Wall clock time and date at job start Sat Apr 11 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 H 1.09005 * 109.47098 * 57.34933 * 3 2 1 5 5 C 1.50704 * 109.46915 * 177.34918 * 3 2 1 6 6 O 1.21279 * 120.00173 * 92.27920 * 5 3 2 7 7 N 1.34781 * 119.99787 * 272.27462 * 5 3 2 8 8 C 1.44678 * 118.54554 * 0.02562 * 7 5 3 9 9 C 1.54941 * 109.52222 * 269.05108 * 8 7 5 10 10 C 1.47540 * 109.73636 * 290.52623 * 9 8 7 11 11 N 1.46259 * 114.37664 * 62.22100 * 10 9 8 12 12 C 1.46897 * 111.00432 * 148.55402 * 11 10 9 13 13 C 1.50707 * 109.47235 * 64.92283 * 12 11 10 14 14 O 1.21295 * 119.99537 * 354.64683 * 13 12 11 15 15 N 1.34772 * 120.00005 * 174.37375 * 13 12 11 16 16 C 1.37097 * 119.99597 * 180.27428 * 15 13 12 17 17 H 1.07997 * 120.00446 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99677 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99468 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47334 * 89.99743 * 20 18 16 22 22 H 1.48497 * 109.46691 * 209.99651 * 20 18 16 23 23 H 1.48495 * 109.46999 * 329.99613 * 20 18 16 24 24 C 1.44769 * 110.63906 * 272.25261 * 11 10 9 25 25 C 1.47780 * 118.54748 * 179.97438 * 7 5 3 26 26 N 1.46894 * 109.47073 * 297.34603 * 3 2 1 27 27 C 1.46908 * 110.99906 * 184.33938 * 26 3 2 28 28 C 1.46899 * 111.00455 * 308.29065 * 26 3 2 29 29 H 1.09006 * 109.46729 * 65.06008 * 1 2 3 30 30 H 1.08998 * 109.46815 * 185.05619 * 1 2 3 31 31 H 1.09004 * 109.47591 * 305.06422 * 1 2 3 32 32 H 1.08993 * 109.47411 * 240.00386 * 2 1 3 33 33 H 1.08999 * 109.46980 * 119.99554 * 2 1 3 34 34 H 1.09010 * 109.45963 * 149.04015 * 8 7 5 35 35 H 1.09000 * 109.45741 * 29.06527 * 8 7 5 36 36 H 1.09006 * 109.42978 * 170.44573 * 9 8 7 37 37 H 1.08994 * 109.43152 * 50.60742 * 9 8 7 38 38 H 1.09010 * 108.50199 * 300.94895 * 10 9 8 39 39 H 1.09001 * 108.38261 * 183.39764 * 10 9 8 40 40 H 1.08998 * 109.47196 * 304.92714 * 12 11 10 41 41 H 1.08997 * 109.47662 * 184.92496 * 12 11 10 42 42 H 0.96993 * 120.00043 * 0.27115 * 15 13 12 43 43 H 0.97010 * 119.99186 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.43194 * 214.22821 * 24 11 10 45 45 H 1.09004 * 109.43463 * 334.09008 * 24 11 10 46 46 H 1.08999 * 109.06588 * 258.66862 * 25 7 5 47 47 H 1.09001 * 109.06017 * 17.60395 * 25 7 5 48 48 H 1.08994 * 109.46797 * 66.03060 * 27 26 3 49 49 H 1.08999 * 109.46714 * 186.03066 * 27 26 3 50 50 H 1.08999 * 109.47153 * 306.03108 * 27 26 3 51 51 H 1.09004 * 109.46898 * 56.59039 * 28 26 3 52 52 H 1.08997 * 109.47266 * 176.58779 * 28 26 3 53 53 H 1.08999 * 109.47347 * 296.59230 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6383 1.9699 0.8653 5 6 3.5456 1.4431 0.0657 6 8 4.1972 1.4689 -0.9568 7 7 4.1679 1.4150 1.2609 8 6 3.3598 1.3842 2.4606 9 6 3.0881 2.8326 2.9391 10 6 4.3377 3.4333 3.4436 11 7 5.3960 3.5559 2.4415 12 6 6.2396 4.7287 2.7074 13 6 6.9691 4.5373 4.0122 14 8 6.7302 3.5703 4.7044 15 7 7.8907 5.4378 4.4074 16 6 8.5583 5.2608 5.5916 17 1 8.3460 4.3995 6.2077 18 6 9.5089 6.1889 5.9988 19 7 10.1484 6.0194 7.1342 20 14 9.8766 7.6782 4.9328 21 1 8.9802 8.7972 5.3194 22 1 11.2909 8.0877 5.1256 23 1 9.6511 7.3335 3.5061 24 6 6.1904 2.3468 2.3879 25 6 5.6455 1.4158 1.2880 26 7 1.6033 2.1163 -1.2302 27 6 2.1609 3.4728 -1.3138 28 6 1.9585 1.3271 -2.4172 29 1 -0.3633 0.4334 -0.9319 30 1 -0.3633 -1.0237 0.0906 31 1 -0.3634 0.5904 0.8412 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8890 0.8371 3.2410 35 1 2.4128 0.8882 2.2478 36 1 2.3453 2.8176 3.7368 37 1 2.7116 3.4253 2.1055 38 1 4.7087 2.8210 4.2656 39 1 4.1100 4.4270 3.8295 40 1 5.6146 5.6196 2.7679 41 1 6.9630 4.8464 1.9007 42 1 8.0817 6.2111 3.8538 43 1 10.8118 6.6676 7.4186 44 1 7.2263 2.6031 2.1659 45 1 6.1417 1.8378 3.3505 46 1 5.9988 0.4013 1.4725 47 1 6.0190 1.7511 0.3204 48 1 3.2441 3.4144 -1.4203 49 1 1.7381 3.9868 -2.1770 50 1 1.9142 4.0237 -0.4062 51 1 1.5251 0.3304 -2.3338 52 1 1.5708 1.8184 -3.3095 53 1 3.0432 1.2467 -2.4889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197172184.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:25 Heat of formation + Delta-G solvation = -60.177162 kcal Electronic energy + Delta-G solvation = -32170.337910 eV Core-core repulsion = 28077.058925 eV Total energy + Delta-G solvation = -4093.278985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92269 -40.90747 -39.03985 -37.65614 -36.48032 -35.69273 -33.87013 -33.83323 -33.70401 -30.97519 -28.85137 -28.26245 -27.74675 -26.97109 -25.57652 -24.21674 -23.56553 -22.02741 -21.50349 -21.25064 -20.15309 -19.75891 -18.46388 -17.94667 -17.55971 -17.03583 -16.78651 -16.61411 -16.43607 -16.01342 -15.79518 -15.74860 -15.42319 -15.16523 -14.83747 -14.63774 -14.38697 -14.23868 -14.18721 -13.90069 -13.72414 -13.48912 -13.18057 -13.05606 -12.96562 -12.80840 -12.69277 -12.53960 -12.45884 -12.43208 -12.35564 -12.17647 -12.04116 -11.93727 -11.77707 -11.63284 -11.55820 -11.43087 -11.08135 -10.95715 -10.27815 -9.57734 -9.21691 -9.08793 -8.45934 -6.06081 1.27419 1.31232 1.40640 1.60783 1.88046 2.05529 2.18647 2.85338 2.93846 2.99398 3.11418 3.55621 3.82936 3.92279 3.98223 4.00869 4.08958 4.11543 4.23119 4.23360 4.28301 4.43911 4.53310 4.54810 4.62737 4.64665 4.66171 4.67990 4.71666 4.78282 4.79568 4.83974 4.88192 4.99970 5.03136 5.04946 5.08560 5.17649 5.21531 5.29224 5.37824 5.48558 5.56602 5.61723 5.88589 5.93206 5.97008 6.01921 6.10736 6.47693 6.53411 6.83454 7.22377 7.34687 7.88950 8.71379 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.002551 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.436476 B =10973.962496 C =11348.774450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.067 3.933 4 H 0.119 0.881 5 C 0.486 3.514 6 O -0.579 6.579 7 N -0.586 5.586 8 C 0.103 3.897 9 C -0.125 4.125 10 C 0.055 3.945 11 N -0.498 5.498 12 C 0.049 3.951 13 C 0.419 3.581 14 O -0.612 6.612 15 N -0.589 5.589 16 C -0.326 4.326 17 H 0.056 0.944 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.233 1.233 24 C 0.055 3.945 25 C 0.128 3.872 26 N -0.510 5.510 27 C 0.018 3.982 28 C 0.002 3.998 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.054 0.946 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.388 0.612 43 H 0.279 0.721 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.017 0.983 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.068 0.932 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.170 -6.707 -17.224 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 C -0.045 4.045 4 H 0.137 0.863 5 C 0.274 3.726 6 O -0.460 6.460 7 N -0.317 5.317 8 C -0.020 4.020 9 C -0.164 4.164 10 C -0.073 4.073 11 N -0.220 5.220 12 C -0.082 4.082 13 C 0.206 3.794 14 O -0.498 6.498 15 N -0.230 5.230 16 C -0.455 4.455 17 H 0.075 0.925 18 C -0.213 4.213 19 N -0.573 5.573 20 Si 0.782 3.218 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.157 1.157 24 C -0.074 4.074 25 C 0.004 3.996 26 N -0.232 5.232 27 C -0.130 4.130 28 C -0.146 4.146 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.036 0.964 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.095 0.905 52 H 0.087 0.913 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.584 -7.178 -17.566 27.996 hybrid contribution 2.574 0.843 1.062 2.909 sum -18.010 -6.335 -16.504 25.236 Atomic orbital electron populations 1.21611 0.92773 1.01979 1.02905 1.21635 0.98526 0.92179 1.02929 1.22209 0.87422 0.98786 0.96077 0.86304 1.22505 0.92517 0.74697 0.82864 1.90574 1.68548 1.52118 1.34721 1.47833 1.06039 1.71205 1.06641 1.21884 0.96229 0.97221 0.86632 1.21442 0.96502 0.96054 1.02352 1.21013 0.92566 1.00941 0.92734 1.61483 1.11264 1.02193 1.47021 1.22421 0.97072 0.96046 0.92710 1.22169 0.82753 0.83924 0.90505 1.90525 1.68281 1.32429 1.58543 1.42226 1.36572 1.24003 1.20207 1.18993 1.18928 1.09718 0.97896 0.92540 1.26103 0.95449 1.01879 0.97882 1.69804 1.26284 1.38206 1.23001 0.85400 0.78844 0.77865 0.79668 1.18128 1.20119 1.15686 1.22201 0.96230 0.91278 0.97732 1.21799 0.80012 0.98355 0.99396 1.62596 1.56224 1.02746 1.01676 1.22458 0.97517 0.89925 1.03141 1.22728 1.00835 0.98647 0.92379 0.92283 0.91891 0.91758 0.91854 0.90218 0.90762 0.87277 0.87814 0.90984 0.94959 0.92746 0.86372 0.87029 0.77631 0.91154 0.91960 0.93967 0.91271 0.90826 0.96389 0.90379 0.90964 0.90470 0.91301 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.65 71.98 0.69 -0.74 16 2 C -0.11 -1.56 4.65 30.60 0.14 -1.42 16 3 C 0.07 1.15 1.47 44.17 0.06 1.22 16 4 H 0.12 1.73 5.83 -2.38 -0.01 1.71 16 5 C 0.49 11.42 5.83 87.66 0.51 11.93 16 6 O -0.58 -17.67 11.67 -3.03 -0.04 -17.70 16 7 N -0.59 -13.21 2.53 -817.08 -2.07 -15.28 16 8 C 0.10 1.83 5.06 87.38 0.44 2.27 16 9 C -0.12 -2.33 5.70 29.55 0.17 -2.16 16 10 C 0.06 1.52 4.02 84.72 0.34 1.86 16 11 N -0.50 -14.39 4.37 -916.44 -4.01 -18.39 16 12 C 0.05 1.48 5.49 85.56 0.47 1.95 16 13 C 0.42 17.80 7.07 87.66 0.62 18.42 16 14 O -0.61 -30.82 12.14 -3.08 -0.04 -30.86 16 15 N -0.59 -26.94 5.09 -306.98 -1.56 -28.51 16 16 C -0.33 -18.64 10.16 84.04 0.85 -17.78 16 17 H 0.06 3.85 7.39 -2.91 -0.02 3.82 16 18 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 19 N -0.93 -55.61 13.96 21.67 0.30 -55.31 16 20 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 24 C 0.06 1.69 4.25 87.06 0.37 2.06 16 25 C 0.13 3.35 6.46 86.49 0.56 3.91 16 26 N -0.51 -9.47 4.52 -927.71 -4.20 -13.67 16 27 C 0.02 0.35 9.08 127.69 1.16 1.51 16 28 C 0.00 0.04 8.75 127.69 1.12 1.15 16 29 H 0.06 0.73 7.67 -2.38 -0.02 0.71 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 1.00 6.08 -2.39 -0.01 0.99 16 33 H 0.08 0.93 7.11 -2.39 -0.02 0.92 16 34 H 0.07 1.42 8.10 -2.38 -0.02 1.41 16 35 H 0.11 1.29 5.10 -2.39 -0.01 1.27 16 36 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.07 1.32 7.59 -2.39 -0.02 1.30 16 38 H 0.03 1.11 5.85 -2.38 -0.01 1.09 16 39 H 0.05 1.54 7.53 -2.39 -0.02 1.52 16 40 H 0.12 2.99 7.90 -2.39 -0.02 2.97 16 41 H 0.11 2.94 8.09 -2.39 -0.02 2.92 16 42 H 0.39 14.93 5.76 -92.71 -0.53 14.39 16 43 H 0.28 15.24 8.31 -92.70 -0.77 14.47 16 44 H 0.06 2.03 7.46 -2.38 -0.02 2.01 16 45 H 0.04 1.50 6.19 -2.38 -0.01 1.49 16 46 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 2.16 6.97 -2.39 -0.02 2.14 16 48 H 0.02 0.45 6.24 -2.39 -0.01 0.44 16 49 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 51 H 0.08 1.28 5.72 -2.38 -0.01 1.27 16 52 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.04 1.07 5.41 -2.39 -0.01 1.05 16 Total: -1.00 -74.84 389.14 -1.40 -76.24 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: 0.33 Total: 39.17 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 7.98 Total: 23.88 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -11.53 Total: -131.16 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -0.07 Total: -48.56 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -74.84 -1.40 -76.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197172184.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.060 kcal (2) G-P(sol) polarization free energy of solvation -74.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds