Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 N 1.46493 * 109.47267 * 119.99733 * 2 1 3 5 5 C 1.34787 * 119.99653 * 85.00059 * 4 2 1 6 6 O 1.21277 * 119.99818 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99723 * 180.02562 * 5 4 2 8 8 N 1.46898 * 109.46845 * 180.02562 * 7 5 4 9 9 C 1.46906 * 110.99885 * 293.95120 * 8 7 5 10 10 C 1.46905 * 110.99935 * 170.00110 * 8 7 5 11 11 C 1.50696 * 109.46960 * 189.99695 * 10 8 7 12 12 O 1.21283 * 120.00046 * 359.97438 * 11 10 8 13 13 N 1.34778 * 119.99846 * 180.27019 * 11 10 8 14 14 C 1.47020 * 125.64801 * 359.41809 * 13 11 10 15 15 C 1.54338 * 107.26346 * 178.84557 * 14 13 11 16 16 C 1.55158 * 103.02239 * 338.14187 * 15 14 13 17 17 H 1.08999 * 111.00050 * 277.23087 * 16 15 14 18 18 N 1.46493 * 111.03221 * 153.39388 * 16 15 14 19 19 C 1.46498 * 120.00522 * 307.78241 * 18 16 15 20 20 C 1.36942 * 119.99874 * 127.78894 * 18 16 15 21 21 H 1.08001 * 119.99596 * 328.50300 * 20 18 16 22 22 C 1.38813 * 120.00183 * 148.50572 * 20 18 16 23 23 N 1.31614 * 120.00051 * 153.83493 * 22 20 18 24 24 Si 1.86802 * 119.99804 * 333.82314 * 22 20 18 25 25 H 1.48506 * 109.46732 * 94.89773 * 24 22 20 26 26 H 1.48495 * 109.47145 * 214.89381 * 24 22 20 27 27 H 1.48499 * 109.47425 * 334.90186 * 24 22 20 28 28 C 1.47422 * 125.64842 * 179.72618 * 13 11 10 29 29 H 1.08997 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47196 * 300.00175 * 1 2 3 31 31 H 1.09003 * 109.46860 * 60.00041 * 1 2 3 32 32 H 1.09003 * 109.46652 * 240.00317 * 2 1 3 33 33 H 1.09001 * 109.46999 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47281 * 299.99702 * 3 2 1 35 35 H 1.08999 * 109.47288 * 59.99882 * 3 2 1 36 36 H 0.96998 * 120.00291 * 264.99908 * 4 2 1 37 37 H 1.08994 * 109.47343 * 59.99739 * 7 5 4 38 38 H 1.09008 * 109.46994 * 299.99743 * 7 5 4 39 39 H 1.09000 * 109.46636 * 296.04978 * 9 8 7 40 40 H 1.08996 * 109.47181 * 56.04552 * 9 8 7 41 41 H 1.08996 * 109.47364 * 176.04796 * 9 8 7 42 42 H 1.08994 * 109.47248 * 69.99558 * 10 8 7 43 43 H 1.09003 * 109.46564 * 309.99210 * 10 8 7 44 44 H 1.08993 * 109.88148 * 298.39525 * 14 13 11 45 45 H 1.09004 * 109.87993 * 59.55679 * 14 13 11 46 46 H 1.09001 * 110.84723 * 219.67206 * 15 14 13 47 47 H 1.08999 * 110.66687 * 96.53012 * 15 14 13 48 48 H 1.09006 * 109.46822 * 95.54890 * 19 18 16 49 49 H 1.08997 * 109.47558 * 215.54709 * 19 18 16 50 50 H 1.08998 * 109.47073 * 335.54847 * 19 18 16 51 51 H 0.97002 * 120.00010 * 180.02562 * 23 22 20 52 52 H 1.09008 * 110.36740 * 322.93217 * 28 13 11 53 53 H 1.08997 * 110.37111 * 85.25274 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1471 -2.0322 1.1943 6 8 1.8582 -2.6677 0.2026 7 6 2.6490 -2.7426 2.4250 8 7 2.6991 -4.1884 2.1695 9 6 1.3497 -4.7358 1.9758 10 6 3.4015 -4.8902 3.2522 11 6 3.6495 -6.3200 2.8459 12 8 3.2774 -6.7156 1.7614 13 7 4.2796 -7.1608 3.6900 14 6 4.7862 -6.8136 5.0258 15 6 5.4015 -8.0939 5.6293 16 6 4.7098 -9.2266 4.8257 17 1 3.7290 -9.4577 5.2414 18 7 5.5512 -10.4248 4.7752 19 6 6.9429 -10.3243 4.3288 20 6 5.0368 -11.6388 5.1451 21 1 4.2740 -11.6922 5.9078 22 6 5.4958 -12.8007 4.5399 23 7 5.4299 -13.9475 5.1823 24 14 6.2067 -12.7364 2.8137 25 1 7.6846 -12.6124 2.8913 26 1 5.8521 -13.9812 2.0857 27 1 5.6490 -11.5647 2.0918 28 6 4.5806 -8.5793 3.4243 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.2491 -0.1822 1.9894 37 1 1.9761 -2.5438 3.2591 38 1 3.6482 -2.3825 2.6704 39 1 0.7761 -4.6224 2.8958 40 1 0.8519 -4.1983 1.1688 41 1 1.4197 -5.7928 1.7193 42 1 2.7908 -4.8697 4.1547 43 1 4.3540 -4.3973 3.4466 44 1 5.5470 -6.0375 4.9434 45 1 3.9662 -6.4666 5.6545 46 1 5.1658 -8.1745 6.6905 47 1 6.4801 -8.1131 5.4728 48 1 7.5966 -10.2292 5.1959 49 1 7.2105 -11.2203 3.7687 50 1 7.0572 -9.4488 3.6897 51 1 5.7510 -14.7594 4.7595 52 1 3.7663 -9.0419 2.8664 53 1 5.5179 -8.6720 2.8757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191143402.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -46.272158 kcal Electronic energy + Delta-G solvation = -30208.711715 eV Core-core repulsion = 26116.035696 eV Total energy + Delta-G solvation = -4092.676019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31493 -40.78279 -39.19353 -37.62717 -36.68377 -36.50196 -33.83759 -32.73147 -31.82227 -30.26311 -29.12500 -28.67854 -28.09399 -28.07457 -25.66285 -24.24736 -23.52879 -22.06628 -21.38431 -20.98871 -20.16647 -19.03346 -18.41477 -18.00848 -17.80496 -17.10055 -17.05356 -16.69428 -16.29481 -16.13851 -15.76284 -15.36289 -15.25037 -14.91656 -14.84060 -14.67507 -14.50144 -14.36846 -14.08543 -13.99227 -13.88299 -13.52702 -13.47643 -13.24228 -13.15759 -13.06978 -12.88097 -12.63092 -12.57189 -12.52405 -12.38215 -12.25966 -12.25243 -12.04539 -11.90334 -11.58874 -11.42408 -11.02253 -10.63990 -10.59065 -10.06335 -9.63291 -9.28217 -8.89227 -8.25127 -5.54779 1.24829 1.39684 1.48311 1.66344 1.70893 1.78718 2.22769 2.37017 2.98849 3.03640 3.30026 3.54750 3.79757 3.86757 3.99437 4.03434 4.15164 4.15722 4.21399 4.29315 4.31885 4.33379 4.36688 4.41868 4.45966 4.51963 4.57085 4.60897 4.70204 4.73746 4.76561 4.77115 4.91288 4.93809 4.97039 5.00833 5.03983 5.15441 5.24377 5.27091 5.30302 5.32654 5.39309 5.61696 5.86005 5.87416 5.92355 6.11817 6.62396 6.67664 6.90412 7.23985 7.38998 7.58572 7.97396 8.94616 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.001896 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.248844 B =14760.869808 C =15119.899461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.151 4.151 4 N -0.715 5.715 5 C 0.506 3.494 6 O -0.572 6.572 7 C 0.040 3.960 8 N -0.540 5.540 9 C 0.026 3.974 10 C 0.055 3.945 11 C 0.515 3.485 12 O -0.580 6.580 13 N -0.617 5.617 14 C 0.106 3.894 15 C -0.137 4.137 16 C 0.164 3.836 17 H 0.073 0.927 18 N -0.608 5.608 19 C 0.108 3.892 20 C -0.259 4.259 21 H 0.055 0.945 22 C -0.017 4.017 23 N -0.940 5.940 24 Si 0.938 3.062 25 H -0.269 1.269 26 H -0.312 1.312 27 H -0.274 1.274 28 C 0.092 3.908 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.417 0.583 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.140 0.860 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.037 0.963 49 H 0.018 0.982 50 H 0.063 0.937 51 H 0.263 0.737 52 H 0.038 0.962 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 37.206 0.188 37.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.028 3.972 3 C -0.208 4.208 4 N -0.369 5.369 5 C 0.293 3.707 6 O -0.450 6.450 7 C -0.090 4.090 8 N -0.265 5.265 9 C -0.122 4.122 10 C -0.075 4.075 11 C 0.305 3.695 12 O -0.459 6.459 13 N -0.352 5.352 14 C -0.016 4.016 15 C -0.176 4.176 16 C 0.056 3.944 17 H 0.091 0.909 18 N -0.330 5.330 19 C -0.035 4.035 20 C -0.389 4.389 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.584 5.584 24 Si 0.768 3.232 25 H -0.197 1.197 26 H -0.241 1.241 27 H -0.200 1.200 28 C -0.034 4.034 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.254 0.746 37 H 0.115 0.885 38 H 0.156 0.844 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.157 0.843 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.055 0.945 49 H 0.036 0.964 50 H 0.082 0.918 51 H 0.072 0.928 52 H 0.056 0.944 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.381 36.379 -1.565 36.675 hybrid contribution -0.247 -1.011 -0.352 1.098 sum -4.627 35.368 -1.917 35.721 Atomic orbital electron populations 1.22140 0.95235 1.01051 1.03283 1.20946 0.94220 0.94094 0.87985 1.22007 1.01780 0.92902 1.04125 1.45985 1.67316 1.06133 1.17489 1.21065 0.76957 0.82814 0.89895 1.90715 1.50702 1.66801 1.36781 1.22112 1.05348 0.86858 0.94659 1.61100 1.19140 1.02678 1.43532 1.22447 0.88354 1.00931 1.00434 1.22002 1.02772 0.89406 0.93341 1.21065 0.76666 0.88571 0.83234 1.90694 1.52462 1.78513 1.24211 1.48600 1.57585 1.10339 1.18631 1.22300 0.99952 0.97868 0.81435 1.23029 1.00969 0.92845 1.00779 1.21696 0.94589 0.86137 0.92015 0.90902 1.44116 1.07301 1.03984 1.77643 1.21377 0.85153 0.98999 0.98007 1.18766 1.21775 0.83299 1.15039 0.92723 1.25843 1.00235 0.94924 1.00444 1.69997 1.50652 1.00070 1.37650 0.86008 0.78173 0.75750 0.83228 1.19684 1.24116 1.19964 1.22691 0.99063 0.81566 1.00092 0.95076 0.90897 0.90765 0.92518 0.91777 0.90355 0.90245 0.74568 0.88450 0.84394 0.94355 0.91535 0.92956 0.88514 0.84250 0.88088 0.88542 0.88697 0.90289 0.94471 0.96440 0.91801 0.92751 0.94364 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.48 71.98 0.68 -1.17 16 2 C 0.13 1.54 3.18 44.99 0.14 1.68 16 3 C -0.15 -0.74 9.38 71.98 0.68 -0.06 16 4 N -0.71 -7.35 5.08 -442.52 -2.25 -9.60 16 5 C 0.51 9.19 7.49 87.66 0.66 9.85 16 6 O -0.57 -17.26 13.99 -3.02 -0.04 -17.30 16 7 C 0.04 0.49 5.45 85.56 0.47 0.95 16 8 N -0.54 -11.94 4.24 -931.64 -3.95 -15.89 16 9 C 0.03 0.69 8.85 127.69 1.13 1.82 16 10 C 0.05 0.95 4.64 85.55 0.40 1.35 16 11 C 0.51 15.22 7.57 87.66 0.66 15.88 16 12 O -0.58 -23.95 14.56 -3.04 -0.04 -24.00 16 13 N -0.62 -17.19 3.33 -811.78 -2.70 -19.89 16 14 C 0.11 1.89 6.49 86.73 0.56 2.45 16 15 C -0.14 -3.35 6.50 31.79 0.21 -3.14 16 16 C 0.16 5.94 3.53 46.38 0.16 6.11 16 17 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 18 N -0.61 -27.56 2.62 -695.03 -1.82 -29.38 16 19 C 0.11 4.43 8.33 127.77 1.06 5.49 16 20 C -0.26 -14.44 9.89 84.03 0.83 -13.61 16 21 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 22 C -0.02 -1.02 5.29 84.86 0.45 -0.57 16 23 N -0.94 -58.41 13.97 21.65 0.30 -58.11 16 24 Si 0.94 47.58 25.07 68.60 1.72 49.30 16 25 H -0.27 -12.81 6.62 99.48 0.66 -12.15 16 26 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 27 H -0.27 -13.90 7.11 99.48 0.71 -13.19 16 28 C 0.09 3.37 6.46 86.86 0.56 3.93 16 29 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.03 7.58 -2.39 -0.02 1.02 16 33 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.08 0.32 8.14 -2.39 -0.02 0.31 16 35 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.42 1.02 8.60 -92.71 -0.80 0.22 16 37 H 0.10 0.57 8.12 -2.39 -0.02 0.55 16 38 H 0.14 0.73 7.93 -2.38 -0.02 0.71 16 39 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 1.97 5.82 -2.39 -0.01 1.96 16 41 H 0.05 1.78 5.88 -2.39 -0.01 1.76 16 42 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 43 H 0.14 1.40 7.93 -2.39 -0.02 1.38 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 45 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.08 1.92 6.99 -2.39 -0.02 1.90 16 48 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 49 H 0.02 0.80 2.55 -2.39 -0.01 0.79 16 50 H 0.06 2.23 6.37 -2.39 -0.02 2.21 16 51 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 52 H 0.04 1.65 8.04 -2.38 -0.02 1.63 16 53 H 0.05 2.02 6.43 -2.39 -0.02 2.01 16 Total: -1.00 -87.52 410.49 -0.07 -87.59 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.05 Total: 6.33 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 8.65 Total: 30.96 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -10.41 Total: -132.88 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.09 Total: -41.30 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.72 Total: 49.30 kcal Total: -87.52 -0.07 -87.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191143402.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.318 kcal (2) G-P(sol) polarization free energy of solvation -87.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds