Wall clock time and date at job start Sat Apr 11 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47195 * 119.99939 * 2 1 3 5 5 H 1.08991 * 109.47173 * 305.25984 * 4 2 1 6 6 C 1.50705 * 109.47097 * 65.26123 * 4 2 1 7 7 O 1.21278 * 120.00003 * 80.31556 * 6 4 2 8 8 N 1.34777 * 119.99758 * 260.32325 * 6 4 2 9 9 C 1.47425 * 125.64767 * 4.19635 * 8 6 4 10 10 C 1.55134 * 104.71940 * 155.81724 * 9 8 6 11 11 C 1.55160 * 101.48606 * 37.29807 * 10 9 8 12 12 H 1.08998 * 110.72124 * 82.69165 * 11 10 9 13 13 N 1.46901 * 110.86996 * 205.89617 * 11 10 9 14 14 C 1.46894 * 111.00101 * 268.61140 * 13 11 10 15 15 C 1.50703 * 109.47273 * 180.02562 * 14 13 11 16 16 O 1.21291 * 119.99680 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00072 * 179.97438 * 15 14 13 18 18 C 1.37096 * 119.99995 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99821 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00230 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99430 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00197 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47048 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46878 * 120.00002 * 22 20 18 25 25 H 1.48495 * 109.47264 * 240.00255 * 22 20 18 26 26 C 1.47023 * 125.64644 * 184.50163 * 8 6 4 27 27 N 1.46899 * 109.47030 * 185.25776 * 4 2 1 28 28 C 1.46905 * 110.99865 * 179.56834 * 27 4 2 29 29 C 1.46900 * 111.00246 * 303.51881 * 27 4 2 30 30 H 1.08997 * 109.47502 * 64.19765 * 1 2 3 31 31 H 1.08999 * 109.47265 * 184.19676 * 1 2 3 32 32 H 1.09003 * 109.47306 * 304.19822 * 1 2 3 33 33 H 1.09004 * 109.47016 * 240.00317 * 2 1 3 34 34 H 1.09002 * 109.47630 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47120 * 300.00497 * 3 2 1 36 36 H 1.08997 * 109.46970 * 59.99854 * 3 2 1 37 37 H 1.08996 * 110.36728 * 274.74188 * 9 8 6 38 38 H 1.09002 * 110.36780 * 37.07132 * 9 8 6 39 39 H 1.08994 * 111.19275 * 279.18886 * 10 9 8 40 40 H 1.09008 * 110.93513 * 155.28981 * 10 9 8 41 41 H 1.00900 * 110.99940 * 144.65206 * 13 11 10 42 42 H 1.09007 * 109.46859 * 299.99815 * 14 13 11 43 43 H 1.08993 * 109.47503 * 59.99625 * 14 13 11 44 44 H 0.96999 * 119.99826 * 359.97438 * 17 15 14 45 45 H 0.97008 * 119.99390 * 179.97438 * 21 20 18 46 46 H 1.08993 * 109.88462 * 300.44072 * 26 8 6 47 47 H 1.09004 * 109.87973 * 61.45443 * 26 8 6 48 48 H 1.08994 * 109.46804 * 183.95371 * 28 27 4 49 49 H 1.09001 * 109.47095 * 63.95196 * 28 27 4 50 50 H 1.08995 * 109.46752 * 303.95288 * 28 27 4 51 51 H 1.09003 * 109.47327 * 287.32394 * 29 27 4 52 52 H 1.09008 * 109.46677 * 47.32116 * 29 27 4 53 53 H 1.08997 * 109.47422 * 167.32140 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6018 -0.2647 2.1367 6 6 1.6469 -2.1747 1.1858 7 8 2.2964 -2.9500 0.5166 8 7 0.5733 -2.6130 1.8728 9 6 -0.3518 -1.7692 2.6511 10 6 -1.6753 -2.5770 2.7003 11 6 -1.1461 -4.0292 2.8363 12 1 -0.9092 -4.2576 3.8754 13 7 -2.1185 -4.9926 2.3030 14 6 -3.0293 -5.4594 3.3567 15 6 -4.0096 -6.4443 2.7735 16 8 -3.9550 -6.7289 1.5957 17 7 -4.9467 -7.0087 3.5606 18 6 -5.8381 -7.9051 3.0301 19 1 -5.7891 -8.1592 1.9815 20 6 -6.8041 -8.4875 3.8416 21 7 -6.8634 -8.1786 5.1175 22 14 -8.0191 -9.7083 3.1186 23 1 -7.7427 -9.8830 1.6701 24 1 -7.8785 -11.0151 3.8100 25 1 -9.4016 -9.1979 3.3012 26 6 0.1344 -4.0124 1.9752 27 7 3.5035 -0.6123 1.3143 28 6 4.0289 -1.2861 2.5093 29 6 4.1258 -1.1433 0.0942 30 1 -0.3634 0.4473 -0.9252 31 1 -0.3634 -1.0249 0.0752 32 1 -0.3634 0.5776 0.8500 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.0356 -1.6099 3.6573 38 1 -0.5088 -0.8148 2.1485 39 1 -2.2465 -2.4538 1.7802 40 1 -2.2714 -2.2954 3.5684 41 1 -1.6518 -5.7689 1.8584 42 1 -2.4541 -5.9438 4.1458 43 1 -3.5710 -4.6094 3.7716 44 1 -4.9900 -6.7813 4.5025 45 1 -7.5379 -8.5849 5.6840 46 1 -0.0813 -4.4069 0.9823 47 1 0.9116 -4.6107 2.4508 48 1 5.1060 -1.1305 2.5701 49 1 3.8190 -2.3539 2.4461 50 1 3.5515 -0.8740 3.3982 51 1 4.0508 -2.2307 0.0917 52 1 3.6126 -0.7417 -0.7797 53 1 5.1755 -0.8514 0.0651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183436222.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:35 Heat of formation + Delta-G solvation = -78.835567 kcal Electronic energy + Delta-G solvation = -30689.358210 eV Core-core repulsion = 26595.270136 eV Total energy + Delta-G solvation = -4094.088074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87286 -40.26995 -39.40090 -37.79255 -36.29021 -35.72877 -35.18208 -33.28249 -31.83656 -30.32909 -28.91924 -28.53625 -27.87395 -27.47228 -25.63171 -24.50984 -23.39582 -21.88684 -21.46743 -21.06203 -19.93571 -19.78688 -18.60524 -17.80029 -17.69634 -16.95638 -16.80623 -16.73109 -16.41058 -16.11167 -15.82045 -15.59033 -15.31460 -15.02829 -14.79253 -14.44017 -14.39088 -14.16917 -13.81229 -13.65573 -13.58255 -13.50111 -13.45752 -13.20353 -13.14328 -12.94002 -12.85558 -12.65597 -12.61207 -12.44498 -12.39523 -12.18147 -12.12230 -12.06779 -11.86889 -11.79142 -11.52598 -11.41113 -11.22308 -10.36585 -10.02410 -9.76664 -9.41157 -9.28637 -8.48028 -5.96374 1.35643 1.41355 1.45004 1.55159 1.83381 2.04280 2.28566 2.86017 2.89697 3.19419 3.25989 3.49255 3.63679 3.68628 3.72807 3.94834 4.08211 4.12947 4.25893 4.30780 4.32434 4.36249 4.39116 4.46581 4.49140 4.56333 4.57542 4.62481 4.64652 4.71252 4.76136 4.82618 4.86823 4.92161 4.94883 5.01224 5.08329 5.10864 5.22172 5.25970 5.28889 5.37283 5.40541 5.54836 5.82789 5.87180 5.89269 6.08226 6.25648 6.43991 6.59199 7.04045 7.11999 7.55378 8.11063 8.69429 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.027736 B = 0.001864 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.258467 B =15015.363506 C =15189.843937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 C -0.128 4.128 4 C 0.080 3.920 5 H 0.122 0.878 6 C 0.499 3.501 7 O -0.582 6.582 8 N -0.611 5.611 9 C 0.091 3.909 10 C -0.118 4.118 11 C 0.079 3.921 12 H 0.081 0.919 13 N -0.672 5.672 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.918 5.918 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.270 1.270 26 C 0.107 3.893 27 N -0.509 5.509 28 C 0.017 3.983 29 C 0.008 3.992 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.343 0.657 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.398 0.602 45 H 0.278 0.722 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.007 0.993 50 H 0.085 0.915 51 H 0.036 0.964 52 H 0.069 0.931 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.536 22.091 0.271 28.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 C -0.185 4.185 4 C -0.032 4.032 5 H 0.140 0.860 6 C 0.287 3.713 7 O -0.462 6.462 8 N -0.344 5.344 9 C -0.031 4.031 10 C -0.157 4.157 11 C -0.031 4.031 12 H 0.099 0.901 13 N -0.305 5.305 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.513 6.513 17 N -0.209 5.209 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.017 4.017 27 N -0.231 5.231 28 C -0.131 4.131 29 C -0.140 4.140 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.162 0.838 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.232 0.768 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.025 0.975 50 H 0.104 0.896 51 H 0.054 0.946 52 H 0.088 0.912 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.568 22.448 -0.927 29.146 hybrid contribution -0.345 -2.730 0.396 2.780 sum 18.222 19.718 -0.531 26.854 Atomic orbital electron populations 1.22025 0.93864 1.01500 1.03758 1.21132 0.96290 0.97882 0.94900 1.21653 1.01799 0.92754 1.02342 1.22162 0.90057 0.88470 1.02558 0.86009 1.22325 0.78748 0.92648 0.77551 1.90641 1.53594 1.59377 1.42548 1.48743 1.27222 1.08431 1.50039 1.22862 0.88007 0.95239 0.96977 1.22908 0.96437 0.92139 1.04191 1.22618 0.89168 0.94159 0.97119 0.90071 1.60170 1.21005 1.19856 1.29500 1.21588 0.94220 0.97573 0.93028 1.20922 0.84595 0.85249 0.86857 1.90506 1.75530 1.66836 1.18396 1.41919 1.28445 1.39008 1.11561 1.19675 1.10402 1.20257 0.95946 0.90529 1.26016 0.99619 0.99981 0.95619 1.69671 1.36334 1.44662 1.05257 0.84891 0.77747 0.77745 0.78076 1.19997 1.19606 1.19503 1.21923 0.95780 0.84110 0.99879 1.62612 1.02279 1.54489 1.03723 1.22521 1.02124 0.95513 0.92973 1.22691 0.99792 0.99232 0.92301 0.91359 0.94208 0.89846 0.92411 0.91892 0.92198 0.91363 0.88626 0.87944 0.91042 0.87635 0.83761 0.91203 0.87037 0.76834 0.91271 0.93036 0.91913 0.89758 0.97473 0.89632 0.94557 0.91197 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 7.71 71.98 0.55 -1.48 16 2 C -0.08 -1.22 1.90 -10.80 -0.02 -1.24 16 3 C -0.13 -1.40 8.89 71.98 0.64 -0.76 16 4 C 0.08 1.28 1.48 44.17 0.07 1.35 16 5 H 0.12 1.41 6.88 -2.39 -0.02 1.40 16 6 C 0.50 11.44 4.74 87.66 0.42 11.85 16 7 O -0.58 -18.28 13.65 -3.02 -0.04 -18.32 16 8 N -0.61 -12.35 3.00 -811.34 -2.43 -14.79 16 9 C 0.09 1.17 5.67 86.93 0.49 1.66 16 10 C -0.12 -1.97 6.79 32.07 0.22 -1.75 16 11 C 0.08 1.68 3.27 46.11 0.15 1.83 16 12 H 0.08 1.45 7.82 -2.39 -0.02 1.43 16 13 N -0.67 -20.19 5.97 -489.45 -2.92 -23.11 16 14 C 0.07 2.17 6.03 85.56 0.52 2.69 16 15 C 0.44 20.34 7.82 87.66 0.69 21.03 16 16 O -0.63 -34.75 15.78 -3.06 -0.05 -34.79 16 17 N -0.57 -28.84 5.29 -306.98 -1.62 -30.46 16 18 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 21 N -0.92 -48.86 13.05 21.66 0.28 -48.57 16 22 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 C 0.11 2.53 6.37 86.73 0.55 3.09 16 27 N -0.51 -8.47 4.13 -927.72 -3.84 -12.31 16 28 C 0.02 0.26 9.19 127.69 1.17 1.43 16 29 C 0.01 0.15 8.33 127.69 1.06 1.21 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.70 6.26 -2.39 -0.01 0.69 16 32 H 0.08 0.72 7.11 -2.39 -0.02 0.71 16 33 H 0.06 1.11 6.39 -2.38 -0.02 1.09 16 34 H 0.06 0.79 7.07 -2.39 -0.02 0.77 16 35 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.99 4.58 -2.39 -0.01 0.98 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.34 11.39 8.02 -89.69 -0.72 10.67 16 42 H 0.07 1.92 8.08 -2.38 -0.02 1.90 16 43 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.40 18.81 7.90 -92.71 -0.73 18.07 16 45 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 46 H 0.05 1.51 7.90 -2.39 -0.02 1.49 16 47 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.01 0.14 6.95 -2.39 -0.02 0.12 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.04 0.93 5.64 -2.39 -0.01 0.91 16 52 H 0.07 1.31 5.57 -2.38 -0.01 1.30 16 53 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -73.31 406.32 -1.33 -74.64 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -0.53 Total: 40.21 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 7.79 Total: 22.68 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -10.53 Total: -129.25 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.09 Total: -53.11 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -73.31 -1.33 -74.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183436222.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.196 kcal (2) G-P(sol) polarization free energy of solvation -73.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds