 1.47746 * 109.11947 * 66.28257 * 16 15 14 18 18 C 1.36977 * 121.50468 * 100.04187 * 17 16 15 19 19 H 1.08004 * 120.00321 * 335.35584 * 18 17 16 20 20 C 1.38811 * 119.99708 * 155.35278 * 18 17 16 21 21 N 1.31620 * 120.00175 * 342.47952 * 20 18 17 22 22 Si 1.86801 * 119.99903 * 162.48186 * 20 18 17 23 23 H 1.48504 * 109.47098 * 94.46647 * 22 20 18 24 24 H 1.48499 * 109.46893 * 214.46464 * 22 20 18 25 25 H 1.48497 * 109.47163 * 334.46647 * 22 20 18 26 26 C 1.47814 * 116.74479 * 279.74389 * 17 16 15 27 27 C 1.47744 * 121.80912 * 179.97438 * 9 7 6 28 28 H 1.09003 * 109.47124 * 299.99874 * 1 2 3 29 29 H 1.08997 * 109.46878 * 60.00218 * 1 2 3 30 30 H 1.09005 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47124 * 240.00125 * 2 1 3 32 32 H 1.08997 * 109.46878 * 119.99782 * 2 1 3 33 33 H 1.09003 * 109.47180 * 60.00160 * 3 2 1 34 34 H 1.09003 * 109.47422 * 300.00238 * 3 2 1 35 35 H 1.08995 * 109.47289 * 183.95456 * 5 4 3 36 36 H 1.09005 * 109.46775 * 303.95682 * 5 4 3 37 37 H 1.09000 * 109.47081 * 63.95257 * 5 4 3 38 38 H 1.09002 * 109.47108 * 50.00048 * 6 4 3 39 39 H 1.09001 * 109.46902 * 289.99997 * 6 4 3 40 40 H 1.09052 * 109.51641 * 216.30278 * 10 9 7 41 41 H 1.09111 * 109.43846 * 336.16614 * 10 9 7 42 42 H 1.08966 * 109.71414 * 309.06302 * 11 10 9 43 43 H 1.09100 * 109.40608 * 189.08021 * 11 10 9 44 44 H 0.97109 * 121.57753 * 349.39990 * 14 12 11 45 45 H 1.08887 * 110.04623 * 358.98160 * 15 14 12 46 46 H 1.09102 * 109.45987 * 119.29971 * 15 14 12 47 47 H 1.09040 * 109.53258 * 186.16425 * 16 15 14 48 48 H 1.09014 * 109.56951 * 306.28734 * 16 15 14 49 49 H 0.96993 * 120.00079 * 180.02562 * 21 20 18 50 50 H 1.09143 * 109.25396 * 245.63250 * 26 17 16 51 51 H 1.08972 * 109.37191 * 5.31745 * 26 17 16 52 52 H 1.09032 * 109.34765 * 180.32497 * 27 9 7 53 53 H 1.09155 * 109.26672 * 60.72466 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0360 0.8856 -1.2524 6 6 4.0353 2.7932 0.2388 7 6 5.5215 2.7184 0.4767 8 8 6.0867 1.6457 0.4500 9 7 6.2231 3.8444 0.7183 10 6 5.5690 5.1693 0.7449 11 6 5.2358 5.5410 2.1899 12 6 6.5104 5.8125 2.9480 13 8 7.2025 6.7654 2.6585 14 7 6.8646 4.9763 3.9609 15 6 8.2342 5.1133 4.4943 16 6 8.9617 3.7769 4.3339 17 7 9.1453 3.4955 2.8952 18 6 10.3389 3.7321 2.2662 19 1 11.0227 4.4673 2.6642 20 6 10.6697 3.0268 1.1173 21 7 10.0315 1.9144 0.8212 22 14 12.0208 3.6564 -0.0087 23 1 13.3065 3.0047 0.3484 24 1 11.6790 3.3377 -1.4182 25 1 12.1509 5.1273 0.1487 26 6 7.9815 2.9410 2.1719 27 6 7.6809 3.8174 0.9573 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 5.1233 0.8323 -1.1974 36 1 3.6304 -0.1147 -1.4043 37 1 3.7452 1.5259 -2.0853 38 1 3.5485 3.2238 1.1138 39 1 3.8377 3.4189 -0.6316 40 1 6.2408 5.9158 0.3200 41 1 4.6507 5.1327 0.1568 42 1 4.6978 4.7214 2.6656 43 1 4.6128 6.4365 2.1994 44 1 6.2515 4.3067 4.3055 45 1 8.7705 5.8895 3.9507 46 1 8.1876 5.3767 5.5521 47 1 9.9353 3.8310 4.8217 48 1 8.3703 2.9823 4.7892 49 1 10.2629 1.4214 0.0186 50 1 8.2120 1.9259 1.8437 51 1 7.1193 2.9185 2.8379 52 1 8.0366 4.8326 1.1351 53 1 8.1824 3.4079 0.0786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131392758.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:28 Heat of formation + Delta-G solvation = -23.892967 kcal Electronic energy + Delta-G solvation = -32814.182338 eV Core-core repulsion = 28722.476754 eV Total energy + Delta-G solvation = -4091.705584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.96449 -38.99971 -37.32392 -36.03217 -35.32783 -33.79140 -33.25158 -31.39067 -30.52958 -29.71113 -28.12168 -27.04589 -26.39667 -24.42974 -23.77763 -23.17316 -21.78562 -20.80357 -20.38086 -19.79706 -18.44256 -17.10662 -16.68738 -16.50279 -15.96662 -15.81931 -15.63159 -15.17910 -14.87802 -14.66594 -14.38853 -14.16435 -13.98065 -13.52103 -13.38375 -13.33910 -12.95597 -12.82816 -12.69202 -12.60524 -12.19918 -12.09126 -12.01613 -11.83730 -11.71388 -11.63557 -11.31753 -11.24711 -11.18978 -11.03324 -10.78063 -10.69517 -10.58626 -10.46321 -10.00257 -9.88527 -9.56031 -9.38983 -9.10863 -8.79793 -8.35923 -8.27962 -8.10531 -6.60495 -5.56614 -3.13968 2.95405 3.14961 3.28811 3.42194 3.50225 3.52965 3.72917 3.96428 4.55291 4.70475 4.77422 4.84135 4.87781 5.03121 5.15896 5.20006 5.25536 5.29127 5.36269 5.38995 5.43665 5.47553 5.52778 5.53626 5.61266 5.63862 5.68028 5.83151 5.86793 5.98680 6.00660 6.09328 6.09823 6.15809 6.30392 6.37207 6.48469 6.57120 6.74772 6.90093 6.94426 6.97538 7.03692 7.06083 7.38785 7.82010 7.92349 7.96325 8.14434 8.45623 8.63785 8.78783 9.26143 9.89065 10.46684 11.37555 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.003936 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.455464 B = 7112.805404 C = 8438.417368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.056 3.944 4 N -0.523 5.523 5 C 0.017 3.983 6 C 0.038 3.962 7 C 0.509 3.491 8 O -0.499 6.499 9 N -0.620 5.620 10 C 0.117 3.883 11 C -0.160 4.160 12 C 0.525 3.475 13 O -0.542 6.542 14 N -0.723 5.723 15 C 0.085 3.915 16 C 0.127 3.873 17 N -0.590 5.590 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.884 5.884 22 Si 0.892 3.108 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.160 3.840 27 C 0.120 3.880 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.016 0.984 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.399 0.601 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.252 0.748 50 H 0.088 0.912 51 H 0.020 0.980 52 H 0.074 0.926 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.194 2.514 0.812 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.247 5.247 5 C -0.131 4.131 6 C -0.093 4.093 7 C 0.295 3.705 8 O -0.372 6.372 9 N -0.357 5.357 10 C -0.008 4.008 11 C -0.202 4.202 12 C 0.312 3.688 13 O -0.419 6.419 14 N -0.375 5.375 15 C -0.041 4.041 16 C -0.001 4.001 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.528 5.528 22 Si 0.722 3.278 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.034 3.966 27 C -0.002 4.002 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.034 0.966 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.233 0.767 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.051 0.949 49 H 0.063 0.937 50 H 0.106 0.894 51 H 0.039 0.961 52 H 0.092 0.908 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.148 2.115 0.807 18.288 hybrid contribution 0.056 0.668 -1.196 1.371 sum -18.092 2.783 -0.389 18.309 Atomic orbital electron populations 1.21738 0.95770 1.01699 1.01591 1.21540 0.95042 0.96374 1.03051 1.22190 0.87103 0.97463 1.00454 1.61635 1.06633 1.20126 1.36337 1.22616 1.03465 0.99025 0.87964 1.22045 0.94397 0.91010 1.01871 1.20217 0.88324 0.84057 0.77931 1.90751 1.70621 1.27318 1.48492 1.49076 1.10418 1.05108 1.71095 1.21673 0.98809 0.86282 0.94028 1.22218 0.96879 1.03470 0.97641 1.20573 0.86755 0.81854 0.79651 1.90678 1.55475 1.28921 1.66873 1.46456 1.15937 1.37510 1.37641 1.22569 0.82502 1.02163 0.96868 1.21439 0.97996 0.93000 0.87656 1.44528 1.09102 1.75204 1.02504 1.18998 0.95556 1.15859 1.07744 0.91665 1.24952 0.98378 0.95623 1.00550 1.69976 1.42637 1.13939 1.26243 0.86438 0.82112 0.78623 0.80659 1.21544 1.21673 1.20523 1.21346 0.86193 0.99284 0.89728 1.22528 0.74904 1.01467 1.01313 0.92715 0.93014 0.92583 0.91848 0.90906 0.90942 0.95156 0.88873 0.91393 0.96554 0.88557 0.92635 0.89492 0.90155 0.90164 0.88159 0.76653 0.88947 0.93212 0.91898 0.94881 0.93702 0.89408 0.96139 0.90807 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -1.11 5.86 -26.73 -0.16 -1.27 16 3 C 0.06 0.54 4.96 -3.82 -0.02 0.53 16 4 N -0.52 -6.81 4.50 -244.36 -1.10 -7.91 16 5 C 0.02 0.23 9.01 60.07 0.54 0.77 16 6 C 0.04 0.47 4.01 -4.98 -0.02 0.45 16 7 C 0.51 8.78 7.19 -10.95 -0.08 8.70 16 8 O -0.50 -10.95 13.38 5.56 0.07 -10.88 16 9 N -0.62 -10.61 2.62 -171.68 -0.45 -11.06 16 10 C 0.12 1.51 5.50 -3.40 -0.02 1.49 16 11 C -0.16 -1.88 6.08 -27.91 -0.17 -2.05 16 12 C 0.53 8.51 5.10 -10.38 -0.05 8.46 16 13 O -0.54 -10.98 16.03 5.57 0.09 -10.89 16 14 N -0.72 -11.06 3.72 -59.18 -0.22 -11.28 16 15 C 0.08 1.44 6.65 -3.43 -0.02 1.42 16 16 C 0.13 2.48 6.05 -3.36 -0.02 2.46 16 17 N -0.59 -14.28 2.70 -171.21 -0.46 -14.74 16 18 C -0.25 -6.81 9.22 -15.04 -0.14 -6.95 16 19 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 20 C 0.00 0.13 4.46 -17.43 -0.08 0.05 16 21 N -0.88 -25.71 10.07 55.49 0.56 -25.15 16 22 Si 0.89 22.10 29.59 -169.99 -5.03 17.07 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.16 3.76 3.62 -3.44 -0.01 3.75 16 27 C 0.12 2.66 4.05 -3.48 -0.01 2.64 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.60 6.47 -51.93 -0.34 0.26 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 34 H 0.03 0.28 8.12 -51.93 -0.42 -0.15 16 35 H 0.09 1.58 5.88 -51.93 -0.31 1.27 16 36 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 37 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.10 0.98 7.93 -51.93 -0.41 0.56 16 39 H 0.06 0.60 7.48 -51.93 -0.39 0.21 16 40 H 0.09 1.25 7.80 -51.90 -0.40 0.85 16 41 H 0.08 0.75 6.45 -51.87 -0.33 0.42 16 42 H 0.08 0.81 7.93 -51.95 -0.41 0.39 16 43 H 0.10 0.93 8.15 -51.87 -0.42 0.51 16 44 H 0.40 5.17 8.43 -40.78 -0.34 4.83 16 45 H 0.09 1.87 6.82 -51.99 -0.35 1.52 16 46 H 0.05 0.71 8.15 -51.87 -0.42 0.28 16 47 H 0.06 1.22 8.03 -51.91 -0.42 0.80 16 48 H 0.03 0.61 8.06 -51.92 -0.42 0.20 16 49 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.09 2.52 5.87 -51.85 -0.30 2.21 16 51 H 0.02 0.44 6.24 -51.94 -0.32 0.11 16 52 H 0.07 1.76 6.29 -51.91 -0.33 1.43 16 53 H 0.07 1.78 7.07 -51.84 -0.37 1.42 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -33.61 397.93 -9.55 -43.16 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -9.12 Total: 5.92 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 0.11 Total: 19.76 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -1.67 Total: -70.14 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.16 Total: -21.77 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.61 -9.55 -43.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131392758.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.268 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds