Wall clock time and date at job start Sat Apr 11 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47293 * 2 1 4 4 N 1.46896 * 109.47403 * 180.02562 * 3 2 1 5 5 C 1.47846 * 111.00121 * 56.83221 * 4 3 2 6 6 C 1.54902 * 104.79561 * 146.36604 * 5 4 3 7 7 C 1.55138 * 101.65578 * 322.93136 * 6 5 4 8 8 C 1.47438 * 111.00107 * 177.67925 * 4 3 2 9 9 H 1.08996 * 109.89539 * 117.17163 * 8 4 3 10 10 C 1.50702 * 109.88864 * 356.14423 * 8 4 3 11 11 O 1.21286 * 119.99963 * 300.62845 * 10 8 4 12 12 N 1.34776 * 119.99869 * 120.63817 * 10 8 4 13 13 C 1.46504 * 119.99883 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47085 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47045 * 179.97438 * 14 13 12 16 16 N 1.46900 * 109.46976 * 180.02562 * 15 14 13 17 17 C 1.46898 * 111.00047 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47363 * 179.97438 * 17 16 15 19 19 O 1.21294 * 120.00183 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00264 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00473 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99577 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00484 * 180.02562 * 21 20 18 24 24 N 1.31420 * 120.00086 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00359 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46850 * 89.99810 * 25 23 21 27 27 H 1.48501 * 109.47172 * 209.99888 * 25 23 21 28 28 H 1.48494 * 109.47025 * 330.00020 * 25 23 21 29 29 H 1.09005 * 109.47042 * 59.99829 * 1 2 3 30 30 H 1.09001 * 109.47121 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47077 * 300.00335 * 1 2 3 32 32 H 1.09001 * 109.46896 * 240.00102 * 2 1 3 33 33 H 1.08995 * 109.47139 * 120.00242 * 2 1 3 34 34 H 1.08995 * 109.46907 * 59.99495 * 3 2 1 35 35 H 1.09005 * 109.47216 * 300.00064 * 3 2 1 36 36 H 1.09004 * 110.37188 * 265.19673 * 5 4 3 37 37 H 1.09000 * 110.37308 * 27.53344 * 5 4 3 38 38 H 1.08998 * 110.99176 * 81.02041 * 6 5 4 39 39 H 1.09000 * 110.99377 * 204.83376 * 6 5 4 40 40 H 1.09002 * 110.70492 * 277.27648 * 7 6 5 41 41 H 1.08999 * 110.70888 * 154.03981 * 7 6 5 42 42 H 0.96999 * 120.00137 * 359.97438 * 12 10 8 43 43 H 1.09002 * 109.46946 * 59.99102 * 13 12 10 44 44 H 1.09002 * 109.46882 * 299.99547 * 13 12 10 45 45 H 1.09002 * 109.47050 * 59.99719 * 14 13 12 46 46 H 1.09002 * 109.47353 * 299.99825 * 14 13 12 47 47 H 1.08992 * 109.47166 * 60.00147 * 15 14 13 48 48 H 1.08995 * 109.46870 * 299.99646 * 15 14 13 49 49 H 1.00897 * 111.00311 * 303.95419 * 16 15 14 50 50 H 1.08998 * 109.47206 * 299.99982 * 17 16 15 51 51 H 1.09010 * 109.47070 * 60.00291 * 17 16 15 52 52 H 0.97006 * 119.99717 * 359.97438 * 20 18 17 53 53 H 0.96997 * 120.00146 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0384 0.6876 -1.1563 6 6 5.3441 1.4245 -1.5456 7 6 4.9554 2.9051 -1.2938 8 6 4.0373 2.8178 -0.0564 9 1 4.6076 3.0330 0.8472 10 6 2.9010 3.7985 -0.1909 11 8 2.1502 3.7301 -1.1409 12 7 2.7192 4.7517 0.7445 13 6 1.6142 5.7047 0.6141 14 6 1.6326 6.6722 1.7991 15 6 0.4789 7.6679 1.6625 16 7 0.4970 8.5973 2.8000 17 6 -0.5989 9.5705 2.7021 18 6 -0.5485 10.5045 3.8837 19 8 0.3157 10.3726 4.7245 20 7 -1.4636 11.4863 4.0063 21 6 -1.4175 12.3362 5.0810 22 1 -0.6480 12.2188 5.8296 23 6 -2.3612 13.3481 5.2076 24 7 -3.2979 13.4907 4.2969 25 14 -2.2988 14.5058 6.6723 26 1 -1.4503 15.6785 6.3405 27 1 -3.6726 14.9653 6.9990 28 1 -1.7237 13.7938 7.8417 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 4.2544 -0.3419 -0.8703 37 1 3.3281 0.7116 -1.9828 38 1 6.1698 1.1226 -0.9013 39 1 5.5885 1.2579 -2.5947 40 1 4.4135 3.3119 -2.1476 41 1 5.8396 3.5041 -1.0762 42 1 3.3195 4.8062 1.5045 43 1 0.6677 5.1641 0.6014 44 1 1.7251 6.2647 -0.3145 45 1 2.5790 7.2128 1.8121 46 1 1.5214 6.1119 2.7274 47 1 -0.4676 7.1277 1.6492 48 1 0.5906 8.2282 0.7343 49 1 0.4601 8.0976 3.6758 50 1 -0.4946 10.1437 1.7808 51 1 -1.5533 9.0438 2.6963 52 1 -2.1546 11.5920 3.3336 53 1 -3.9570 14.1969 4.3855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159327383.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:01 Heat of formation + Delta-G solvation = -102.640261 kcal Electronic energy + Delta-G solvation = -28929.456986 eV Core-core repulsion = 24834.336663 eV Total energy + Delta-G solvation = -4095.120323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82076 -40.17311 -39.04703 -37.58449 -36.13428 -35.68444 -35.45677 -33.30636 -32.59108 -31.74195 -30.44955 -28.50886 -26.60154 -26.37363 -24.78615 -23.26182 -22.88125 -22.60525 -21.52916 -21.12814 -20.72464 -19.90641 -18.31464 -17.85951 -17.48093 -17.27471 -16.72814 -16.62209 -16.38096 -16.25813 -16.11404 -15.89486 -15.60940 -15.14714 -15.05184 -14.62409 -14.48921 -14.42269 -14.16924 -13.66051 -13.55143 -13.36471 -13.24207 -13.15870 -13.01936 -12.86337 -12.70053 -12.59588 -12.44510 -12.41742 -12.25683 -12.11879 -12.10156 -11.91100 -11.76415 -11.72151 -11.59946 -11.51255 -11.10494 -10.36719 -10.17995 -10.02555 -9.35725 -9.29047 -8.47313 -5.96447 1.38143 1.42021 1.42316 1.54838 2.03935 2.07656 2.29439 2.91572 2.93046 3.19931 3.45836 3.51053 3.67831 3.76787 3.97670 3.99932 4.09285 4.12747 4.15708 4.18574 4.32359 4.33775 4.40047 4.46773 4.50174 4.53718 4.56950 4.62231 4.66699 4.71960 4.74356 4.81990 4.83437 4.90404 4.99704 5.05548 5.10103 5.13517 5.18136 5.24003 5.27301 5.31841 5.40300 5.41025 5.83133 5.86956 5.91597 6.08265 6.38716 6.46613 6.58974 7.11558 7.13918 7.55027 8.10032 8.70007 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.001410 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.144994 B =19859.570580 C =20422.110260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.027 3.973 4 N -0.507 5.507 5 C 0.035 3.965 6 C -0.120 4.120 7 C -0.128 4.128 8 C 0.052 3.948 9 H 0.123 0.877 10 C 0.499 3.501 11 O -0.575 6.575 12 N -0.714 5.714 13 C 0.127 3.873 14 C -0.115 4.115 15 C 0.063 3.937 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.038 0.962 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.416 0.584 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.078 0.922 49 H 0.345 0.655 50 H 0.104 0.896 51 H 0.066 0.934 52 H 0.396 0.604 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.621 -27.327 -13.045 33.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.101 4.101 4 N -0.232 5.232 5 C -0.092 4.092 6 C -0.158 4.158 7 C -0.167 4.167 8 C -0.059 4.059 9 H 0.141 0.859 10 C 0.286 3.714 11 O -0.455 6.455 12 N -0.366 5.366 13 C 0.003 3.997 14 C -0.153 4.153 15 C -0.066 4.066 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.057 0.943 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.253 0.747 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.164 0.836 50 H 0.122 0.878 51 H 0.084 0.916 52 H 0.230 0.770 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.096 -27.122 -12.989 33.212 hybrid contribution -1.596 0.877 0.177 1.830 sum 12.499 -26.245 -12.813 31.768 Atomic orbital electron populations 1.21712 0.95289 1.02304 1.01427 1.21498 0.95918 0.95220 1.02619 1.22819 0.87591 0.98484 1.01227 1.64217 1.08091 1.08998 1.41866 1.23210 0.95909 0.99123 0.91008 1.22712 0.97324 0.92815 1.02934 1.22769 0.99223 0.99153 0.95534 1.22789 0.93507 0.87337 1.02294 0.85897 1.21460 0.86565 0.81698 0.81718 1.90630 1.48546 1.72821 1.33500 1.46066 1.32354 1.31406 1.26792 1.21176 0.89639 0.90237 0.98656 1.21581 0.99884 0.96020 0.97796 1.21901 0.97542 0.93091 0.94087 1.60048 1.46254 1.19039 1.06214 1.21536 0.94248 0.94338 0.96710 1.20881 0.83168 0.84185 0.89341 1.90485 1.39298 1.75076 1.46118 1.41941 1.27874 1.27708 1.23493 1.19691 1.13926 1.10142 1.02805 0.90238 1.26056 0.94740 0.99180 1.01272 1.69676 1.16400 1.34194 1.35839 0.84909 0.77891 0.77863 0.77556 1.19650 1.19536 1.19709 0.93586 0.91244 0.93011 0.91601 0.91097 0.92336 0.92811 0.88602 0.94323 0.88884 0.89430 0.92425 0.88075 0.74723 0.92254 0.91980 0.90140 0.90491 0.94187 0.90339 0.83592 0.87834 0.91572 0.76967 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.11 -1.69 5.77 30.59 0.18 -1.51 16 3 C 0.03 0.49 3.70 86.30 0.32 0.80 16 4 N -0.51 -7.79 5.26 -864.91 -4.55 -12.33 16 5 C 0.03 0.44 5.36 86.77 0.46 0.90 16 6 C -0.12 -1.09 7.08 31.98 0.23 -0.87 16 7 C -0.13 -1.52 6.44 31.78 0.20 -1.31 16 8 C 0.05 0.72 3.84 44.52 0.17 0.89 16 9 H 0.12 1.17 7.94 -2.39 -0.02 1.15 16 10 C 0.50 9.38 5.08 87.66 0.45 9.82 16 11 O -0.58 -15.27 13.82 -3.05 -0.04 -15.31 16 12 N -0.71 -10.75 5.56 -463.05 -2.57 -13.32 16 13 C 0.13 2.17 5.67 86.38 0.49 2.66 16 14 C -0.11 -1.93 5.59 30.59 0.17 -1.76 16 15 C 0.06 1.35 5.69 86.30 0.49 1.84 16 16 N -0.68 -20.66 6.13 -517.94 -3.17 -23.83 16 17 C 0.06 2.17 6.17 85.56 0.53 2.70 16 18 C 0.44 20.77 7.82 87.66 0.69 21.45 16 19 O -0.62 -34.46 15.78 -3.07 -0.05 -34.51 16 20 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 21 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 24 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 25 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.90 6.90 -2.39 -0.02 0.88 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.17 7.64 -2.39 -0.02 1.15 16 35 H 0.05 1.29 5.34 -2.38 -0.01 1.27 16 36 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.04 0.59 7.48 -2.39 -0.02 0.57 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.95 7.52 -2.39 -0.02 0.93 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.42 4.11 8.32 -92.71 -0.77 3.34 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.35 10.84 8.43 -89.70 -0.76 10.08 16 50 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 51 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 52 H 0.40 19.35 7.90 -92.70 -0.73 18.62 16 53 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -72.06 422.23 -4.67 -76.73 By element: Atomic # 1 Polarization: 43.89 SS G_CDS: -1.34 Total: 42.55 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.37 Total: 15.66 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -11.63 Total: -130.00 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.09 Total: -49.82 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.06 -4.67 -76.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159327383.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.907 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds