Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 H 1.09001 * 109.47281 * 177.97990 * 3 2 1 5 5 C 1.50699 * 109.47037 * 57.98373 * 3 2 1 6 6 O 1.21287 * 119.99965 * 267.04555 * 5 3 2 7 7 N 1.34780 * 120.00423 * 87.04045 * 5 3 2 8 8 C 1.47022 * 125.64268 * 355.61668 * 7 5 3 9 9 C 1.54326 * 107.27055 * 181.09222 * 8 7 5 10 10 C 1.55162 * 102.94231 * 22.19436 * 9 8 7 11 11 H 1.09001 * 111.03827 * 82.57997 * 10 9 8 12 12 N 1.46898 * 111.00496 * 206.42575 * 10 9 8 13 13 C 1.46903 * 111.00061 * 168.23873 * 12 10 9 14 14 C 1.46898 * 110.99873 * 292.19144 * 12 10 9 15 15 C 1.50700 * 109.47260 * 169.99991 * 14 12 10 16 16 O 1.21297 * 119.99753 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00123 * 180.02562 * 15 14 12 18 18 C 1.37093 * 119.99767 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00459 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99793 * 179.97438 * 18 17 15 21 21 N 1.31406 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00050 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47053 * 90.00280 * 22 20 18 24 24 H 1.48493 * 109.47328 * 210.00545 * 22 20 18 25 25 H 1.48495 * 109.47112 * 330.00610 * 22 20 18 26 26 C 1.47418 * 125.65176 * 175.65368 * 7 5 3 27 27 N 1.46903 * 109.46988 * 297.98700 * 3 2 1 28 28 C 1.46905 * 110.99636 * 182.03448 * 27 3 2 29 29 C 1.46897 * 110.99644 * 305.97976 * 27 3 2 30 30 H 1.09007 * 109.47291 * 302.25402 * 1 2 3 31 31 H 1.09002 * 109.46900 * 62.25053 * 1 2 3 32 32 H 1.08999 * 109.47349 * 182.24840 * 1 2 3 33 33 H 1.08998 * 109.47045 * 240.00073 * 2 1 3 34 34 H 1.09007 * 109.47089 * 119.99903 * 2 1 3 35 35 H 1.09002 * 109.88518 * 300.50681 * 8 7 5 36 36 H 1.09005 * 109.88278 * 61.67775 * 8 7 5 37 37 H 1.08998 * 110.71960 * 263.82856 * 9 8 7 38 38 H 1.09000 * 110.72100 * 140.55400 * 9 8 7 39 39 H 1.08998 * 109.47364 * 183.95162 * 13 12 10 40 40 H 1.09004 * 109.46725 * 63.95366 * 13 12 10 41 41 H 1.08994 * 109.46833 * 303.95554 * 13 12 10 42 42 H 1.08997 * 109.47175 * 290.00172 * 14 12 10 43 43 H 1.09007 * 109.46753 * 50.00199 * 14 12 10 44 44 H 0.96996 * 120.00065 * 0.02562 * 17 15 14 45 45 H 0.97004 * 119.99536 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.36922 * 37.00153 * 26 7 5 47 47 H 1.08996 * 110.37310 * 274.67470 * 26 7 5 48 48 H 1.08994 * 109.47154 * 64.10548 * 28 27 3 49 49 H 1.09001 * 109.46426 * 184.11027 * 28 27 3 50 50 H 1.09003 * 109.46907 * 304.10972 * 28 27 3 51 51 H 1.09005 * 109.46802 * 65.50704 * 29 27 3 52 52 H 1.09002 * 109.46807 * 185.50031 * 29 27 3 53 53 H 1.09002 * 109.47743 * 305.50608 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0362 5 6 1.4973 2.1672 1.2047 6 8 0.4664 2.8002 1.1181 7 7 2.1574 2.1118 2.3785 8 6 3.3617 1.3124 2.6473 9 6 3.7434 1.5417 4.1249 10 6 2.4083 2.0131 4.7596 11 1 1.7741 1.1636 5.0131 12 7 2.6538 2.8538 5.9390 13 6 1.4211 3.5243 6.3734 14 6 3.2392 2.0677 7.0332 15 6 3.7021 2.9956 8.1266 16 8 3.5580 4.1940 8.0064 17 7 4.2761 2.4940 9.2381 18 6 4.6976 3.3382 10.2326 19 1 4.5694 4.4052 10.1256 20 6 5.2889 2.8210 11.3788 21 7 5.4445 1.5227 11.5091 22 14 5.8627 3.9713 12.7342 23 1 4.7570 4.1864 13.7018 24 1 7.0244 3.3688 13.4359 25 1 6.2627 5.2731 12.1423 26 6 1.7910 2.8420 3.6056 27 7 1.5905 2.1208 -1.2231 28 6 2.1028 3.4964 -1.2807 29 6 1.9813 1.3630 -2.4192 30 1 -0.3634 0.5485 0.8691 31 1 -0.3633 0.4785 -0.9095 32 1 -0.3634 -1.0268 0.0403 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.1510 0.2564 2.4784 36 1 4.1753 1.6386 1.9993 37 1 4.5057 2.3160 4.2106 38 1 4.0820 0.6130 4.5843 39 1 1.6449 4.1939 7.2039 40 1 0.6950 2.7773 6.6944 41 1 1.0086 4.0991 5.5442 42 1 2.4895 1.3834 7.4304 43 1 4.0885 1.4974 6.6568 44 1 4.3916 1.5357 9.3341 45 1 5.8576 1.1617 12.3091 46 1 0.7070 2.8888 3.7099 47 1 2.2152 3.8459 3.5907 48 1 3.1907 3.4765 -1.3447 49 1 1.6962 3.9989 -2.1583 50 1 1.8016 4.0343 -0.3818 51 1 1.4542 0.4089 -2.4331 52 1 1.7232 1.9337 -3.3113 53 1 3.0563 1.1839 -2.4008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190889444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -43.239027 kcal Electronic energy + Delta-G solvation = -30762.786070 eV Core-core repulsion = 26670.241578 eV Total energy + Delta-G solvation = -4092.544492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72096 -39.09824 -38.05076 -36.98297 -35.47614 -33.85394 -33.36500 -31.27098 -31.02568 -29.52822 -28.17759 -27.59949 -27.26623 -25.34602 -24.05495 -23.53520 -22.88021 -21.46566 -20.25151 -19.24370 -18.99816 -17.86965 -17.48664 -16.76633 -16.55991 -16.02622 -15.76959 -15.23600 -14.99207 -14.74072 -14.51949 -14.16407 -14.11079 -13.82859 -13.76766 -13.57521 -13.50223 -13.39825 -12.90715 -12.81069 -12.62905 -12.58362 -12.39638 -12.23108 -11.92185 -11.86338 -11.71588 -11.52309 -11.44609 -11.36717 -11.20963 -11.11147 -11.03130 -10.94930 -10.79059 -10.40191 -10.23203 -9.81606 -9.49348 -8.80377 -8.67427 -8.49327 -8.00793 -7.90332 -6.43349 -3.83987 2.44140 2.62973 3.16633 3.25555 3.31368 3.57301 3.88435 3.92421 4.08012 4.21764 4.45161 4.49435 4.57735 4.61039 4.79776 4.84723 4.97771 5.00772 5.04417 5.12103 5.14998 5.17518 5.19660 5.26133 5.28439 5.32644 5.43157 5.53824 5.59181 5.63747 5.67325 5.69610 5.70696 5.77977 5.82551 5.85268 5.86664 5.93909 6.04374 6.10897 6.18623 6.26322 6.53371 6.55166 6.63143 7.17488 7.32573 7.34433 7.53932 8.03779 8.04856 8.60204 9.16786 9.52758 10.04613 10.74355 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.029480 B = 0.001930 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.576490 B =14507.373238 C =14681.846984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.071 3.929 4 H 0.059 0.941 5 C 0.536 3.464 6 O -0.517 6.517 7 N -0.620 5.620 8 C 0.102 3.898 9 C -0.126 4.126 10 C 0.069 3.931 11 H 0.055 0.945 12 N -0.507 5.507 13 C 0.019 3.981 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.117 3.883 27 N -0.522 5.522 28 C 0.021 3.979 29 C 0.023 3.977 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.024 0.976 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.071 0.929 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 -7.044 -24.338 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.040 4.040 4 H 0.077 0.923 5 C 0.324 3.676 6 O -0.392 6.392 7 N -0.356 5.356 8 C -0.022 4.022 9 C -0.164 4.164 10 C -0.041 4.041 11 H 0.073 0.927 12 N -0.231 5.231 13 C -0.129 4.129 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.461 6.461 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.005 4.005 27 N -0.247 5.247 28 C -0.127 4.127 29 C -0.125 4.125 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.042 0.958 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.090 0.910 53 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.430 -5.594 -24.509 25.719 hybrid contribution 0.883 -0.876 1.076 1.645 sum -4.547 -6.470 -23.433 24.731 Atomic orbital electron populations 1.21704 0.94091 1.00920 1.03689 1.21569 0.98164 0.92713 1.02741 1.21664 0.97778 0.95123 0.89480 0.92305 1.19999 0.83902 0.81111 0.82620 1.90716 1.22637 1.42200 1.83608 1.48487 1.28939 1.47041 1.11169 1.22101 0.87193 0.95444 0.97458 1.22738 0.98120 1.02898 0.92631 1.22781 0.95938 0.94477 0.90916 0.92706 1.61640 1.28081 1.28998 1.04361 1.22599 0.89008 0.98767 1.02533 1.21876 0.99572 0.95046 0.92017 1.19699 0.84403 0.89125 0.83826 1.90490 1.60061 1.15570 1.79959 1.41858 1.52863 1.09767 1.15595 1.19692 1.35539 0.92134 0.95398 0.87902 1.25260 0.97528 0.96357 0.98833 1.69610 1.44417 1.11025 1.29282 0.85860 0.78161 0.79937 0.80356 1.20444 1.20946 1.19407 1.22207 1.00444 0.95947 0.81928 1.61694 1.59905 1.02444 1.00634 1.22463 0.97001 0.89442 1.03746 1.22474 0.98442 0.99275 0.92329 0.92330 0.91306 0.93171 0.90577 0.91168 0.91341 0.91315 0.88885 0.89829 0.88240 0.96533 0.91981 0.93396 0.89307 0.77520 0.91891 0.90459 0.90078 0.95794 0.90894 0.90770 0.90742 0.91008 0.95519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.40 37.16 0.35 -0.98 16 2 C -0.11 -0.86 5.21 -26.73 -0.14 -1.00 16 3 C 0.07 0.65 1.66 -68.86 -0.11 0.54 16 4 H 0.06 0.47 7.25 -51.93 -0.38 0.10 16 5 C 0.54 6.46 4.97 -10.98 -0.05 6.41 16 6 O -0.52 -8.07 15.08 5.55 0.08 -7.99 16 7 N -0.62 -6.90 3.33 -170.51 -0.57 -7.46 16 8 C 0.10 0.86 6.24 -3.06 -0.02 0.84 16 9 C -0.13 -1.25 5.61 -24.89 -0.14 -1.39 16 10 C 0.07 0.84 2.71 -65.56 -0.18 0.66 16 11 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 12 N -0.51 -7.99 4.40 -233.74 -1.03 -9.02 16 13 C 0.02 0.30 8.98 60.07 0.54 0.84 16 14 C 0.05 0.78 5.36 -4.98 -0.03 0.76 16 15 C 0.44 10.15 7.51 -10.99 -0.08 10.06 16 16 O -0.58 -15.12 13.88 5.54 0.08 -15.04 16 17 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 18 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 22 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.12 1.46 5.07 -2.53 -0.01 1.45 16 27 N -0.52 -4.89 3.95 -244.58 -0.97 -5.85 16 28 C 0.02 0.20 9.27 60.07 0.56 0.76 16 29 C 0.02 0.15 8.90 60.06 0.53 0.68 16 30 H 0.06 0.68 6.57 -51.92 -0.34 0.34 16 31 H 0.07 0.67 7.63 -51.93 -0.40 0.28 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.45 6.33 -51.93 -0.33 0.12 16 34 H 0.07 0.48 7.27 -51.93 -0.38 0.10 16 35 H 0.07 0.47 7.27 -51.93 -0.38 0.09 16 36 H 0.07 0.50 7.78 -51.93 -0.40 0.10 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 39 H 0.10 1.93 5.88 -51.93 -0.31 1.63 16 40 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.88 6.76 -51.93 -0.35 0.53 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.09 1.33 7.01 -51.92 -0.36 0.96 16 44 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.08 1.02 7.80 -51.93 -0.40 0.62 16 47 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 48 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 50 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 51 H 0.07 0.43 6.38 -51.93 -0.33 0.10 16 52 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 53 H 0.03 0.15 8.13 -51.93 -0.42 -0.27 16 LS Contribution 408.85 15.07 6.16 6.16 Total: -1.00 -32.38 408.85 -8.78 -41.16 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -9.16 Total: 7.90 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 0.97 Total: 11.78 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -1.90 Total: -59.78 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.16 Total: -23.03 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.38 -8.78 -41.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190889444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.080 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds