Wall clock time and date at job start Sat Apr 11 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46881 * 2 1 4 4 H 1.09004 * 109.46525 * 184.01852 * 3 2 1 5 5 C 1.50695 * 109.47388 * 64.01976 * 3 2 1 6 6 O 1.21289 * 119.99959 * 250.92464 * 5 3 2 7 7 N 1.34774 * 120.00434 * 70.91831 * 5 3 2 8 8 C 1.47025 * 125.64303 * 4.12891 * 7 5 3 9 9 C 1.54330 * 107.26782 * 178.98817 * 8 7 5 10 10 C 1.55158 * 102.94136 * 337.80282 * 9 8 7 11 11 H 1.09000 * 111.00300 * 277.39193 * 10 9 8 12 12 N 1.46892 * 111.00237 * 153.57956 * 10 9 8 13 13 C 1.46897 * 111.00144 * 54.44389 * 12 10 9 14 14 C 1.46904 * 110.99903 * 178.39270 * 12 10 9 15 15 C 1.50701 * 109.47006 * 170.00225 * 14 12 10 16 16 O 1.21299 * 120.00304 * 359.97438 * 15 14 12 17 17 N 1.34777 * 119.99943 * 180.02562 * 15 14 12 18 18 C 1.37099 * 119.99922 * 180.27330 * 17 15 14 19 19 H 1.07997 * 120.00066 * 359.72357 * 18 17 15 20 20 C 1.38949 * 120.00052 * 179.71395 * 18 17 15 21 21 N 1.31410 * 119.99882 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00176 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46895 * 90.00533 * 22 20 18 24 24 H 1.48498 * 109.47608 * 210.00419 * 22 20 18 25 25 H 1.48500 * 109.47178 * 330.00732 * 22 20 18 26 26 C 1.47422 * 125.65267 * 184.18053 * 7 5 3 27 27 N 1.46898 * 109.47152 * 304.01554 * 3 2 1 28 28 C 1.46896 * 111.00114 * 185.31463 * 27 3 2 29 29 C 1.46905 * 111.00397 * 309.27010 * 27 3 2 30 30 H 1.09001 * 109.47207 * 184.47995 * 1 2 3 31 31 H 1.09003 * 109.47168 * 304.48835 * 1 2 3 32 32 H 1.09003 * 109.46866 * 64.48406 * 1 2 3 33 33 H 1.08996 * 109.47007 * 239.99951 * 2 1 3 34 34 H 1.09000 * 109.47035 * 119.99241 * 2 1 3 35 35 H 1.08993 * 109.88712 * 59.56693 * 8 7 5 36 36 H 1.08998 * 110.00888 * 298.47034 * 8 7 5 37 37 H 1.09004 * 110.71683 * 219.44641 * 9 8 7 38 38 H 1.08994 * 110.72323 * 96.17177 * 9 8 7 39 39 H 1.09005 * 109.47645 * 188.79008 * 13 12 10 40 40 H 1.09008 * 109.47033 * 308.78805 * 13 12 10 41 41 H 1.08998 * 109.47821 * 68.78771 * 13 12 10 42 42 H 1.09000 * 109.46954 * 50.00770 * 14 12 10 43 43 H 1.08994 * 109.47139 * 289.99699 * 14 12 10 44 44 H 0.96997 * 119.99943 * 359.97438 * 17 15 14 45 45 H 0.97006 * 120.00412 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.36745 * 85.24337 * 26 7 5 47 47 H 1.09001 * 110.36282 * 322.92053 * 26 7 5 48 48 H 1.08996 * 109.47477 * 64.70913 * 28 27 3 49 49 H 1.09006 * 109.46979 * 184.71009 * 28 27 3 50 50 H 1.08995 * 109.47072 * 304.70837 * 28 27 3 51 51 H 1.09006 * 109.46848 * 66.83196 * 29 27 3 52 52 H 1.08990 * 109.47385 * 186.83831 * 29 27 3 53 53 H 1.09005 * 109.46885 * 306.84049 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1276 1.4434 -0.0720 5 6 1.6206 2.1237 1.2772 6 8 0.7656 2.9836 1.2534 7 7 2.1955 1.7772 2.4459 8 6 3.2980 0.8180 2.6073 9 6 3.6398 0.7617 4.1112 10 6 3.0917 2.1123 4.6429 11 1 3.8046 2.9186 4.4699 12 7 2.7456 2.0159 6.0672 13 6 3.8867 1.5306 6.8546 14 6 2.2625 3.3050 6.5800 15 6 1.6899 3.1136 7.9608 16 8 1.6843 2.0117 8.4677 17 7 1.1831 4.1667 8.6320 18 6 0.6673 3.9936 9.8905 19 1 0.6630 3.0126 10.3421 20 6 0.1501 5.0803 10.5849 21 7 0.1550 6.2740 10.0353 22 14 -0.5533 4.8444 12.2992 23 1 0.5228 5.0299 13.3056 24 1 -1.6284 5.8413 12.5347 25 1 -1.1134 3.4744 12.4202 26 6 1.8224 2.2964 3.7742 27 7 1.4727 2.1625 -1.1480 28 6 2.0378 3.5143 -1.2532 29 6 1.6737 1.4095 -2.3933 30 1 -0.3634 -1.0245 0.0803 31 1 -0.3634 0.5819 0.8471 32 1 -0.3633 0.4427 -0.9275 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 4.1672 1.1537 2.0418 36 1 2.9884 -0.1678 2.2604 37 1 4.7178 0.6979 4.2595 38 1 3.1332 -0.0758 4.5907 39 1 3.5619 1.3200 7.8736 40 1 4.2788 0.6194 6.4026 41 1 4.6665 2.2920 6.8720 42 1 1.4894 3.6932 5.9167 43 1 3.0911 4.0117 6.6251 44 1 1.1872 5.0479 8.2266 45 1 -0.2063 7.0326 10.5199 46 1 0.9934 1.7215 4.1871 47 1 1.5576 3.3517 3.7083 48 1 3.1048 3.4466 -1.4651 49 1 1.5408 4.0542 -2.0593 50 1 1.8870 4.0453 -0.3133 51 1 1.0861 0.4920 -2.3619 52 1 1.3547 2.0166 -3.2404 53 1 2.7296 1.1612 -2.5013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190889445.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:51 Heat of formation + Delta-G solvation = -40.315013 kcal Electronic energy + Delta-G solvation = -30912.669035 eV Core-core repulsion = 26820.251338 eV Total energy + Delta-G solvation = -4092.417698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69799 -39.07775 -38.02142 -36.98552 -35.48644 -33.83322 -33.31566 -31.27090 -30.93526 -29.43021 -28.05453 -27.84651 -27.31369 -24.97663 -24.15331 -23.54579 -23.01583 -21.33040 -20.24092 -19.24989 -19.01512 -17.84502 -17.41520 -16.92500 -16.24215 -15.88947 -15.73920 -15.43346 -14.92091 -14.64272 -14.54225 -14.45265 -14.03988 -13.83418 -13.79706 -13.58139 -13.39576 -13.25848 -12.99977 -12.76523 -12.61420 -12.50201 -12.39832 -12.10011 -11.84391 -11.81453 -11.63853 -11.49797 -11.43594 -11.36354 -11.26089 -11.14726 -10.98770 -10.95246 -10.74522 -10.37610 -10.20169 -9.77840 -9.46550 -8.75938 -8.61957 -8.48518 -7.97962 -7.88001 -6.39843 -3.80711 2.51525 2.65573 3.18975 3.27764 3.33634 3.60558 3.90655 3.94278 4.11638 4.23610 4.41587 4.47582 4.57658 4.63327 4.81881 4.85871 4.97433 5.02613 5.05597 5.11034 5.17982 5.18839 5.23222 5.27441 5.29301 5.36274 5.48675 5.54150 5.58824 5.61901 5.69909 5.71957 5.77913 5.78108 5.86759 5.87882 5.88886 5.92875 6.05041 6.12392 6.19521 6.29125 6.53140 6.59274 6.69728 7.19085 7.31334 7.39848 7.56917 8.07826 8.09125 8.63352 9.19754 9.56123 10.07723 10.77881 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.002174 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.623189 B =12877.678298 C =13547.482600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.072 3.928 4 H 0.060 0.940 5 C 0.535 3.465 6 O -0.516 6.516 7 N -0.619 5.619 8 C 0.100 3.900 9 C -0.124 4.124 10 C 0.069 3.931 11 H 0.054 0.946 12 N -0.506 5.506 13 C 0.022 3.978 14 C 0.043 3.957 15 C 0.445 3.555 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.115 3.885 27 N -0.521 5.521 28 C 0.021 3.979 29 C 0.022 3.978 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.020 0.980 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.070 0.930 53 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.305 -10.082 -23.584 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.040 4.040 4 H 0.078 0.922 5 C 0.322 3.678 6 O -0.390 6.390 7 N -0.355 5.355 8 C -0.023 4.023 9 C -0.162 4.162 10 C -0.041 4.041 11 H 0.072 0.928 12 N -0.231 5.231 13 C -0.125 4.125 14 C -0.088 4.088 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.007 4.007 27 N -0.246 5.246 28 C -0.127 4.127 29 C -0.126 4.126 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.039 0.961 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.089 0.911 53 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.823 -10.434 -23.136 26.558 hybrid contribution 1.317 1.139 0.384 1.783 sum 9.140 -9.295 -22.752 26.222 Atomic orbital electron populations 1.21701 0.94054 1.01091 1.03490 1.21654 0.98211 0.92823 1.02857 1.21616 0.97476 0.94890 0.90011 0.92194 1.20016 0.81650 0.82699 0.83405 1.90724 1.31287 1.31285 1.85736 1.48424 1.36339 1.44203 1.06569 1.22133 0.89473 0.93132 0.97607 1.22735 1.01611 0.98629 0.93227 1.22774 0.95386 0.96814 0.89151 0.92780 1.61605 1.34503 1.27236 0.99730 1.22569 0.90423 0.98385 1.01158 1.21937 0.99772 0.90041 0.97056 1.19668 0.84641 0.85635 0.87015 1.90477 1.61258 1.24712 1.69782 1.41865 1.53120 1.09173 1.15881 1.19687 1.35431 0.96472 0.91185 0.87898 1.25267 0.97799 0.94730 1.00204 1.69614 1.46474 0.99464 1.38717 0.85859 0.78503 0.78255 0.81674 1.20467 1.20933 1.19400 1.22231 0.97408 1.00423 0.80670 1.61649 1.58262 1.02669 1.02007 1.22493 0.96289 0.89952 1.03942 1.22493 0.99406 0.99300 0.91378 0.92996 0.92405 0.91384 0.90791 0.90753 0.91658 0.90950 0.90043 0.88940 0.88307 0.92012 0.96592 0.89344 0.93339 0.77487 0.91871 0.89842 0.90389 0.96142 0.91034 0.90182 0.90683 0.91098 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.33 37.16 0.35 -1.01 16 2 C -0.12 -0.90 5.03 -26.73 -0.13 -1.04 16 3 C 0.07 0.67 1.56 -68.86 -0.11 0.57 16 4 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 5 C 0.53 6.73 5.39 -10.99 -0.06 6.68 16 6 O -0.52 -8.54 15.10 5.55 0.08 -8.45 16 7 N -0.62 -7.06 3.33 -170.52 -0.57 -7.63 16 8 C 0.10 0.81 6.13 -3.06 -0.02 0.79 16 9 C -0.12 -1.13 4.99 -24.89 -0.12 -1.26 16 10 C 0.07 0.84 2.71 -65.57 -0.18 0.66 16 11 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 12 N -0.51 -8.00 4.40 -233.75 -1.03 -9.02 16 13 C 0.02 0.33 9.02 60.06 0.54 0.88 16 14 C 0.04 0.77 5.36 -4.97 -0.03 0.74 16 15 C 0.45 10.42 7.54 -10.98 -0.08 10.33 16 16 O -0.58 -15.28 13.88 5.54 0.08 -15.20 16 17 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 22 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.12 1.52 5.70 -2.53 -0.01 1.51 16 27 N -0.52 -5.09 3.86 -244.58 -0.94 -6.04 16 28 C 0.02 0.20 9.23 60.06 0.55 0.76 16 29 C 0.02 0.15 8.51 60.07 0.51 0.66 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.70 7.19 -51.93 -0.37 0.33 16 32 H 0.07 0.65 6.53 -51.93 -0.34 0.31 16 33 H 0.07 0.43 6.72 -51.93 -0.35 0.09 16 34 H 0.07 0.52 5.75 -51.93 -0.30 0.23 16 35 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.07 0.48 6.04 -51.93 -0.31 0.17 16 37 H 0.08 0.61 7.94 -51.93 -0.41 0.20 16 38 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.10 1.85 5.98 -51.93 -0.31 1.54 16 40 H 0.06 0.75 6.51 -51.92 -0.34 0.42 16 41 H 0.02 0.22 8.08 -51.93 -0.42 -0.20 16 42 H 0.09 1.48 7.03 -51.93 -0.37 1.11 16 43 H 0.05 0.79 8.07 -51.93 -0.42 0.38 16 44 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.12 7.70 -51.93 -0.40 0.72 16 48 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 49 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 50 H 0.08 0.96 6.14 -51.93 -0.32 0.64 16 51 H 0.07 0.46 5.69 -51.93 -0.30 0.17 16 52 H 0.07 0.43 8.06 -51.93 -0.42 0.02 16 53 H 0.02 0.15 8.11 -51.93 -0.42 -0.27 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -33.07 405.07 -8.65 -41.72 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.98 Total: 8.49 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 0.97 Total: 12.29 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -1.87 Total: -61.09 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.16 Total: -23.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.07 -8.65 -41.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190889445.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.405 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds