Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 N 1.46902 * 109.47513 * 119.99913 * 2 1 3 5 5 C 1.46902 * 110.99783 * 298.95480 * 4 2 1 6 6 C 1.46901 * 111.00326 * 174.99722 * 4 2 1 7 7 C 1.50691 * 109.47131 * 190.00014 * 6 4 2 8 8 O 1.21283 * 120.00448 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99999 * 180.02562 * 7 6 4 10 10 C 1.47019 * 125.64849 * 359.68673 * 9 7 6 11 11 C 1.54314 * 107.27976 * 180.97230 * 10 9 7 12 12 C 1.55160 * 102.86295 * 22.52919 * 11 10 9 13 13 H 1.08999 * 111.00677 * 82.37441 * 12 11 10 14 14 N 1.46897 * 111.03837 * 206.22023 * 12 11 10 15 15 C 1.46904 * 110.99703 * 300.53440 * 14 12 11 16 16 C 1.46903 * 111.00166 * 176.58273 * 14 12 11 17 17 C 1.50698 * 109.47139 * 189.99645 * 16 14 12 18 18 O 1.21298 * 120.00079 * 359.97438 * 17 16 14 19 19 N 1.34781 * 119.99812 * 179.97438 * 17 16 14 20 20 C 1.37095 * 119.99808 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00220 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99862 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00386 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99919 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47205 * 60.00422 * 24 22 20 26 26 H 1.48501 * 109.46877 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47141 * 300.00253 * 24 22 20 28 28 C 1.47433 * 125.65078 * 180.02562 * 9 7 6 29 29 H 1.09005 * 109.46914 * 300.00054 * 1 2 3 30 30 H 1.09000 * 109.47487 * 59.99803 * 1 2 3 31 31 H 1.09008 * 109.47290 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46914 * 239.99946 * 2 1 3 33 33 H 1.08993 * 109.47571 * 60.00405 * 3 2 1 34 34 H 1.09010 * 109.47274 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47112 * 299.99662 * 3 2 1 36 36 H 1.08996 * 109.46892 * 296.04305 * 5 4 2 37 37 H 1.08994 * 109.46882 * 56.04590 * 5 4 2 38 38 H 1.09000 * 109.46581 * 176.04119 * 5 4 2 39 39 H 1.09002 * 109.46879 * 310.00192 * 6 4 2 40 40 H 1.09002 * 109.46685 * 69.99829 * 6 4 2 41 41 H 1.08998 * 109.88825 * 300.51943 * 10 9 7 42 42 H 1.09008 * 109.88133 * 61.68432 * 10 9 7 43 43 H 1.09006 * 110.92272 * 264.11704 * 11 10 9 44 44 H 1.08998 * 110.74551 * 140.85789 * 11 10 9 45 45 H 1.08994 * 109.47614 * 65.78317 * 15 14 12 46 46 H 1.08998 * 109.46876 * 185.79000 * 15 14 12 47 47 H 1.09007 * 109.47016 * 305.78217 * 15 14 12 48 48 H 1.09002 * 109.46575 * 309.99671 * 16 14 12 49 49 H 1.08997 * 109.47243 * 69.99081 * 16 14 12 50 50 H 0.97001 * 119.99936 * 359.97438 * 19 17 16 51 51 H 0.96994 * 120.00452 * 179.97438 * 23 22 20 52 52 H 1.08997 * 110.36402 * 274.66984 * 28 9 7 53 53 H 1.09000 * 110.36314 * 36.99452 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5692 -0.0120 2.4209 6 6 3.4833 -0.8165 1.1751 7 6 3.9279 -1.7364 2.2827 8 8 3.1065 -2.2397 3.0196 9 7 5.2385 -2.0000 2.4544 10 6 6.3348 -1.4655 1.6336 11 6 7.6496 -2.0572 2.1834 12 6 7.1718 -3.3384 2.9166 13 1 7.0408 -4.1635 2.2165 14 7 8.1007 -3.7074 3.9931 15 6 9.4486 -3.9543 3.4637 16 6 7.6064 -4.8726 4.7387 17 6 8.4460 -5.0715 5.9743 18 8 9.3661 -4.3171 6.2102 19 7 8.1746 -6.0877 6.8171 20 6 8.9387 -6.2689 7.9408 21 1 9.7579 -5.5972 8.1509 22 6 8.6586 -7.3162 8.8099 23 7 7.6615 -8.1332 8.5545 24 14 9.6994 -7.5627 10.3414 25 1 9.6137 -6.3529 11.1982 26 1 9.1992 -8.7402 11.0954 27 1 11.1129 -7.7914 9.9478 28 6 5.8096 -2.8778 3.4923 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 2.0053 0.9861 2.4626 37 1 0.4821 0.0664 2.4132 38 1 1.8861 -0.5838 3.2932 39 1 3.7973 -1.2256 0.2148 40 1 3.9335 0.1661 1.3161 41 1 6.1985 -1.7628 0.5939 42 1 6.3592 -0.3783 1.7103 43 1 8.1248 -1.3679 2.8814 44 1 8.3295 -2.3095 1.3696 45 1 9.8595 -3.0255 3.0682 46 1 10.0907 -4.3244 4.2629 47 1 9.3958 -4.6965 2.6670 48 1 6.5687 -4.7055 5.0276 49 1 7.6699 -5.7603 4.1095 50 1 7.4386 -6.6907 6.6285 51 1 7.4662 -8.8645 9.1611 52 1 5.9575 -2.3231 4.4188 53 1 5.1599 -3.7362 3.6626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194284360.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -67.472321 kcal Electronic energy + Delta-G solvation = -30266.775610 eV Core-core repulsion = 26173.180283 eV Total energy + Delta-G solvation = -4093.595327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37652 -40.43194 -39.47057 -38.41938 -36.71589 -35.77661 -33.28781 -32.95923 -31.99199 -30.36067 -29.30515 -28.97399 -27.88262 -26.76047 -26.19815 -24.76300 -23.80628 -21.41746 -20.96494 -20.67658 -20.10094 -19.82512 -18.41298 -17.87685 -17.58660 -16.87151 -16.72658 -16.54808 -16.36937 -16.06929 -15.90971 -15.43700 -15.36389 -15.06144 -14.80516 -14.64147 -14.50193 -14.25040 -14.00806 -13.86597 -13.62474 -13.54591 -13.40117 -13.10213 -12.95108 -12.89882 -12.79783 -12.57257 -12.45309 -12.44704 -12.38507 -12.29247 -12.13361 -12.03990 -11.86413 -11.83147 -11.61449 -11.44717 -10.83194 -10.28476 -10.00419 -9.67853 -9.25985 -9.22014 -8.46118 -5.95172 1.39480 1.41000 1.52262 1.61782 1.78988 2.04747 2.28284 2.74448 3.00769 3.20217 3.30119 3.43234 3.66997 3.78008 3.96470 4.04939 4.15255 4.18095 4.22139 4.28121 4.29572 4.33243 4.39462 4.44419 4.48806 4.51146 4.57545 4.59770 4.64043 4.75518 4.78448 4.79749 4.85955 4.90037 4.99504 5.00800 5.06652 5.09401 5.17610 5.21646 5.29671 5.34399 5.39520 5.40877 5.84755 5.97332 6.04299 6.15743 6.19683 6.53980 6.60026 7.12557 7.18331 7.56001 8.11232 8.71130 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.001974 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.542389 B =14182.010214 C =15237.424674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.075 3.925 3 C -0.184 4.184 4 N -0.540 5.540 5 C 0.019 3.981 6 C 0.050 3.950 7 C 0.520 3.480 8 O -0.572 6.572 9 N -0.619 5.619 10 C 0.102 3.898 11 C -0.115 4.115 12 C 0.073 3.927 13 H 0.067 0.933 14 N -0.525 5.525 15 C 0.030 3.970 16 C 0.055 3.945 17 C 0.443 3.557 18 O -0.610 6.610 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.081 0.919 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.115 3.885 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.035 0.965 48 H 0.096 0.904 49 H 0.068 0.932 50 H 0.394 0.606 51 H 0.277 0.723 52 H 0.058 0.942 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 17.202 -23.881 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.243 4.243 4 N -0.264 5.264 5 C -0.129 4.129 6 C -0.081 4.081 7 C 0.310 3.690 8 O -0.450 6.450 9 N -0.355 5.355 10 C -0.020 4.020 11 C -0.153 4.153 12 C -0.036 4.036 13 H 0.085 0.915 14 N -0.249 5.249 15 C -0.117 4.117 16 C -0.076 4.076 17 C 0.231 3.769 18 O -0.496 6.496 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.009 4.009 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.115 0.885 49 H 0.085 0.915 50 H 0.228 0.772 51 H 0.086 0.914 52 H 0.076 0.924 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.192 17.218 -22.931 30.113 hybrid contribution 0.275 -0.773 0.821 1.161 sum -8.917 16.444 -22.110 28.962 Atomic orbital electron populations 1.21862 0.93913 1.02034 1.02348 1.21851 0.96283 0.92986 0.92119 1.22463 1.01721 0.97198 1.02921 1.61863 1.08854 1.52460 1.03272 1.22483 1.01440 0.96329 0.92627 1.21961 0.89742 0.98426 0.97938 1.20953 0.80117 0.82081 0.85887 1.90685 1.52472 1.53492 1.48384 1.48550 1.06002 1.47861 1.33041 1.22320 0.84283 0.99792 0.95623 1.22714 0.96964 0.95058 1.00562 1.22812 0.90851 0.98446 0.91511 0.91496 1.61538 1.03048 1.35633 1.24717 1.22404 0.89218 1.01490 0.98600 1.21731 0.98698 0.93750 0.93411 1.20659 0.87253 0.82399 0.86637 1.90462 1.34548 1.47558 1.77068 1.41956 1.30765 1.27185 1.21397 1.19636 1.12893 1.13080 1.00533 0.90075 1.26077 0.98179 0.95118 1.02141 1.69678 1.29694 1.17397 1.39546 0.84969 0.78159 0.77905 0.77182 1.19779 1.19625 1.19469 1.22039 0.93604 0.93817 0.91410 0.92857 0.90450 0.92978 0.88834 0.92874 0.91928 0.90608 0.94644 0.90707 0.92726 0.85504 0.89746 0.88263 0.89109 0.90063 0.87288 0.89456 0.92792 0.94675 0.88549 0.91464 0.77216 0.91354 0.92395 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.00 71.98 0.65 -1.01 16 2 C 0.08 0.87 2.96 44.91 0.13 1.01 16 3 C -0.18 -1.57 8.50 71.98 0.61 -0.96 16 4 N -0.54 -9.65 4.49 -901.64 -4.05 -13.69 16 5 C 0.02 0.37 8.40 127.69 1.07 1.45 16 6 C 0.05 0.75 4.08 85.55 0.35 1.10 16 7 C 0.52 12.49 7.57 87.65 0.66 13.16 16 8 O -0.57 -19.52 14.57 -3.04 -0.04 -19.57 16 9 N -0.62 -13.05 3.33 -811.84 -2.70 -15.75 16 10 C 0.10 1.21 6.48 86.73 0.56 1.77 16 11 C -0.12 -1.72 5.34 31.78 0.17 -1.55 16 12 C 0.07 1.65 2.69 46.30 0.12 1.78 16 13 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 14 N -0.52 -16.26 4.40 -893.46 -3.93 -20.19 16 15 C 0.03 0.88 8.90 127.69 1.14 2.02 16 16 C 0.06 1.98 5.34 85.56 0.46 2.44 16 17 C 0.44 21.42 7.42 87.66 0.65 22.07 16 18 O -0.61 -33.49 13.96 -3.08 -0.04 -33.53 16 19 N -0.58 -30.30 5.29 -306.98 -1.62 -31.92 16 20 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 21 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 22 C -0.02 -0.85 5.50 84.92 0.47 -0.39 16 23 N -0.92 -51.03 13.05 21.66 0.28 -50.75 16 24 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 C 0.12 3.04 5.46 86.85 0.47 3.51 16 29 H 0.05 0.66 6.34 -2.38 -0.02 0.64 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.09 0.90 8.03 -2.38 -0.02 0.88 16 33 H 0.05 0.55 6.47 -2.39 -0.02 0.53 16 34 H 0.06 0.46 6.75 -2.38 -0.02 0.44 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.04 0.58 6.51 -2.39 -0.02 0.57 16 37 H 0.07 1.35 6.13 -2.39 -0.01 1.33 16 38 H 0.05 1.45 5.88 -2.39 -0.01 1.44 16 39 H 0.13 1.25 8.00 -2.39 -0.02 1.23 16 40 H 0.08 0.94 6.94 -2.39 -0.02 0.93 16 41 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 2.07 7.37 -2.39 -0.02 2.05 16 46 H 0.05 2.06 5.78 -2.39 -0.01 2.04 16 47 H 0.03 0.86 8.12 -2.38 -0.02 0.84 16 48 H 0.10 3.31 6.79 -2.39 -0.02 3.29 16 49 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 50 H 0.39 19.98 7.90 -92.71 -0.73 19.25 16 51 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 52 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.06 1.75 7.68 -2.39 -0.02 1.73 16 Total: -1.00 -75.99 408.84 -1.57 -77.56 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.17 Total: 34.06 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 8.33 Total: 28.07 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -12.02 Total: -132.31 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -0.09 Total: -53.10 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -75.99 -1.57 -77.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194284360.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.092 kcal (2) G-P(sol) polarization free energy of solvation -75.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds