Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47234 * 2 1 4 4 N 1.46899 * 109.47227 * 179.97438 * 3 2 1 5 5 C 1.46902 * 110.99838 * 293.95419 * 4 3 2 6 6 C 1.46897 * 110.99986 * 169.99948 * 4 3 2 7 7 C 1.50696 * 109.47108 * 190.00214 * 6 4 3 8 8 O 1.21282 * 120.00151 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99919 * 180.02562 * 7 6 4 10 10 C 1.47020 * 125.64942 * 0.03694 * 9 7 6 11 11 C 1.54366 * 107.28976 * 178.87216 * 10 9 7 12 12 C 1.55157 * 102.92392 * 337.86365 * 11 10 9 13 13 H 1.08996 * 111.00484 * 277.36153 * 12 11 10 14 14 N 1.46892 * 111.00742 * 153.54291 * 12 11 10 15 15 C 1.46903 * 111.00067 * 60.53373 * 14 12 11 16 16 C 1.46902 * 111.00147 * 184.48558 * 14 12 11 17 17 C 1.50699 * 109.47373 * 170.00188 * 16 14 12 18 18 O 1.21293 * 119.99838 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00384 * 179.97438 * 17 16 14 20 20 C 1.37095 * 120.00421 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99893 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00441 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99841 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00293 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47051 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47065 * 120.00191 * 24 22 20 27 27 H 1.48503 * 109.47254 * 240.00437 * 24 22 20 28 28 C 1.47423 * 125.64874 * 179.97438 * 9 7 6 29 29 H 1.09005 * 109.46612 * 60.00198 * 1 2 3 30 30 H 1.08995 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47207 * 300.00465 * 1 2 3 32 32 H 1.09002 * 109.47609 * 239.99732 * 2 1 3 33 33 H 1.09004 * 109.47135 * 119.99825 * 2 1 3 34 34 H 1.09000 * 109.46689 * 59.99779 * 3 2 1 35 35 H 1.08995 * 109.46676 * 299.99769 * 3 2 1 36 36 H 1.08994 * 109.46873 * 296.04424 * 5 4 3 37 37 H 1.09005 * 109.47177 * 56.04781 * 5 4 3 38 38 H 1.09004 * 109.47018 * 176.04656 * 5 4 3 39 39 H 1.09005 * 109.46947 * 69.99824 * 6 4 3 40 40 H 1.09008 * 109.47001 * 310.00141 * 6 4 3 41 41 H 1.09001 * 109.88351 * 298.32482 * 10 9 7 42 42 H 1.09001 * 109.87968 * 59.33545 * 10 9 7 43 43 H 1.08998 * 110.75863 * 219.49427 * 11 10 9 44 44 H 1.08994 * 110.70501 * 96.20745 * 11 10 9 45 45 H 1.08996 * 109.47342 * 178.47818 * 15 14 12 46 46 H 1.09005 * 109.46922 * 58.47720 * 15 14 12 47 47 H 1.08995 * 109.47042 * 298.47855 * 15 14 12 48 48 H 1.09000 * 109.46986 * 290.00273 * 16 14 12 49 49 H 1.08995 * 109.46970 * 50.00243 * 16 14 12 50 50 H 0.97001 * 119.99790 * 0.02562 * 19 17 16 51 51 H 0.96996 * 119.99791 * 179.97438 * 23 22 20 52 52 H 1.08997 * 110.36767 * 85.32301 * 28 9 7 53 53 H 1.09003 * 110.46068 * 323.05129 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0349 0.8859 1.2543 6 6 4.0356 2.7931 -0.2375 7 6 5.5219 2.7182 -0.4743 8 8 6.0871 1.6455 -0.4468 9 7 6.2234 3.8435 -0.7155 10 6 5.6678 5.2034 -0.7748 11 6 6.8424 6.1674 -1.0468 12 6 8.0748 5.3574 -0.5647 13 1 8.2015 5.4440 0.5145 14 7 9.2918 5.7803 -1.2704 15 6 9.5749 7.2010 -1.0268 16 6 10.4378 4.9427 -0.8920 17 6 11.5995 5.2385 -1.8051 18 8 11.4843 6.0660 -2.6844 19 7 12.7668 4.5844 -1.6442 20 6 13.8235 4.8531 -2.4753 21 1 13.7207 5.5894 -3.2588 22 6 15.0271 4.1791 -2.3090 23 7 15.1524 3.2836 -1.3554 24 14 16.4671 4.5458 -3.4409 25 1 16.0716 5.5864 -4.4238 26 1 17.6160 5.0355 -2.6376 27 1 16.8586 3.3074 -4.1610 28 6 7.6751 3.9148 -0.9623 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7435 1.5265 2.0866 37 1 3.6292 -0.1143 1.4061 38 1 5.1223 0.8326 1.2002 39 1 3.8372 3.4190 0.6326 40 1 3.5494 3.2235 -1.1131 41 1 4.9380 5.2708 -1.5816 42 1 5.1943 5.4521 0.1750 43 1 6.7323 7.0838 -0.4669 44 1 6.9196 6.3901 -2.1109 45 1 10.4955 7.4811 -1.5388 46 1 9.6887 7.3704 0.0440 47 1 8.7506 7.8057 -1.4047 48 1 10.7212 5.1587 0.1382 49 1 10.1644 3.8913 -0.9808 50 1 12.8590 3.9228 -0.9408 51 1 15.9925 2.8128 -1.2396 52 1 7.8898 3.7387 -2.0163 53 1 8.2030 3.1902 -0.3422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193623047.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = -73.676643 kcal Electronic energy + Delta-G solvation = -29916.054136 eV Core-core repulsion = 25822.189770 eV Total energy + Delta-G solvation = -4093.864367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34245 -40.39493 -39.27284 -38.07879 -36.71267 -35.78086 -34.08671 -33.29040 -32.12317 -30.48269 -29.30657 -28.83059 -27.88427 -26.73266 -25.38848 -24.21591 -23.48383 -21.66623 -21.40550 -20.90775 -20.16314 -19.82833 -18.36585 -17.87302 -17.58640 -16.92344 -16.60763 -16.50868 -16.40815 -16.11009 -15.94642 -15.68641 -15.35666 -15.08308 -15.01862 -14.70563 -14.58800 -14.21296 -13.96539 -13.78607 -13.62343 -13.52799 -13.41605 -13.09570 -12.94802 -12.82256 -12.78213 -12.64921 -12.57024 -12.42319 -12.36855 -12.33288 -12.11550 -11.94952 -11.87183 -11.81908 -11.46290 -11.44623 -10.81840 -10.28857 -10.00494 -9.68142 -9.28887 -9.26088 -8.46678 -5.95537 1.36310 1.41316 1.55788 1.61018 1.78285 2.04422 2.28218 2.74151 2.98224 3.19879 3.29961 3.42392 3.67254 3.77432 3.96932 4.04628 4.13951 4.17607 4.24650 4.28571 4.29379 4.34370 4.39317 4.47837 4.48620 4.52898 4.55682 4.58382 4.63005 4.70172 4.74432 4.80021 4.84556 4.88360 4.90334 5.01065 5.09083 5.18378 5.20844 5.25400 5.29926 5.31158 5.41277 5.43952 5.84296 5.93574 6.04175 6.10439 6.19606 6.53263 6.59808 7.12666 7.17496 7.55806 8.11098 8.71080 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.001881 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.559316 B =14883.355598 C =15981.304436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.059 3.941 4 N -0.551 5.551 5 C 0.022 3.978 6 C 0.051 3.949 7 C 0.520 3.480 8 O -0.572 6.572 9 N -0.619 5.619 10 C 0.101 3.899 11 C -0.115 4.115 12 C 0.073 3.927 13 H 0.067 0.933 14 N -0.525 5.525 15 C 0.029 3.971 16 C 0.055 3.945 17 C 0.443 3.557 18 O -0.610 6.610 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.115 3.885 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.032 0.968 47 H 0.089 0.911 48 H 0.067 0.933 49 H 0.097 0.903 50 H 0.394 0.606 51 H 0.277 0.723 52 H 0.057 0.943 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.881 1.745 8.457 31.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.068 4.068 4 N -0.276 5.276 5 C -0.126 4.126 6 C -0.080 4.080 7 C 0.310 3.690 8 O -0.450 6.450 9 N -0.354 5.354 10 C -0.020 4.020 11 C -0.153 4.153 12 C -0.036 4.036 13 H 0.085 0.915 14 N -0.249 5.249 15 C -0.118 4.118 16 C -0.076 4.076 17 C 0.231 3.769 18 O -0.496 6.496 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.009 4.009 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.108 0.892 48 H 0.085 0.915 49 H 0.115 0.885 50 H 0.228 0.772 51 H 0.086 0.914 52 H 0.076 0.924 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.491 1.190 7.073 30.351 hybrid contribution 1.396 -0.017 1.217 1.852 sum -28.096 1.173 8.289 29.316 Atomic orbital electron populations 1.21698 0.94187 1.02194 1.02319 1.21533 0.96415 0.96049 1.02004 1.22246 0.84774 0.97947 1.01870 1.61579 1.08849 1.20718 1.36432 1.22477 1.01042 1.00195 0.88873 1.21967 0.89817 0.91622 1.04595 1.20934 0.90340 0.82007 0.75734 1.90685 1.72447 1.29475 1.52439 1.48544 1.08326 1.08025 1.70527 1.22334 0.96778 0.79006 1.03919 1.22724 0.90889 0.98283 1.03406 1.22803 0.90427 0.94027 0.96362 0.91528 1.61540 1.01690 1.03898 1.57807 1.22422 1.03132 0.87303 0.98960 1.21735 0.90043 0.99242 0.96556 1.20662 0.84448 0.84182 0.87638 1.90459 1.83662 1.37719 1.37787 1.41962 1.10579 1.37397 1.31394 1.19716 0.91097 1.22386 1.12859 0.90094 1.26067 1.01028 0.95532 0.98817 1.69690 1.28061 1.25873 1.32730 0.84848 0.77273 0.78234 0.77835 1.19610 1.19552 1.19821 1.22039 0.81438 0.96876 1.00555 0.92115 0.92354 0.92143 0.92529 0.92342 0.93526 0.89580 0.94803 0.90790 0.92409 0.89411 0.85623 0.88887 0.88436 0.87285 0.90020 0.92653 0.94933 0.89245 0.91473 0.88528 0.77223 0.91374 0.92416 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.51 5.87 30.60 0.18 -1.33 16 3 C 0.06 0.70 4.96 86.31 0.43 1.13 16 4 N -0.55 -9.95 4.50 -927.03 -4.17 -14.12 16 5 C 0.02 0.42 9.01 127.69 1.15 1.57 16 6 C 0.05 0.75 4.64 85.56 0.40 1.15 16 7 C 0.52 12.43 7.58 87.66 0.66 13.10 16 8 O -0.57 -19.47 14.57 -3.04 -0.04 -19.51 16 9 N -0.62 -12.96 3.33 -811.75 -2.70 -15.66 16 10 C 0.10 1.19 6.49 86.74 0.56 1.76 16 11 C -0.12 -1.71 5.32 31.80 0.17 -1.54 16 12 C 0.07 1.64 2.71 46.30 0.13 1.77 16 13 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 14 N -0.52 -16.24 4.40 -893.49 -3.93 -20.17 16 15 C 0.03 0.85 8.97 127.69 1.15 2.00 16 16 C 0.06 1.98 5.33 85.56 0.46 2.44 16 17 C 0.44 21.43 7.46 87.66 0.65 22.08 16 18 O -0.61 -33.54 13.92 -3.07 -0.04 -33.58 16 19 N -0.58 -30.30 5.29 -306.99 -1.62 -31.92 16 20 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 22 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.98 13.05 21.66 0.28 -50.69 16 24 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 C 0.11 3.01 5.41 86.85 0.47 3.48 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.77 6.47 -2.39 -0.02 0.75 16 34 H 0.05 0.45 8.12 -2.39 -0.02 0.43 16 35 H 0.09 0.83 7.93 -2.39 -0.02 0.81 16 36 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 1.30 6.30 -2.38 -0.02 1.28 16 38 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 39 H 0.09 0.87 8.12 -2.38 -0.02 0.85 16 40 H 0.13 1.29 7.93 -2.38 -0.02 1.27 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.11 1.08 8.11 -2.39 -0.02 1.06 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.05 2.11 5.81 -2.39 -0.01 2.10 16 46 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.09 2.07 7.22 -2.39 -0.02 2.05 16 48 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 49 H 0.10 3.31 6.75 -2.39 -0.02 3.29 16 50 H 0.39 19.96 7.90 -92.71 -0.73 19.23 16 51 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 52 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.06 1.75 7.68 -2.39 -0.02 1.73 16 Total: -1.00 -76.33 416.11 -1.65 -77.98 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.16 Total: 33.56 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 8.40 Total: 28.42 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -12.14 Total: -132.57 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -0.09 Total: -53.09 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -76.33 -1.65 -77.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193623047.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.299 kcal (2) G-P(sol) polarization free energy of solvation -76.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds