Wall clock time and date at job start Sat Apr 11 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46797 * 2 1 4 4 C 1.53008 * 109.46797 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46797 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47176 * 305.00079 * 5 4 3 7 7 N 1.46503 * 109.47308 * 65.00145 * 5 4 3 8 8 C 1.34776 * 119.99838 * 59.99551 * 7 5 4 9 9 N 1.34774 * 119.99993 * 180.02562 * 8 7 5 10 10 O 1.21594 * 120.00380 * 359.97438 * 8 7 5 11 11 C 1.50696 * 109.46880 * 184.99896 * 5 4 3 12 12 O 1.21285 * 120.00235 * 260.00013 * 11 5 4 13 13 N 1.34775 * 120.00074 * 80.00126 * 11 5 4 14 14 C 1.46502 * 120.00160 * 174.40521 * 13 11 5 15 15 C 1.53002 * 109.46992 * 184.87956 * 14 13 11 16 16 C 1.53003 * 109.47183 * 178.78418 * 15 14 13 17 17 C 1.53005 * 115.54963 * 40.17276 * 16 15 14 18 18 N 1.46504 * 109.47170 * 65.20373 * 17 16 15 19 19 C 1.36933 * 119.99802 * 185.12120 * 18 17 16 20 20 H 1.08005 * 120.00336 * 4.90606 * 19 18 17 21 21 C 1.38811 * 119.99959 * 184.91544 * 19 18 17 22 22 N 1.31617 * 120.00465 * 183.49376 * 21 19 18 23 23 Si 1.86805 * 119.99673 * 3.49164 * 21 19 18 24 24 H 1.48500 * 109.47190 * 91.19045 * 23 21 19 25 25 H 1.48503 * 109.46998 * 211.19085 * 23 21 19 26 26 H 1.48498 * 109.47240 * 331.18626 * 23 21 19 27 27 C 1.52994 * 117.49723 * 254.46942 * 16 15 14 28 28 C 1.52998 * 117.49987 * 185.84521 * 16 15 14 29 29 H 1.08997 * 109.47195 * 300.00052 * 1 2 3 30 30 H 1.09001 * 109.46820 * 59.99792 * 1 2 3 31 31 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46888 * 240.00397 * 2 1 3 33 33 H 1.09000 * 109.47237 * 119.99872 * 2 1 3 34 34 H 1.08998 * 109.47078 * 60.00513 * 3 2 1 35 35 H 1.09000 * 109.47122 * 299.99942 * 3 2 1 36 36 H 1.08998 * 109.46888 * 60.00397 * 4 3 2 37 37 H 1.09001 * 109.46820 * 300.00208 * 4 3 2 38 38 H 0.96994 * 119.99873 * 240.00180 * 7 5 4 39 39 H 0.97001 * 120.00209 * 359.97438 * 9 8 7 40 40 H 0.97002 * 120.00249 * 180.02562 * 9 8 7 41 41 H 0.97002 * 120.00421 * 354.40304 * 13 11 5 42 42 H 1.09001 * 109.47198 * 304.87580 * 14 13 11 43 43 H 1.09001 * 109.47390 * 64.87866 * 14 13 11 44 44 H 1.09001 * 109.47072 * 298.77730 * 15 14 13 45 45 H 1.08996 * 109.47544 * 58.77984 * 15 14 13 46 46 H 1.08997 * 109.46751 * 185.20390 * 17 16 15 47 47 H 1.09001 * 109.46999 * 305.20240 * 17 16 15 48 48 H 0.96999 * 119.99349 * 5.11699 * 18 17 16 49 49 H 0.97000 * 120.00207 * 180.02562 * 22 21 19 50 50 H 1.09000 * 117.50278 * 359.97438 * 27 16 15 51 51 H 1.08997 * 117.50309 * 145.02308 * 27 16 15 52 52 H 1.09001 * 117.49395 * 214.97748 * 28 16 15 53 53 H 1.08995 * 117.50003 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8851 -0.0013 6 1 3.6450 3.4238 -0.8431 7 7 3.6930 3.5404 1.2505 8 6 4.1180 3.0453 2.4298 9 7 3.7615 3.6479 3.5814 10 8 4.8223 2.0544 2.4548 11 6 5.5818 2.8868 -0.1257 12 8 6.2718 3.0401 0.8599 13 7 6.1582 2.7181 -1.3322 14 6 7.6112 2.8418 -1.4737 15 6 7.9913 2.7269 -2.9513 16 6 9.5055 2.8864 -3.1022 17 6 10.3517 2.1984 -2.0290 18 7 10.1794 0.7469 -2.1275 19 6 10.7595 -0.0759 -1.1993 20 1 11.2770 0.3472 -0.3509 21 6 10.6827 -1.4538 -1.3487 22 7 11.1799 -2.2451 -0.4220 23 14 9.8734 -2.1850 -2.8653 24 1 10.8988 -2.4028 -3.9172 25 1 9.2426 -3.4824 -2.5129 26 1 8.8356 -1.2513 -3.3714 27 6 10.0234 4.2091 -3.6703 28 6 10.0722 2.9393 -4.5224 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9330 0.9289 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 3.1308 4.3306 1.2306 39 1 3.1994 4.4382 3.5615 40 1 4.0677 3.2918 4.4301 41 1 5.6112 2.5148 -2.1070 42 1 7.9324 3.8102 -1.0901 43 1 8.1001 2.0473 -0.9099 44 1 7.6894 1.7501 -3.3292 45 1 7.4854 3.5082 -3.5184 46 1 11.4017 2.4506 -2.1774 47 1 10.0327 2.5361 -1.0430 48 1 9.6544 0.3688 -2.8502 49 1 11.1266 -3.2080 -0.5267 50 1 9.2854 4.9657 -3.9370 51 1 10.9671 4.5896 -3.2797 52 1 11.0481 2.4843 -4.6920 53 1 9.3664 2.8601 -5.3492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168463855.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:28 Heat of formation + Delta-G solvation = -76.946276 kcal Electronic energy + Delta-G solvation = -30785.035576 eV Core-core repulsion = 26691.029428 eV Total energy + Delta-G solvation = -4094.006148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60106 -40.09921 -39.41124 -37.17812 -36.07039 -35.81933 -35.18391 -34.41176 -33.25370 -31.81737 -30.86383 -28.18330 -27.59589 -24.61286 -24.28711 -23.68538 -23.07031 -22.57834 -21.77294 -21.04903 -20.36932 -19.59223 -19.16024 -18.40414 -17.63767 -17.08563 -16.66812 -16.61732 -16.49634 -16.24983 -15.74725 -15.70635 -15.29704 -15.19347 -15.04339 -14.87626 -14.77521 -14.41421 -14.17600 -14.02644 -13.80763 -13.51241 -13.44475 -13.01135 -12.87358 -12.79630 -12.55140 -12.23141 -12.20465 -12.19509 -12.02507 -11.91799 -11.82919 -11.76800 -11.46448 -11.25700 -11.10249 -10.97179 -10.82162 -10.57407 -10.47393 -10.02034 -9.82600 -9.29702 -8.05153 -5.38311 1.31447 1.39046 1.45783 1.66880 1.91581 2.26814 2.46140 2.52874 2.85700 3.25285 3.66574 3.70106 3.72168 3.79418 3.90283 3.94926 4.01869 4.08176 4.12860 4.17242 4.27051 4.42317 4.43048 4.49924 4.54562 4.63768 4.82489 4.86143 4.87506 4.93313 4.99510 5.01589 5.04113 5.09469 5.15223 5.24100 5.26314 5.30991 5.33120 5.36746 5.39852 5.50783 5.54432 5.55760 5.72179 5.99274 6.10017 6.19012 6.66939 7.06481 7.22864 7.41055 7.81972 7.87691 8.05090 9.17311 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.003093 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.209950 B = 9051.775019 C = 9964.627357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.098 4.098 4 C -0.135 4.135 5 C 0.164 3.836 6 H 0.165 0.835 7 N -0.717 5.717 8 C 0.697 3.303 9 N -0.855 5.855 10 O -0.622 6.622 11 C 0.482 3.518 12 O -0.563 6.563 13 N -0.717 5.717 14 C 0.130 3.870 15 C -0.070 4.070 16 C -0.151 4.151 17 C 0.188 3.812 18 N -0.746 5.746 19 C -0.236 4.236 20 H 0.043 0.957 21 C -0.068 4.068 22 N -0.988 5.988 23 Si 0.964 3.036 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.246 1.246 27 C -0.147 4.147 28 C -0.163 4.163 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.420 0.580 39 H 0.412 0.588 40 H 0.414 0.586 41 H 0.415 0.585 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.016 0.984 47 H 0.014 0.986 48 H 0.369 0.631 49 H 0.258 0.742 50 H 0.123 0.877 51 H 0.090 0.910 52 H 0.081 0.919 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.256 19.381 -7.337 34.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C -0.135 4.135 4 C -0.174 4.174 5 C 0.054 3.946 6 H 0.182 0.818 7 N -0.375 5.375 8 C 0.395 3.605 9 N -0.424 5.424 10 O -0.501 6.501 11 C 0.268 3.732 12 O -0.439 6.439 13 N -0.372 5.372 14 C 0.005 3.995 15 C -0.108 4.108 16 C -0.152 4.152 17 C 0.062 3.938 18 N -0.391 5.391 19 C -0.367 4.367 20 H 0.061 0.939 21 C -0.259 4.259 22 N -0.638 5.638 23 Si 0.790 3.210 24 H -0.200 1.200 25 H -0.224 1.224 26 H -0.171 1.171 27 C -0.184 4.184 28 C -0.200 4.200 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.258 0.742 39 H 0.243 0.757 40 H 0.246 0.754 41 H 0.252 0.748 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.126 0.874 46 H 0.034 0.966 47 H 0.032 0.968 48 H 0.203 0.797 49 H 0.066 0.934 50 H 0.141 0.859 51 H 0.109 0.891 52 H 0.100 0.900 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -26.053 18.666 -6.583 32.719 hybrid contribution 0.073 -0.844 0.321 0.906 sum -25.980 17.823 -6.262 32.122 Atomic orbital electron populations 1.21729 0.94521 1.01777 1.02365 1.21554 0.96880 0.97262 1.01184 1.21468 0.92036 0.96771 1.03270 1.21976 0.97995 0.94412 1.02994 1.20846 0.88757 0.96588 0.88396 0.81785 1.44471 1.56228 1.33772 1.03050 1.16269 0.79260 0.82837 0.82101 1.42777 1.58320 1.34616 1.06718 1.91005 1.42554 1.29750 1.86743 1.21861 0.92624 0.76045 0.82696 1.90776 1.66024 1.49002 1.38113 1.45840 1.07987 1.72725 1.10616 1.21127 0.80401 1.00124 0.97809 1.21120 0.92486 1.03273 0.93883 1.21478 0.94789 1.02894 0.95993 1.20255 0.95638 0.82318 0.95615 1.42538 1.62307 1.02308 1.31988 1.19000 1.27066 0.88756 1.01900 0.93858 1.25620 1.02181 0.96200 1.01886 1.69923 1.53558 1.03361 1.36971 0.85281 0.78953 0.77508 0.79250 1.20014 1.22373 1.17058 1.23141 1.03196 0.90244 1.01821 1.23045 1.02548 1.01489 0.92905 0.92729 0.91280 0.93039 0.91952 0.94494 0.91969 0.88809 0.90336 0.93439 0.74235 0.75703 0.75398 0.74771 0.92611 0.95517 0.91536 0.87413 0.96642 0.96761 0.79732 0.93360 0.85864 0.89134 0.90030 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.06 16 2 C -0.13 -2.11 5.93 30.60 0.18 -1.93 16 3 C -0.10 -1.32 5.10 30.60 0.16 -1.17 16 4 C -0.13 -2.79 4.54 30.60 0.14 -2.65 16 5 C 0.16 2.98 3.01 44.24 0.13 3.11 16 6 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 7 N -0.72 -12.30 4.66 -461.41 -2.15 -14.45 16 8 C 0.70 18.44 7.59 179.06 1.36 19.80 16 9 N -0.85 -14.21 8.88 -184.74 -1.64 -15.85 16 10 O -0.62 -25.25 13.03 18.44 0.24 -25.01 16 11 C 0.48 14.41 6.81 87.66 0.60 15.01 16 12 O -0.56 -24.26 13.69 19.41 0.27 -24.00 16 13 N -0.72 -17.95 5.55 -463.05 -2.57 -20.52 16 14 C 0.13 4.10 4.80 86.38 0.41 4.52 16 15 C -0.07 -1.71 5.37 30.60 0.16 -1.55 16 16 C -0.15 -4.32 1.83 -52.18 -0.10 -4.41 16 17 C 0.19 7.80 5.32 86.38 0.46 8.26 16 18 N -0.75 -37.20 5.29 -343.44 -1.82 -39.01 16 19 C -0.24 -14.68 10.47 84.03 0.88 -13.80 16 20 H 0.04 3.01 8.06 -2.91 -0.02 2.99 16 21 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.99 -67.77 13.97 21.65 0.30 -67.47 16 23 Si 0.96 47.89 27.90 68.60 1.91 49.80 16 24 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 26 H -0.25 -10.76 6.30 99.48 0.63 -10.13 16 27 C -0.15 -3.14 9.87 30.59 0.30 -2.83 16 28 C -0.16 -3.86 9.97 30.59 0.31 -3.55 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.85 7.75 -2.39 -0.02 0.83 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.52 6.04 -2.39 -0.01 1.50 16 38 H 0.42 3.15 8.84 -92.71 -0.82 2.33 16 39 H 0.41 3.08 8.84 -92.71 -0.82 2.26 16 40 H 0.41 7.02 8.93 -92.71 -0.83 6.20 16 41 H 0.42 6.55 8.48 -92.71 -0.79 5.76 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.03 1.17 6.85 -2.39 -0.02 1.16 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.11 1.71 7.95 -2.39 -0.02 1.69 16 46 H 0.02 0.67 8.09 -2.39 -0.02 0.65 16 47 H 0.01 0.66 6.69 -2.39 -0.02 0.64 16 48 H 0.37 17.22 5.46 -92.71 -0.51 16.72 16 49 H 0.26 16.73 8.31 -92.71 -0.77 15.96 16 50 H 0.12 1.89 8.09 -2.39 -0.02 1.87 16 51 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -100.00 423.75 -2.17 -102.16 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -2.89 Total: 40.42 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 6.18 Total: 13.92 kcal Atomic # 7 Polarization: -149.43 SS G_CDS: -7.87 Total: -157.30 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: 0.51 Total: -49.01 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.91 Total: 49.80 kcal Total: -100.00 -2.17 -102.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168463855.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.218 kcal (2) G-P(sol) polarization free energy of solvation -99.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds