Wall clock time and date at job start Sat Apr 11 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46799 * 2 1 4 4 N 1.46903 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.46903 * 111.00031 * 66.04733 * 4 3 2 6 6 C 1.46904 * 111.00115 * 190.00022 * 4 3 2 7 7 C 1.50696 * 109.46991 * 170.00255 * 6 4 3 8 8 O 1.21279 * 120.00231 * 0.02562 * 7 6 4 9 9 N 1.34849 * 119.99794 * 179.97438 * 7 6 4 10 10 C 1.47777 * 121.43348 * 359.44473 * 9 7 6 11 11 C 1.52884 * 109.35945 * 96.13609 * 10 9 7 12 12 C 1.50768 * 109.55722 * 69.27386 * 11 10 9 13 13 O 1.21271 * 120.26126 * 66.25668 * 12 11 10 14 14 N 1.36042 * 118.92961 * 245.98762 * 12 11 10 15 15 C 1.47612 * 116.97143 * 168.15129 * 14 12 11 16 16 C 1.53004 * 108.79536 * 238.84305 * 15 14 12 17 17 N 1.47746 * 109.11947 * 66.28257 * 16 15 14 18 18 C 1.36977 * 121.50468 * 100.04187 * 17 16 15 19 19 H 1.08004 * 120.00321 * 335.35584 * 18 17 16 20 20 C 1.38811 * 119.99708 * 155.35278 * 18 17 16 21 21 N 1.31620 * 120.00175 * 342.47952 * 20 18 17 22 22 Si 1.86801 * 119.99903 * 162.48186 * 20 18 17 23 23 H 1.48504 * 109.47098 * 94.46647 * 22 20 18 24 24 H 1.48499 * 109.46893 * 214.46464 * 22 20 18 25 25 H 1.48497 * 109.47163 * 334.46647 * 22 20 18 26 26 C 1.47814 * 116.74479 * 279.74389 * 17 16 15 27 27 C 1.47744 * 121.80912 * 179.97438 * 9 7 6 28 28 H 1.09003 * 109.47124 * 299.99874 * 1 2 3 29 29 H 1.08997 * 109.46878 * 60.00218 * 1 2 3 30 30 H 1.09005 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47124 * 240.00125 * 2 1 3 32 32 H 1.08997 * 109.46878 * 119.99782 * 2 1 3 33 33 H 1.09003 * 109.47180 * 60.00160 * 3 2 1 34 34 H 1.09003 * 109.47422 * 300.00238 * 3 2 1 35 35 H 1.08995 * 109.47289 * 183.95456 * 5 4 3 36 36 H 1.09005 * 109.46775 * 303.95682 * 5 4 3 37 37 H 1.09000 * 109.47081 * 63.95257 * 5 4 3 38 38 H 1.09002 * 109.47108 * 50.00048 * 6 4 3 39 39 H 1.09001 * 109.46902 * 289.99997 * 6 4 3 40 40 H 1.09052 * 109.51641 * 216.30278 * 10 9 7 41 41 H 1.09111 * 109.43846 * 336.16614 * 10 9 7 42 42 H 1.08966 * 109.71414 * 309.06302 * 11 10 9 43 43 H 1.09100 * 109.40608 * 189.08021 * 11 10 9 44 44 H 0.97109 * 121.57753 * 349.39990 * 14 12 11 45 45 H 1.08887 * 110.04623 * 358.98160 * 15 14 12 46 46 H 1.09102 * 109.45987 * 119.29971 * 15 14 12 47 47 H 1.09040 * 109.53258 * 186.16425 * 16 15 14 48 48 H 1.09014 * 109.56951 * 306.28734 * 16 15 14 49 49 H 0.96993 * 120.00079 * 180.02562 * 21 20 18 50 50 H 1.09143 * 109.25396 * 245.63250 * 26 17 16 51 51 H 1.08972 * 109.37191 * 5.31745 * 26 17 16 52 52 H 1.09032 * 109.34765 * 180.32497 * 27 9 7 53 53 H 1.09155 * 109.26672 * 60.72466 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0360 0.8856 -1.2524 6 6 4.0353 2.7932 0.2388 7 6 5.5215 2.7184 0.4767 8 8 6.0867 1.6457 0.4500 9 7 6.2231 3.8444 0.7183 10 6 5.5690 5.1693 0.7449 11 6 5.2358 5.5410 2.1899 12 6 6.5104 5.8125 2.9480 13 8 7.2025 6.7654 2.6585 14 7 6.8646 4.9763 3.9609 15 6 8.2342 5.1133 4.4943 16 6 8.9617 3.7769 4.3339 17 7 9.1453 3.4955 2.8952 18 6 10.3389 3.7321 2.2662 19 1 11.0227 4.4673 2.6642 20 6 10.6697 3.0268 1.1173 21 7 10.0315 1.9144 0.8212 22 14 12.0208 3.6564 -0.0087 23 1 13.3065 3.0047 0.3484 24 1 11.6790 3.3377 -1.4182 25 1 12.1509 5.1273 0.1487 26 6 7.9815 2.9410 2.1719 27 6 7.6809 3.8174 0.9573 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 5.1233 0.8323 -1.1974 36 1 3.6304 -0.1147 -1.4043 37 1 3.7452 1.5259 -2.0853 38 1 3.5485 3.2238 1.1138 39 1 3.8377 3.4189 -0.6316 40 1 6.2408 5.9158 0.3200 41 1 4.6507 5.1327 0.1568 42 1 4.6978 4.7214 2.6656 43 1 4.6128 6.4365 2.1994 44 1 6.2515 4.3067 4.3055 45 1 8.7705 5.8895 3.9507 46 1 8.1876 5.3767 5.5521 47 1 9.9353 3.8310 4.8217 48 1 8.3703 2.9823 4.7892 49 1 10.2629 1.4214 0.0186 50 1 8.2120 1.9259 1.8437 51 1 7.1193 2.9185 2.8379 52 1 8.0366 4.8326 1.1351 53 1 8.1824 3.4079 0.0786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131392758.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:26 Heat of formation + Delta-G solvation = -49.016003 kcal Electronic energy + Delta-G solvation = -32815.271755 eV Core-core repulsion = 28722.476754 eV Total energy + Delta-G solvation = -4092.795001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.28568 -40.27969 -38.39136 -37.72099 -36.68789 -35.34380 -34.03356 -33.20061 -31.95140 -31.20445 -29.39104 -28.17793 -27.76702 -26.01948 -25.09993 -24.35017 -23.11837 -22.05631 -21.58450 -21.23554 -19.74434 -18.65239 -18.22059 -17.85475 -17.37613 -16.92005 -16.73836 -16.49563 -16.40473 -16.01190 -15.68862 -15.47425 -15.16767 -15.05919 -14.81115 -14.56887 -14.37619 -14.16357 -13.94515 -13.71387 -13.49956 -13.36820 -13.21983 -12.96963 -12.84979 -12.74095 -12.69200 -12.58475 -12.48047 -12.39283 -12.26796 -12.11951 -11.94365 -11.88334 -11.80613 -11.49933 -11.39453 -10.78516 -10.66187 -10.49580 -9.90510 -9.61484 -9.19636 -8.61789 -7.67704 -5.27711 1.39292 1.42566 1.50949 1.70513 1.86467 2.00273 2.50122 2.55717 3.01543 3.33416 3.58365 3.70607 3.85211 4.02434 4.09661 4.18805 4.28883 4.29404 4.37638 4.40247 4.45146 4.52480 4.53114 4.56450 4.60031 4.64522 4.70027 4.73663 4.75543 4.79778 4.88005 4.89481 4.93863 4.98136 5.01646 5.15498 5.27627 5.29501 5.34038 5.35620 5.48619 5.60818 5.62162 5.70568 5.97686 6.02186 6.19580 6.34900 6.70541 6.76651 7.16131 7.42698 7.45603 7.87568 8.40549 9.21111 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.003936 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.455464 B = 7112.805404 C = 8438.417368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.059 3.941 4 N -0.547 5.547 5 C 0.024 3.976 6 C 0.049 3.951 7 C 0.503 3.497 8 O -0.556 6.556 9 N -0.620 5.620 10 C 0.113 3.887 11 C -0.150 4.150 12 C 0.514 3.486 13 O -0.589 6.589 14 N -0.718 5.718 15 C 0.099 3.901 16 C 0.123 3.877 17 N -0.608 5.608 18 C -0.251 4.251 19 H 0.062 0.938 20 C -0.042 4.042 21 N -0.910 5.910 22 Si 0.944 3.056 23 H -0.284 1.284 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.181 3.819 27 C 0.147 3.853 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.108 0.892 43 H 0.139 0.861 44 H 0.413 0.587 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.061 0.939 48 H 0.048 0.952 49 H 0.241 0.759 50 H 0.035 0.965 51 H 0.040 0.960 52 H 0.055 0.945 53 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.019 4.137 1.660 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.068 4.068 4 N -0.271 5.271 5 C -0.124 4.124 6 C -0.081 4.081 7 C 0.291 3.709 8 O -0.432 6.432 9 N -0.356 5.356 10 C -0.010 4.010 11 C -0.191 4.191 12 C 0.302 3.698 13 O -0.469 6.469 14 N -0.372 5.372 15 C -0.028 4.028 16 C -0.003 4.003 17 N -0.331 5.331 18 C -0.382 4.382 19 H 0.080 0.920 20 C -0.238 4.238 21 N -0.556 5.556 22 Si 0.773 3.227 23 H -0.211 1.211 24 H -0.225 1.225 25 H -0.200 1.200 26 C 0.056 3.944 27 C 0.023 3.977 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.152 0.848 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.149 0.851 42 H 0.126 0.874 43 H 0.156 0.844 44 H 0.250 0.750 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.051 0.949 50 H 0.053 0.947 51 H 0.058 0.942 52 H 0.073 0.927 53 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -22.031 3.765 1.699 22.415 hybrid contribution 1.240 0.152 -1.394 1.872 sum -20.791 3.917 0.304 21.159 Atomic orbital electron populations 1.21691 0.94017 1.02150 1.02376 1.21532 0.96502 0.96136 1.01870 1.22260 0.84668 0.97890 1.01980 1.61568 1.08796 1.20731 1.36040 1.22429 1.00765 1.00079 0.89118 1.22060 0.90010 0.91505 1.04549 1.21266 0.90471 0.82879 0.76256 1.90752 1.72214 1.29584 1.50680 1.49058 1.08258 1.07376 1.70910 1.21975 1.00009 0.83214 0.95799 1.22257 0.94850 1.06264 0.95698 1.21469 0.87932 0.80996 0.79369 1.90662 1.57367 1.30946 1.67926 1.46446 1.15312 1.37765 1.37650 1.22210 0.82962 0.99022 0.98581 1.21640 0.98818 0.94863 0.84997 1.44754 1.08574 1.75157 1.04621 1.19195 0.96260 1.14896 1.07831 0.92026 1.25521 1.00445 0.95972 1.01909 1.70182 1.44199 1.15155 1.26041 0.85609 0.80170 0.78235 0.78674 1.21096 1.22516 1.20013 1.20941 0.86411 0.96708 0.90385 1.21762 0.78392 0.99065 0.98452 0.91863 0.92212 0.92414 0.92727 0.92512 0.89067 0.93689 0.93182 0.90776 0.95057 0.84813 0.89865 0.91381 0.85075 0.87397 0.84361 0.74956 0.92308 0.89440 0.92031 0.93398 0.94903 0.94700 0.94165 0.92704 0.96402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.96 5.86 30.60 0.18 -1.78 16 3 C 0.06 0.92 4.96 86.30 0.43 1.35 16 4 N -0.55 -12.89 4.50 -927.02 -4.17 -17.06 16 5 C 0.02 0.63 9.01 127.69 1.15 1.79 16 6 C 0.05 1.03 4.01 85.55 0.34 1.38 16 7 C 0.50 16.87 7.19 87.64 0.63 17.50 16 8 O -0.56 -25.35 13.38 -3.02 -0.04 -25.39 16 9 N -0.62 -20.69 2.62 -815.43 -2.14 -22.82 16 10 C 0.11 2.54 5.50 86.10 0.47 3.02 16 11 C -0.15 -2.85 6.08 29.83 0.18 -2.67 16 12 C 0.51 15.58 5.10 87.48 0.45 16.03 16 13 O -0.59 -23.48 16.03 -3.00 -0.05 -23.53 16 14 N -0.72 -20.39 3.72 -458.81 -1.71 -22.10 16 15 C 0.10 3.23 6.65 86.17 0.57 3.80 16 16 C 0.12 4.77 6.05 86.14 0.52 5.29 16 17 N -0.61 -30.16 2.70 -695.60 -1.88 -32.04 16 18 C -0.25 -14.06 9.22 84.03 0.77 -13.28 16 19 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 20 C -0.04 -2.41 4.46 84.86 0.38 -2.03 16 21 N -0.91 -56.06 10.07 21.65 0.22 -55.84 16 22 Si 0.94 47.34 29.59 68.60 2.03 49.37 16 23 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 25 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 26 C 0.18 8.82 3.62 86.05 0.31 9.13 16 27 C 0.15 6.80 4.05 86.06 0.35 7.14 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.95 6.47 -2.39 -0.02 0.94 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.12 7.93 -2.39 -0.02 1.10 16 34 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 35 H 0.05 1.77 5.88 -2.39 -0.01 1.75 16 36 H 0.07 1.78 6.30 -2.38 -0.02 1.76 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.13 1.84 7.93 -2.39 -0.02 1.82 16 39 H 0.08 1.35 7.48 -2.39 -0.02 1.33 16 40 H 0.07 1.85 7.80 -2.36 -0.02 1.83 16 41 H 0.13 1.70 6.45 -2.33 -0.02 1.68 16 42 H 0.11 1.51 7.93 -2.40 -0.02 1.50 16 43 H 0.14 1.72 8.15 -2.33 -0.02 1.70 16 44 H 0.41 9.34 8.43 -92.63 -0.78 8.56 16 45 H 0.06 2.38 6.82 -2.45 -0.02 2.37 16 46 H 0.09 2.24 8.15 -2.33 -0.02 2.22 16 47 H 0.06 2.37 8.03 -2.37 -0.02 2.36 16 48 H 0.05 1.72 8.06 -2.38 -0.02 1.70 16 49 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.04 2.12 5.87 -2.31 -0.01 2.11 16 51 H 0.04 1.74 6.24 -2.40 -0.01 1.72 16 52 H 0.05 2.72 6.29 -2.37 -0.01 2.70 16 53 H 0.02 0.99 7.07 -2.30 -0.02 0.97 16 Total: -1.00 -82.27 397.93 -0.16 -82.43 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.12 Total: 21.26 kcal Atomic # 6 Polarization: 38.28 SS G_CDS: 7.45 Total: 45.74 kcal Atomic # 7 Polarization: -140.19 SS G_CDS: -9.68 Total: -149.87 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.09 Total: -48.92 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -82.27 -0.16 -82.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131392758.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.411 kcal (2) G-P(sol) polarization free energy of solvation -82.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds