Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 H 1.09005 * 109.47098 * 57.34933 * 3 2 1 5 5 C 1.50704 * 109.46915 * 177.34918 * 3 2 1 6 6 O 1.21279 * 120.00173 * 92.27920 * 5 3 2 7 7 N 1.34781 * 119.99787 * 272.27462 * 5 3 2 8 8 C 1.44678 * 118.54554 * 0.02562 * 7 5 3 9 9 C 1.54941 * 109.52222 * 269.05108 * 8 7 5 10 10 C 1.47540 * 109.73636 * 290.52623 * 9 8 7 11 11 N 1.46259 * 114.37664 * 62.22100 * 10 9 8 12 12 C 1.46897 * 111.00432 * 148.55402 * 11 10 9 13 13 C 1.50707 * 109.47235 * 64.92283 * 12 11 10 14 14 O 1.21295 * 119.99537 * 354.64683 * 13 12 11 15 15 N 1.34772 * 120.00005 * 174.37375 * 13 12 11 16 16 C 1.37097 * 119.99597 * 180.27428 * 15 13 12 17 17 H 1.07997 * 120.00446 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99677 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99468 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47334 * 89.99743 * 20 18 16 22 22 H 1.48497 * 109.46691 * 209.99651 * 20 18 16 23 23 H 1.48495 * 109.46999 * 329.99613 * 20 18 16 24 24 C 1.44769 * 110.63906 * 272.25261 * 11 10 9 25 25 C 1.47780 * 118.54748 * 179.97438 * 7 5 3 26 26 N 1.46894 * 109.47073 * 297.34603 * 3 2 1 27 27 C 1.46908 * 110.99906 * 184.33938 * 26 3 2 28 28 C 1.46899 * 111.00455 * 308.29065 * 26 3 2 29 29 H 1.09006 * 109.46729 * 65.06008 * 1 2 3 30 30 H 1.08998 * 109.46815 * 185.05619 * 1 2 3 31 31 H 1.09004 * 109.47591 * 305.06422 * 1 2 3 32 32 H 1.08993 * 109.47411 * 240.00386 * 2 1 3 33 33 H 1.08999 * 109.46980 * 119.99554 * 2 1 3 34 34 H 1.09010 * 109.45963 * 149.04015 * 8 7 5 35 35 H 1.09000 * 109.45741 * 29.06527 * 8 7 5 36 36 H 1.09006 * 109.42978 * 170.44573 * 9 8 7 37 37 H 1.08994 * 109.43152 * 50.60742 * 9 8 7 38 38 H 1.09010 * 108.50199 * 300.94895 * 10 9 8 39 39 H 1.09001 * 108.38261 * 183.39764 * 10 9 8 40 40 H 1.08998 * 109.47196 * 304.92714 * 12 11 10 41 41 H 1.08997 * 109.47662 * 184.92496 * 12 11 10 42 42 H 0.96993 * 120.00043 * 0.27115 * 15 13 12 43 43 H 0.97010 * 119.99186 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.43194 * 214.22821 * 24 11 10 45 45 H 1.09004 * 109.43463 * 334.09008 * 24 11 10 46 46 H 1.08999 * 109.06588 * 258.66862 * 25 7 5 47 47 H 1.09001 * 109.06017 * 17.60395 * 25 7 5 48 48 H 1.08994 * 109.46797 * 66.03060 * 27 26 3 49 49 H 1.08999 * 109.46714 * 186.03066 * 27 26 3 50 50 H 1.08999 * 109.47153 * 306.03108 * 27 26 3 51 51 H 1.09004 * 109.46898 * 56.59039 * 28 26 3 52 52 H 1.08997 * 109.47266 * 176.58779 * 28 26 3 53 53 H 1.08999 * 109.47347 * 296.59230 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6383 1.9699 0.8653 5 6 3.5456 1.4431 0.0657 6 8 4.1972 1.4689 -0.9568 7 7 4.1679 1.4150 1.2609 8 6 3.3598 1.3842 2.4606 9 6 3.0881 2.8326 2.9391 10 6 4.3377 3.4333 3.4436 11 7 5.3960 3.5559 2.4415 12 6 6.2396 4.7287 2.7074 13 6 6.9691 4.5373 4.0122 14 8 6.7302 3.5703 4.7044 15 7 7.8907 5.4378 4.4074 16 6 8.5583 5.2608 5.5916 17 1 8.3460 4.3995 6.2077 18 6 9.5089 6.1889 5.9988 19 7 10.1484 6.0194 7.1342 20 14 9.8766 7.6782 4.9328 21 1 8.9802 8.7972 5.3194 22 1 11.2909 8.0877 5.1256 23 1 9.6511 7.3335 3.5061 24 6 6.1904 2.3468 2.3879 25 6 5.6455 1.4158 1.2880 26 7 1.6033 2.1163 -1.2302 27 6 2.1609 3.4728 -1.3138 28 6 1.9585 1.3271 -2.4172 29 1 -0.3633 0.4334 -0.9319 30 1 -0.3633 -1.0237 0.0906 31 1 -0.3634 0.5904 0.8412 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8890 0.8371 3.2410 35 1 2.4128 0.8882 2.2478 36 1 2.3453 2.8176 3.7368 37 1 2.7116 3.4253 2.1055 38 1 4.7087 2.8210 4.2656 39 1 4.1100 4.4270 3.8295 40 1 5.6146 5.6196 2.7679 41 1 6.9630 4.8464 1.9007 42 1 8.0817 6.2111 3.8538 43 1 10.8118 6.6676 7.4186 44 1 7.2263 2.6031 2.1659 45 1 6.1417 1.8378 3.3505 46 1 5.9988 0.4013 1.4725 47 1 6.0190 1.7511 0.3204 48 1 3.2441 3.4144 -1.4203 49 1 1.7381 3.9868 -2.1770 50 1 1.9142 4.0237 -0.4062 51 1 1.5251 0.3304 -2.3338 52 1 1.5708 1.8184 -3.3095 53 1 3.0432 1.2467 -2.4889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197172184.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -35.558780 kcal Electronic energy + Delta-G solvation = -32169.270377 eV Core-core repulsion = 28077.058925 eV Total energy + Delta-G solvation = -4092.211452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93927 -39.45457 -37.74973 -36.65822 -35.20475 -33.90593 -33.11328 -32.72656 -31.79779 -29.77331 -27.88245 -27.42534 -26.55369 -25.70950 -23.97086 -23.41936 -22.67259 -20.80179 -20.54570 -19.45813 -18.88886 -18.28337 -17.54199 -16.79848 -16.03554 -15.87159 -15.76887 -15.42431 -15.05533 -15.00605 -14.56695 -14.56164 -14.09441 -13.84455 -13.60861 -13.34758 -13.32945 -13.07524 -13.02834 -12.67766 -12.54610 -12.36765 -12.14979 -12.09557 -11.93097 -11.74897 -11.64505 -11.53104 -11.41956 -11.31588 -11.12144 -11.03048 -10.90998 -10.73899 -10.66419 -10.45105 -10.13848 -10.08743 -9.64650 -9.28375 -8.58196 -8.28064 -8.21107 -7.74024 -6.41123 -3.92576 2.55366 2.96462 3.00623 3.00865 3.09554 3.59907 3.78848 4.01978 4.07911 4.41738 4.57914 4.61248 4.74293 4.82667 4.92420 5.01509 5.11199 5.14262 5.23734 5.24372 5.27131 5.35239 5.40136 5.47006 5.51655 5.54887 5.66088 5.68465 5.70615 5.75843 5.78415 5.82059 5.83235 5.85006 5.88094 5.89768 5.96208 6.04644 6.12074 6.15452 6.31032 6.45517 6.59727 6.75004 6.83827 7.20501 7.36128 7.40662 7.47030 8.03858 8.17659 8.47530 8.84034 9.32097 9.69494 10.71610 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.002551 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.436476 B =10973.962496 C =11348.774450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.063 3.937 4 H 0.105 0.895 5 C 0.489 3.511 6 O -0.547 6.547 7 N -0.585 5.585 8 C 0.105 3.895 9 C -0.132 4.132 10 C 0.052 3.948 11 N -0.505 5.505 12 C 0.042 3.958 13 C 0.414 3.586 14 O -0.579 6.579 15 N -0.583 5.583 16 C -0.308 4.308 17 H 0.119 0.881 18 C 0.043 3.957 19 N -0.878 5.878 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.269 1.269 24 C 0.047 3.953 25 C 0.118 3.882 26 N -0.514 5.514 27 C 0.014 3.986 28 C -0.003 4.003 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.371 0.629 43 H 0.274 0.726 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.060 0.940 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.760 -7.840 -14.939 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.049 4.049 4 H 0.123 0.877 5 C 0.276 3.724 6 O -0.425 6.425 7 N -0.317 5.317 8 C -0.019 4.019 9 C -0.171 4.171 10 C -0.076 4.076 11 N -0.227 5.227 12 C -0.090 4.090 13 C 0.200 3.800 14 O -0.464 6.464 15 N -0.222 5.222 16 C -0.437 4.437 17 H 0.136 0.864 18 C -0.161 4.161 19 N -0.517 5.517 20 Si 0.706 3.294 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.082 4.082 25 C -0.004 4.004 26 N -0.237 5.237 27 C -0.134 4.134 28 C -0.150 4.150 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.204 0.796 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.078 0.922 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.133 -8.289 -15.271 25.114 hybrid contribution 1.884 1.342 0.298 2.332 sum -16.248 -6.947 -14.973 23.162 Atomic orbital electron populations 1.21653 0.94084 1.01127 1.02964 1.21618 0.97549 0.93519 1.02832 1.22082 0.89566 0.97482 0.95798 0.87701 1.21952 0.91411 0.75605 0.83479 1.90570 1.67614 1.50744 1.33594 1.47742 1.06647 1.71470 1.05844 1.21727 0.95273 0.97305 0.87570 1.21479 0.98095 0.96088 1.01448 1.20966 0.91492 1.01527 0.93620 1.61291 1.11552 1.02542 1.47361 1.22272 0.96584 0.94505 0.95654 1.20987 0.84123 0.85451 0.89466 1.90519 1.67737 1.31138 1.56997 1.42366 1.36002 1.22657 1.21146 1.19434 1.17114 1.10811 0.96328 0.86376 1.25082 0.96464 0.98179 0.96383 1.69628 1.25240 1.36353 1.20494 0.86663 0.79176 0.83244 0.80297 1.19544 1.20078 1.19400 1.22328 0.96573 0.91026 0.98310 1.22028 0.78697 0.98548 1.01169 1.62538 1.56814 1.02858 1.01467 1.22491 0.99289 0.89441 1.02227 1.22781 1.02522 0.97819 0.91910 0.91540 0.92995 0.92568 0.90908 0.91244 0.90281 0.90353 0.90325 0.91576 0.91755 0.92234 0.89235 0.89316 0.79588 0.91504 0.90730 0.91532 0.92150 0.89540 0.93626 0.91450 0.91744 0.91593 0.92168 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.65 37.16 0.36 -0.62 16 2 C -0.12 -0.96 4.65 -26.73 -0.12 -1.08 16 3 C 0.06 0.62 1.47 -68.86 -0.10 0.52 16 4 H 0.11 0.96 5.83 -51.93 -0.30 0.66 16 5 C 0.49 6.10 5.83 -10.98 -0.06 6.04 16 6 O -0.55 -8.45 11.67 5.56 0.06 -8.38 16 7 N -0.59 -7.01 2.53 -172.19 -0.44 -7.44 16 8 C 0.11 1.05 5.06 -3.99 -0.02 1.03 16 9 C -0.13 -1.40 5.70 -28.34 -0.16 -1.56 16 10 C 0.05 0.74 4.02 -6.81 -0.03 0.71 16 11 N -0.51 -7.57 4.37 -241.02 -1.05 -8.62 16 12 C 0.04 0.67 5.49 -4.97 -0.03 0.64 16 13 C 0.41 8.75 7.07 -10.98 -0.08 8.67 16 14 O -0.58 -14.00 12.14 5.54 0.07 -13.93 16 15 N -0.58 -13.37 5.09 -10.96 -0.06 -13.42 16 16 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 17 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 18 C 0.04 1.14 5.50 -17.46 -0.10 1.05 16 19 N -0.88 -25.18 13.96 55.50 0.77 -24.40 16 20 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 24 C 0.05 0.71 4.25 -4.41 -0.02 0.69 16 25 C 0.12 1.57 6.46 -2.79 -0.02 1.55 16 26 N -0.51 -5.33 4.52 -244.58 -1.11 -6.44 16 27 C 0.01 0.15 9.08 60.07 0.55 0.69 16 28 C 0.00 -0.03 8.75 60.06 0.53 0.50 16 29 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.65 6.08 -51.93 -0.32 0.34 16 33 H 0.07 0.52 7.11 -51.93 -0.37 0.15 16 34 H 0.08 0.81 8.10 -51.92 -0.42 0.39 16 35 H 0.08 0.60 5.10 -51.93 -0.26 0.34 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.72 7.59 -51.93 -0.39 0.33 16 38 H 0.06 1.09 5.85 -51.92 -0.30 0.78 16 39 H 0.06 0.88 7.53 -51.93 -0.39 0.49 16 40 H 0.09 1.28 7.90 -51.93 -0.41 0.87 16 41 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 42 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.07 1.20 7.46 -51.93 -0.39 0.81 16 45 H 0.07 1.14 6.19 -51.93 -0.32 0.82 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.09 1.27 6.97 -51.93 -0.36 0.91 16 48 H 0.05 0.60 6.24 -51.93 -0.32 0.28 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 51 H 0.07 0.60 5.72 -51.93 -0.30 0.30 16 52 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 53 H 0.07 0.88 5.41 -51.93 -0.28 0.59 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -31.71 389.14 -8.77 -40.47 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -8.71 Total: 11.77 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 0.54 Total: 10.23 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -1.88 Total: -60.33 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.13 Total: -22.32 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.71 -8.77 -40.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197172184.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.915 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds