Wall clock time and date at job start Sat Apr 11 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47246 * 2 1 4 4 H 1.09001 * 109.47252 * 303.67157 * 3 2 1 5 5 C 1.50697 * 109.46927 * 183.66773 * 3 2 1 6 6 O 1.21282 * 120.00324 * 259.13987 * 5 3 2 7 7 N 1.34779 * 119.99894 * 79.15264 * 5 3 2 8 8 C 1.47607 * 118.74789 * 355.86846 * 7 5 3 9 9 C 1.53802 * 111.25602 * 138.35108 * 8 7 5 10 10 C 1.51170 * 109.65621 * 319.84897 * 9 8 7 11 11 N 1.46196 * 109.04515 * 92.49367 * 10 9 8 12 12 C 1.46898 * 111.00290 * 144.77184 * 11 10 9 13 13 C 1.50700 * 109.47357 * 197.08020 * 12 11 10 14 14 O 1.21288 * 119.99830 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99986 * 180.02562 * 13 12 11 16 16 C 1.37093 * 120.00087 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00025 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00074 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99954 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47054 * 60.00450 * 20 18 16 22 22 H 1.48503 * 109.47070 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47514 * 300.00478 * 20 18 16 24 24 C 1.41449 * 116.34462 * 272.98327 * 11 10 9 25 25 C 1.44884 * 118.74459 * 175.85007 * 7 5 3 26 26 N 1.46894 * 109.46915 * 63.66904 * 3 2 1 27 27 C 1.46902 * 111.00197 * 277.59603 * 26 3 2 28 28 C 1.46906 * 111.00061 * 41.54848 * 26 3 2 29 29 H 1.09007 * 109.46761 * 280.62415 * 1 2 3 30 30 H 1.09001 * 109.47378 * 40.62514 * 1 2 3 31 31 H 1.08997 * 109.47369 * 160.63127 * 1 2 3 32 32 H 1.09006 * 109.46936 * 240.00457 * 2 1 3 33 33 H 1.08998 * 109.47483 * 120.00655 * 2 1 3 34 34 H 1.08997 * 109.11535 * 258.79472 * 8 7 5 35 35 H 1.09000 * 109.11563 * 17.91393 * 8 7 5 36 36 H 1.08999 * 109.44340 * 79.97388 * 9 8 7 37 37 H 1.08993 * 109.44371 * 199.87988 * 9 8 7 38 38 H 1.09004 * 109.55258 * 332.62967 * 10 9 8 39 39 H 1.08993 * 109.62636 * 212.40340 * 10 9 8 40 40 H 1.08996 * 109.47003 * 317.08662 * 12 11 10 41 41 H 1.09004 * 109.46549 * 77.07871 * 12 11 10 42 42 H 0.97001 * 119.99888 * 0.02562 * 15 13 12 43 43 H 0.97000 * 119.99280 * 179.97438 * 19 18 16 44 44 H 1.09006 * 109.38305 * 303.31537 * 24 11 10 45 45 H 1.09002 * 109.38318 * 183.63655 * 24 11 10 46 46 H 1.09003 * 109.43646 * 29.79210 * 25 7 5 47 47 H 1.09005 * 109.43113 * 149.65575 * 25 7 5 48 48 H 1.08997 * 109.47412 * 66.40995 * 27 26 3 49 49 H 1.09005 * 109.47479 * 186.41490 * 27 26 3 50 50 H 1.08998 * 109.46707 * 306.40925 * 27 26 3 51 51 H 1.08994 * 109.47366 * 53.80431 * 28 26 3 52 52 H 1.09007 * 109.47074 * 173.80654 * 28 26 3 53 53 H 1.08997 * 109.46639 * 293.80266 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6239 1.9750 -0.8553 5 6 3.5442 1.4434 -0.0909 6 8 4.2119 1.6196 0.9061 7 7 4.1476 1.2486 -1.2802 8 6 3.3122 0.9455 -2.4589 9 6 3.8046 1.7061 -3.7017 10 6 4.2113 3.1088 -3.3115 11 7 5.6407 3.1233 -3.0050 12 6 6.2568 4.3883 -3.4268 13 6 7.7532 4.2215 -3.4909 14 8 8.2568 3.1537 -3.2131 15 7 8.5318 5.2589 -3.8570 16 6 9.8930 5.1071 -3.9158 17 1 10.3414 4.1560 -3.6693 18 6 10.6957 6.1765 -4.2938 19 7 10.1500 7.3336 -4.5943 20 14 12.5503 5.9693 -4.3746 21 1 12.8873 4.9044 -5.3534 22 1 13.1732 7.2485 -4.8002 23 1 13.0651 5.5905 -3.0342 24 6 6.0008 2.8025 -1.6753 25 6 5.5913 1.3451 -1.3532 26 7 1.6240 2.1089 1.2413 27 6 0.2440 2.6017 1.1373 28 6 1.7779 1.2142 2.3962 29 1 -0.3633 0.1895 1.0101 30 1 -0.3634 0.7800 -0.6691 31 1 -0.3634 -0.9695 -0.3408 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.3504 -0.1255 -2.6575 35 1 2.2819 1.2330 -2.2496 36 1 4.6607 1.1851 -4.1304 37 1 3.0032 1.7540 -4.4389 38 1 3.6470 3.4211 -2.4327 39 1 4.0085 3.7916 -4.1364 40 1 5.8796 4.6657 -4.4111 41 1 6.0087 5.1703 -2.7090 42 1 8.1290 6.1130 -4.0788 43 1 10.7104 8.0802 -4.8578 44 1 5.4935 3.4809 -0.9894 45 1 7.0790 2.9100 -1.5566 46 1 6.0234 1.0498 -0.3970 47 1 5.9599 0.6831 -2.1369 48 1 -0.4392 1.7557 1.0623 49 1 0.0000 3.1884 2.0230 50 1 0.1474 3.2266 0.2496 51 1 2.7984 0.8325 2.4267 52 1 1.5685 1.7652 3.3131 53 1 1.0809 0.3811 2.3057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196275251.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:18 Heat of formation + Delta-G solvation = -53.830092 kcal Electronic energy + Delta-G solvation = -31669.513149 eV Core-core repulsion = 27576.509393 eV Total energy + Delta-G solvation = -4093.003755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83267 -40.54381 -39.27692 -38.22423 -36.39090 -35.74125 -33.60629 -33.27682 -33.17022 -30.93438 -29.28699 -28.59500 -27.85534 -26.95840 -25.73102 -23.89983 -23.64338 -21.80112 -21.69360 -21.03951 -19.93928 -19.67254 -18.42761 -17.91997 -17.43077 -17.15844 -16.66332 -16.61256 -16.30888 -16.06985 -15.93018 -15.69741 -15.55191 -15.32009 -15.05276 -14.55753 -14.34321 -14.23729 -13.79750 -13.64223 -13.54110 -13.42429 -13.19077 -13.04663 -12.92387 -12.85052 -12.78312 -12.67492 -12.51704 -12.46568 -12.41521 -12.28857 -12.17739 -12.12948 -11.86423 -11.73221 -11.68646 -11.44510 -10.61071 -10.27370 -9.99441 -9.63478 -9.09966 -9.07524 -8.45588 -5.94007 1.39501 1.40958 1.51933 1.61946 1.97692 2.06953 2.28744 2.76659 3.05087 3.21089 3.38528 3.48788 3.82106 3.83116 3.92834 4.01385 4.12851 4.16199 4.26224 4.29621 4.33490 4.38408 4.40340 4.47350 4.49679 4.50987 4.56275 4.61927 4.65680 4.73251 4.75356 4.82785 4.85734 4.92080 4.98969 5.02782 5.04596 5.10478 5.13491 5.15519 5.35408 5.36709 5.41509 5.64714 5.93004 5.97288 6.12441 6.15097 6.39436 6.56457 6.61932 7.14006 7.24567 7.57908 8.13718 8.71666 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.002298 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.637051 B =12181.624691 C =12417.838732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.074 3.926 4 H 0.122 0.878 5 C 0.507 3.493 6 O -0.574 6.574 7 N -0.604 5.604 8 C 0.102 3.898 9 C -0.127 4.127 10 C 0.070 3.930 11 N -0.548 5.548 12 C 0.065 3.935 13 C 0.440 3.560 14 O -0.612 6.612 15 N -0.576 5.576 16 C -0.331 4.331 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.992 3.008 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.274 1.274 24 C 0.076 3.924 25 C 0.135 3.865 26 N -0.551 5.551 27 C 0.008 3.992 28 C 0.027 3.973 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.035 0.965 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.054 0.946 42 H 0.395 0.605 43 H 0.277 0.723 44 H -0.002 1.002 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.073 0.927 51 H 0.052 0.948 52 H 0.065 0.935 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.668 -12.104 4.086 29.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 C -0.038 4.038 4 H 0.139 0.861 5 C 0.296 3.704 6 O -0.452 6.452 7 N -0.337 5.337 8 C -0.019 4.019 9 C -0.165 4.165 10 C -0.056 4.056 11 N -0.272 5.272 12 C -0.066 4.066 13 C 0.228 3.772 14 O -0.498 6.498 15 N -0.213 5.213 16 C -0.460 4.460 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.816 3.184 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.200 1.200 24 C -0.055 4.055 25 C 0.011 3.989 26 N -0.275 5.275 27 C -0.139 4.139 28 C -0.121 4.121 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.108 0.892 40 H 0.134 0.866 41 H 0.072 0.928 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.016 0.984 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.092 0.908 51 H 0.070 0.930 52 H 0.084 0.916 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -25.432 -12.480 4.549 28.692 hybrid contribution 0.693 0.706 0.450 1.087 sum -24.740 -11.773 5.000 27.851 Atomic orbital electron populations 1.22057 0.92988 1.03384 1.02351 1.22156 0.98352 0.94525 1.03754 1.21814 0.90106 0.96700 0.95152 0.86083 1.21326 0.91522 0.75073 0.82527 1.90644 1.67449 1.50050 1.37081 1.48019 1.06506 1.69835 1.09343 1.22409 0.94625 1.00789 0.84058 1.21880 1.02744 0.94498 0.97409 1.21694 0.84513 0.99064 1.00372 1.57843 1.13640 1.32332 1.23431 1.21736 0.90902 0.91330 1.02641 1.20835 0.89916 0.84288 0.82187 1.90455 1.76300 1.28262 1.54737 1.41948 1.06478 1.12483 1.60428 1.19608 0.82799 0.98696 1.44946 0.90340 1.26031 1.04807 0.94308 0.96241 1.69672 1.38130 1.02327 1.46143 0.85004 0.76851 0.77827 0.78748 1.19544 1.19479 1.19950 1.21481 1.00457 0.96281 0.87257 1.21196 0.80621 0.95579 1.01523 1.61714 1.24726 1.38738 1.02296 1.22886 0.87041 1.00794 1.03155 1.22422 1.01239 0.95471 0.92971 0.92102 0.90844 0.91053 0.89583 0.92009 0.89691 0.87557 0.91498 0.86528 0.94706 0.89221 0.86558 0.92762 0.77122 0.91353 0.98412 0.91597 0.91646 0.89575 0.91724 0.91435 0.90792 0.92951 0.91589 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.11 71.98 0.58 -0.49 16 2 C -0.15 -1.81 4.62 30.59 0.14 -1.66 16 3 C 0.07 1.28 1.46 44.17 0.06 1.34 16 4 H 0.12 1.57 6.01 -2.39 -0.01 1.55 16 5 C 0.51 13.39 6.81 87.66 0.60 13.99 16 6 O -0.57 -20.83 14.15 -3.04 -0.04 -20.88 16 7 N -0.60 -14.41 2.18 -817.91 -1.79 -16.19 16 8 C 0.10 1.46 4.96 86.44 0.43 1.89 16 9 C -0.13 -2.03 5.77 30.27 0.17 -1.85 16 10 C 0.07 1.55 5.32 85.84 0.46 2.01 16 11 N -0.55 -17.80 3.60 -916.41 -3.30 -21.10 16 12 C 0.06 2.30 5.44 85.56 0.47 2.77 16 13 C 0.44 21.37 7.37 87.66 0.65 22.02 16 14 O -0.61 -34.00 13.97 -3.06 -0.04 -34.05 16 15 N -0.58 -30.20 5.29 -306.99 -1.62 -31.82 16 16 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 19 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 20 Si 0.99 43.82 29.55 68.60 2.03 45.85 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 C 0.08 2.77 5.01 87.90 0.44 3.21 16 25 C 0.14 4.22 5.54 87.28 0.48 4.71 16 26 N -0.55 -10.85 4.65 -927.72 -4.31 -15.16 16 27 C 0.01 0.10 8.84 127.69 1.13 1.23 16 28 C 0.03 0.52 8.04 127.69 1.03 1.55 16 29 H 0.06 0.47 4.99 -2.38 -0.01 0.46 16 30 H 0.07 0.37 7.37 -2.39 -0.02 0.35 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.86 6.79 -2.38 -0.02 0.84 16 33 H 0.06 0.97 6.23 -2.39 -0.01 0.95 16 34 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16 35 H 0.11 0.93 5.17 -2.39 -0.01 0.92 16 36 H 0.07 1.40 7.98 -2.39 -0.02 1.38 16 37 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.03 0.80 7.32 -2.38 -0.02 0.78 16 39 H 0.09 1.68 7.36 -2.39 -0.02 1.66 16 40 H 0.12 3.48 7.57 -2.39 -0.02 3.46 16 41 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 42 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 43 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.00 -0.08 8.12 -2.38 -0.02 -0.10 16 45 H 0.07 3.00 5.62 -2.39 -0.01 2.99 16 46 H 0.07 2.28 7.23 -2.39 -0.02 2.27 16 47 H 0.09 2.64 8.11 -2.38 -0.02 2.62 16 48 H 0.06 0.56 4.19 -2.39 -0.01 0.55 16 49 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.07 0.80 7.90 -2.39 -0.02 0.78 16 51 H 0.05 1.35 6.34 -2.39 -0.02 1.34 16 52 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 53 H 0.05 0.71 5.25 -2.39 -0.01 0.70 16 Total: -1.00 -76.81 391.87 -0.68 -77.49 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.20 Total: 34.12 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 7.92 Total: 32.08 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -10.74 Total: -134.61 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -0.09 Total: -54.92 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -76.81 -0.68 -77.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196275251.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.660 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds