Wall clock time and date at job start Sat Apr 11 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48499 * 109.47372 * 274.99318 * 3 2 1 5 5 H 1.48500 * 109.47064 * 34.99482 * 3 2 1 6 6 H 1.48506 * 109.47240 * 154.99052 * 3 2 1 7 7 C 1.37876 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00276 * 189.57817 * 7 2 1 9 9 C 1.50700 * 119.99556 * 9.57209 * 7 2 1 10 10 C 1.53001 * 109.47304 * 65.44901 * 9 7 2 11 11 C 1.53000 * 109.47246 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47032 * 299.99751 * 11 10 9 13 13 N 1.46897 * 109.47342 * 180.02562 * 12 11 10 14 14 C 1.46841 * 111.00306 * 175.00256 * 13 12 11 15 15 C 1.53042 * 109.52428 * 174.15977 * 14 13 12 16 16 C 1.53120 * 109.27593 * 59.17680 * 15 14 13 17 17 H 1.09000 * 109.52472 * 62.25180 * 16 15 14 18 18 N 1.46905 * 109.52140 * 182.43775 * 16 15 14 19 19 C 1.47006 * 111.00097 * 303.63970 * 18 16 15 20 20 C 1.53101 * 109.25681 * 177.60799 * 19 18 16 21 21 O 1.43008 * 109.25989 * 56.84299 * 20 19 18 22 22 C 1.43017 * 113.74177 * 301.32941 * 21 20 19 23 23 C 1.47009 * 111.00170 * 179.97438 * 18 16 15 24 24 C 1.53118 * 109.16082 * 302.34516 * 16 15 14 25 25 H 1.09004 * 109.50104 * 177.59935 * 24 16 15 26 26 F 1.39895 * 109.50347 * 297.71460 * 24 16 15 27 27 C 1.46847 * 111.00099 * 50.78590 * 13 12 11 28 28 C 1.52998 * 109.47401 * 59.99884 * 12 11 10 29 29 C 1.52996 * 109.47260 * 300.00389 * 28 12 11 30 30 H 0.96999 * 119.99779 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47525 * 305.44345 * 9 7 2 32 32 H 1.08995 * 109.47283 * 59.99296 * 10 9 7 33 33 H 1.09003 * 109.46718 * 299.99922 * 10 9 7 34 34 H 1.08994 * 109.46828 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.46940 * 59.99804 * 11 10 9 36 36 H 1.09006 * 109.47319 * 299.99905 * 12 11 10 37 37 H 1.09006 * 109.46327 * 294.17124 * 14 13 12 38 38 H 1.08999 * 109.46973 * 54.14090 * 14 13 12 39 39 H 1.09005 * 109.50330 * 179.11248 * 15 14 13 40 40 H 1.08994 * 109.50287 * 299.19674 * 15 14 13 41 41 H 1.09004 * 109.50631 * 297.53708 * 19 18 16 42 42 H 1.08994 * 109.51001 * 57.66931 * 19 18 16 43 43 H 1.08999 * 109.50481 * 296.90520 * 20 19 18 44 44 H 1.09003 * 109.54563 * 176.80294 * 20 19 18 45 45 H 1.08997 * 109.50859 * 298.73818 * 22 21 20 46 46 H 1.09001 * 109.54293 * 178.62485 * 22 21 20 47 47 H 1.08997 * 109.51065 * 302.33405 * 23 18 16 48 48 H 1.09003 * 109.50722 * 62.41639 * 23 18 16 49 49 H 1.09000 * 109.46587 * 305.86134 * 27 13 12 50 50 H 1.09001 * 109.46158 * 65.82789 * 27 13 12 51 51 H 1.09006 * 109.46867 * 59.99744 * 28 12 11 52 52 H 1.08995 * 109.47403 * 179.97438 * 28 12 11 53 53 H 1.09005 * 109.47441 * 179.97438 * 29 28 12 54 54 H 1.09005 * 109.47122 * 299.99737 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2006 0.1551 9 6 1.2667 -2.4899 -0.2181 10 6 0.6905 -2.5170 -1.6352 11 6 -0.0580 -3.8330 -1.8564 12 6 0.9080 -5.0056 -1.6762 13 7 0.1895 -6.2691 -1.8891 14 6 1.1098 -7.4124 -1.8410 15 6 0.3111 -8.7155 -1.9205 16 6 -0.4922 -8.7373 -3.2238 17 1 0.1907 -8.7151 -4.0731 18 7 -1.3059 -9.9592 -3.2786 19 6 -0.4661 -11.1580 -3.1410 20 6 -1.3581 -12.4023 -3.1434 21 8 -2.1374 -12.4218 -4.3423 22 6 -2.9679 -11.2692 -4.5080 23 6 -2.0926 -10.0133 -4.5192 24 6 -1.4073 -7.5106 -3.2708 25 1 -1.9507 -7.4979 -4.2157 26 9 -2.3165 -7.5652 -2.2090 27 6 -0.5589 -6.2425 -3.1522 28 6 1.4843 -4.9786 -0.2591 29 6 2.2327 -3.6627 -0.0379 30 1 -0.4850 0.8401 0.0004 31 1 0.4558 -2.5723 0.5055 32 1 1.5015 -2.4346 -2.3588 33 1 0.0027 -1.6813 -1.7638 34 1 -0.4688 -3.8520 -2.8658 35 1 -0.8689 -3.9157 -1.1328 36 1 1.7190 -4.9229 -2.3998 37 1 1.8007 -7.3581 -2.6824 38 1 1.6719 -7.3873 -0.9075 39 1 0.9956 -9.5636 -1.9006 40 1 -0.3697 -8.7773 -1.0716 41 1 0.2334 -11.2101 -3.9754 42 1 0.0877 -11.1089 -2.2035 43 1 -2.0211 -12.3765 -2.2786 44 1 -0.7365 -13.2967 -3.0988 45 1 -3.6777 -11.2104 -3.6829 46 1 -3.5105 -11.3433 -5.4504 47 1 -2.7257 -9.1287 -4.5876 48 1 -1.4194 -10.0460 -5.3760 49 1 -1.2088 -5.3677 -3.1710 50 1 0.1398 -6.1937 -3.9874 51 1 0.6733 -5.0613 0.4645 52 1 2.1721 -5.8143 -0.1306 53 1 2.6429 -3.6432 0.9718 54 1 3.0437 -3.5798 -0.7616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338638.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:40 Heat of formation + Delta-G solvation = -111.776907 kcal Electronic energy + Delta-G solvation = -31668.480833 eV Core-core repulsion = 27553.044353 eV Total energy + Delta-G solvation = -4115.436480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.227 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.40987 -40.93742 -40.21874 -38.32065 -36.64223 -34.62332 -32.87969 -32.44975 -31.92735 -30.87656 -30.07702 -27.80646 -26.19006 -25.63519 -24.13564 -23.98574 -22.45197 -22.03413 -21.35027 -20.66768 -20.37428 -18.44172 -18.21669 -17.23291 -17.13033 -16.75856 -16.64086 -16.39469 -16.19767 -16.04339 -15.76994 -15.41053 -15.37343 -15.00380 -14.85719 -14.74969 -14.51457 -14.17562 -14.06410 -13.66247 -13.36752 -13.29770 -13.27129 -13.00017 -12.76533 -12.72075 -12.55794 -12.42671 -12.32336 -12.29605 -12.18080 -12.01315 -11.81027 -11.67318 -11.47897 -11.31486 -11.21156 -11.09905 -10.66000 -10.61656 -10.43199 -10.38848 -9.41264 -9.21259 -8.10564 -6.19015 1.39813 1.41176 1.51161 2.44001 2.56403 2.81298 2.94679 3.19025 3.37592 3.56404 3.72390 3.91204 3.92412 3.95516 3.98439 4.03471 4.15123 4.18976 4.27615 4.29375 4.32909 4.39660 4.41683 4.53963 4.57566 4.59634 4.62385 4.69538 4.72537 4.78393 4.80402 4.81819 4.83171 4.86720 4.88277 4.95565 4.99782 5.01685 5.09438 5.20945 5.28564 5.34592 5.40842 5.48057 5.62395 5.68058 5.89864 5.93087 6.04563 6.09166 6.13084 6.17120 6.24355 6.42370 6.94712 7.47619 8.97626 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.034185 B = 0.002191 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.882675 B =12774.601329 C =13231.957389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.092 4.092 11 C -0.101 4.101 12 C 0.105 3.895 13 N -0.541 5.541 14 C 0.053 3.947 15 C -0.102 4.102 16 C 0.065 3.935 17 H 0.064 0.936 18 N -0.539 5.539 19 C 0.017 3.983 20 C 0.062 3.938 21 O -0.404 6.404 22 C 0.064 3.936 23 C 0.013 3.987 24 C 0.108 3.892 25 H 0.099 0.901 26 F -0.211 7.211 27 C 0.022 3.978 28 C -0.096 4.096 29 C -0.100 4.100 30 H 0.259 0.741 31 H -0.007 1.007 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.116 0.884 45 H 0.055 0.945 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.046 0.954 49 H 0.085 0.915 50 H 0.061 0.939 51 H 0.049 0.951 52 H 0.074 0.926 53 H 0.045 0.955 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 -24.902 -11.150 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.131 4.131 11 C -0.139 4.139 12 C -0.003 4.003 13 N -0.265 5.265 14 C -0.075 4.075 15 C -0.140 4.140 16 C -0.044 4.044 17 H 0.082 0.918 18 N -0.264 5.264 19 C -0.110 4.110 20 C -0.015 4.015 21 O -0.323 6.323 22 C -0.012 4.012 23 C -0.115 4.115 24 C 0.071 3.929 25 H 0.117 0.883 26 F -0.192 7.192 27 C -0.106 4.106 28 C -0.134 4.134 29 C -0.138 4.138 30 H 0.068 0.932 31 H 0.011 0.989 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.134 0.866 45 H 0.074 0.926 46 H 0.133 0.867 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.103 0.897 50 H 0.079 0.921 51 H 0.068 0.932 52 H 0.093 0.907 53 H 0.064 0.936 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.286 -25.008 -10.480 27.212 hybrid contribution 1.147 1.848 -0.791 2.315 sum -1.139 -23.160 -11.271 25.782 Atomic orbital electron populations 1.70105 1.07305 1.27073 1.51315 1.25737 0.95521 1.02350 0.94982 0.85704 0.78976 0.79878 0.78084 1.20128 1.21193 1.19191 1.21615 0.94141 0.92735 1.48730 0.93038 1.18635 0.93615 0.92428 0.92832 1.21321 0.98036 0.95384 0.98324 1.21600 0.97758 0.94255 1.00280 1.21420 0.94117 0.87938 0.96835 1.61854 1.28128 1.02765 1.33794 1.22209 0.93746 0.89580 1.02003 1.21597 0.98556 0.96981 0.96840 1.22213 0.93794 0.89223 0.99121 0.91797 1.62171 1.26001 1.01705 1.36558 1.22876 0.95418 0.89983 1.02738 1.22791 0.93706 0.97868 0.87103 1.87953 1.58818 1.42583 1.42969 1.22732 0.92026 0.83422 1.03063 1.22881 0.97697 1.00347 0.90545 1.21726 0.88472 0.94489 0.88244 0.88337 1.92804 1.68875 1.97353 1.60132 1.22797 0.97888 0.98341 0.91603 1.21487 0.99110 0.97087 0.95710 1.21478 0.98028 0.94368 0.99892 0.93179 0.98921 0.94546 0.94400 0.91946 0.93843 0.94105 0.94050 0.89641 0.89086 0.91486 0.93853 0.88236 0.92540 0.86638 0.92619 0.86744 0.89204 0.93616 0.89706 0.92059 0.93229 0.90737 0.93593 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.57 12.16 21.45 0.26 -54.31 16 2 C 0.01 0.72 5.20 84.66 0.44 1.16 16 3 Si 0.95 44.13 29.55 68.60 2.03 46.16 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -29.80 8.48 25.60 0.22 -29.58 16 8 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 9 C 0.04 2.19 1.97 -11.54 -0.02 2.17 16 10 C -0.09 -4.27 5.04 30.59 0.15 -4.12 16 11 C -0.10 -3.81 4.66 30.59 0.14 -3.66 16 12 C 0.10 3.31 1.96 44.91 0.09 3.39 16 13 N -0.54 -14.48 4.46 -871.14 -3.89 -18.37 16 14 C 0.05 1.10 5.29 86.33 0.46 1.56 16 15 C -0.10 -1.86 4.82 30.65 0.15 -1.71 16 16 C 0.07 1.13 1.82 44.99 0.08 1.22 16 17 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 18 N -0.54 -9.10 4.48 -869.54 -3.90 -13.00 16 19 C 0.02 0.24 5.25 86.32 0.45 0.69 16 20 C 0.06 0.84 7.01 72.02 0.50 1.35 16 21 O -0.40 -7.01 10.83 -148.98 -1.61 -8.62 16 22 C 0.06 0.92 7.01 72.01 0.50 1.42 16 23 C 0.01 0.19 5.34 86.31 0.46 0.65 16 24 C 0.11 2.22 3.20 30.64 0.10 2.32 16 25 H 0.10 1.62 6.50 -2.38 -0.02 1.60 16 26 F -0.21 -5.95 16.50 44.97 0.74 -5.21 16 27 C 0.02 0.52 4.76 86.32 0.41 0.93 16 28 C -0.10 -3.24 5.12 30.59 0.16 -3.08 16 29 C -0.10 -4.05 5.14 30.59 0.16 -3.90 16 30 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 31 H -0.01 -0.43 8.09 -2.39 -0.02 -0.45 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.04 2.01 6.91 -2.39 -0.02 1.99 16 34 H 0.06 2.08 6.19 -2.39 -0.01 2.07 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.26 8.13 -2.38 -0.02 1.24 16 37 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.09 1.81 6.18 -2.39 -0.01 1.79 16 39 H 0.09 1.25 6.45 -2.38 -0.02 1.24 16 40 H 0.07 1.55 7.91 -2.39 -0.02 1.53 16 41 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 1.20 6.17 -2.39 -0.01 1.18 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.09 1.26 6.25 -2.39 -0.01 1.24 16 48 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 49 H 0.08 2.20 5.83 -2.39 -0.01 2.19 16 50 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 52 H 0.07 2.08 6.40 -2.39 -0.02 2.07 16 53 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 54 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -65.59 392.44 -1.05 -66.64 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.86 Total: 15.89 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 4.45 Total: -29.19 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -7.52 Total: -85.67 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -1.61 Total: -8.62 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.74 Total: -5.21 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -65.59 -1.05 -66.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338638.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.136 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds