Wall clock time and date at job start Sat Apr 11 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47473 * 2 1 4 4 N 1.46906 * 109.47378 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99771 * 293.95638 * 4 3 2 6 6 C 1.46898 * 110.99890 * 170.00285 * 4 3 2 7 7 C 1.50700 * 109.47068 * 190.00323 * 6 4 3 8 8 O 1.21286 * 119.99792 * 359.97438 * 7 6 4 9 9 N 1.34782 * 120.00317 * 180.02562 * 7 6 4 10 10 C 1.46924 * 120.62798 * 359.71589 * 9 7 6 11 11 C 1.52764 * 109.00661 * 233.58786 * 10 9 7 12 12 C 1.53039 * 109.38088 * 305.58603 * 11 10 9 13 13 N 1.46904 * 109.44715 * 181.25477 * 12 11 10 14 14 C 1.46901 * 110.99612 * 84.94133 * 13 12 11 15 15 C 1.50703 * 109.46778 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00334 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00213 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00492 * 180.02562 * 17 15 14 19 19 H 1.08009 * 119.99630 * 359.97438 * 18 17 15 20 20 C 1.38943 * 120.00152 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00139 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99952 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47013 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47008 * 119.99942 * 22 20 18 25 25 H 1.48496 * 109.46998 * 239.99786 * 22 20 18 26 26 C 1.53039 * 109.53926 * 61.24343 * 12 11 10 27 27 C 1.46922 * 120.63075 * 179.97438 * 9 7 6 28 28 H 1.08996 * 109.47261 * 300.00171 * 1 2 3 29 29 H 1.09000 * 109.46870 * 59.99782 * 1 2 3 30 30 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47108 * 240.00112 * 2 1 3 32 32 H 1.09004 * 109.47368 * 120.00213 * 2 1 3 33 33 H 1.09004 * 109.46862 * 59.99962 * 3 2 1 34 34 H 1.09000 * 109.47250 * 299.99985 * 3 2 1 35 35 H 1.08997 * 109.47293 * 60.00221 * 5 4 3 36 36 H 1.09000 * 109.46769 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47106 * 299.99134 * 5 4 3 38 38 H 1.09004 * 109.47244 * 310.00126 * 6 4 3 39 39 H 1.08994 * 109.47665 * 70.00225 * 6 4 3 40 40 H 1.09007 * 109.58746 * 353.41876 * 10 9 7 41 41 H 1.08993 * 109.58788 * 113.84385 * 10 9 7 42 42 H 1.09000 * 109.56322 * 185.55085 * 11 10 9 43 43 H 1.08993 * 109.36095 * 65.50155 * 11 10 9 44 44 H 1.08996 * 109.46259 * 301.22210 * 12 11 10 45 45 H 1.00898 * 110.99981 * 320.99168 * 13 12 11 46 46 H 1.08997 * 109.47493 * 299.99788 * 14 13 12 47 47 H 1.08996 * 109.47300 * 60.00023 * 14 13 12 48 48 H 0.97005 * 119.99310 * 359.97438 * 17 15 14 49 49 H 0.97009 * 120.00281 * 179.97438 * 21 20 18 50 50 H 1.09000 * 109.50149 * 178.68029 * 26 12 11 51 51 H 1.09001 * 109.52339 * 58.59818 * 26 12 11 52 52 H 1.09000 * 109.58792 * 246.15228 * 27 9 7 53 53 H 1.08996 * 109.58661 * 6.44084 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0349 0.8857 1.2542 6 6 4.0356 2.7929 -0.2374 7 6 5.5220 2.7181 -0.4742 8 8 6.0871 1.6453 -0.4468 9 7 6.2236 3.8433 -0.7154 10 6 5.5523 5.1496 -0.7567 11 6 5.8923 5.8422 -2.0752 12 6 7.4128 5.9112 -2.2352 13 7 7.7417 6.6038 -3.4883 14 6 7.7575 8.0601 -3.2963 15 6 8.0985 8.7349 -4.6000 16 8 8.3082 8.0682 -5.5913 17 7 8.1714 10.0791 -4.6642 18 6 8.4811 10.6931 -5.8502 19 1 8.6670 10.0994 -6.7331 20 6 8.5568 12.0789 -5.9161 21 7 8.3310 12.8011 -4.8418 22 14 8.9794 12.9153 -7.5321 23 1 9.1857 11.8865 -8.5829 24 1 7.8658 13.8132 -7.9309 25 1 10.2222 13.7113 -7.3672 26 6 7.9886 4.4937 -2.2698 27 6 7.6732 3.7864 -0.9475 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6854 -0.1401 1.3711 36 1 5.1245 0.8971 1.2279 37 1 3.6852 1.4867 2.0936 38 1 3.5495 3.2234 -1.1130 39 1 3.8374 3.4188 0.6326 40 1 4.4736 5.0085 -0.6873 41 1 5.8967 5.7639 0.0751 42 1 5.4804 6.8514 -2.0741 43 1 5.4648 5.2752 -2.9020 44 1 7.8420 6.4571 -1.3951 45 1 7.1026 6.3430 -4.2241 46 1 6.7755 8.3930 -2.9605 47 1 8.5051 8.3197 -2.5468 48 1 8.0040 10.6123 -3.8712 49 1 8.3842 13.7687 -4.8878 50 1 9.0688 4.5430 -2.4073 51 1 7.5418 3.9390 -3.0949 52 1 8.1940 4.2876 -0.1316 53 1 7.9941 2.7461 -1.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203437418.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:47 Heat of formation + Delta-G solvation = -91.473712 kcal Electronic energy + Delta-G solvation = -29592.017618 eV Core-core repulsion = 25497.381512 eV Total energy + Delta-G solvation = -4094.636105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38199 -40.20673 -39.19391 -38.06709 -36.30433 -35.73741 -34.14623 -33.28996 -32.66045 -31.88921 -29.40733 -28.20708 -27.87602 -26.23685 -24.76864 -24.34088 -23.53967 -21.83297 -21.61172 -21.08231 -20.05607 -19.78062 -18.41389 -17.68238 -17.02240 -16.97854 -16.74701 -16.49806 -16.33773 -16.07898 -15.82118 -15.48169 -15.36306 -15.27338 -15.11719 -14.91067 -14.54336 -14.22665 -13.95556 -13.75328 -13.64600 -13.50430 -13.41775 -13.11408 -12.95373 -12.86134 -12.78764 -12.66632 -12.56519 -12.39775 -12.35591 -12.20584 -12.11585 -11.94586 -11.80945 -11.53337 -11.49917 -11.45775 -10.72005 -10.33347 -10.00392 -9.69689 -9.28543 -9.23102 -8.46391 -5.94768 1.36890 1.42552 1.56329 1.61979 1.91733 2.06763 2.29702 2.91762 2.95231 3.21271 3.51223 3.52365 3.75720 3.95473 3.98759 4.06301 4.12426 4.18181 4.25553 4.29351 4.34456 4.35925 4.47661 4.47893 4.50296 4.52715 4.55621 4.60945 4.67863 4.68541 4.74624 4.81238 4.83677 4.88760 4.92741 5.02720 5.10174 5.18823 5.23464 5.27805 5.30144 5.41954 5.42701 5.56572 5.92936 5.94427 6.09277 6.15944 6.40656 6.44552 6.61449 7.13923 7.21060 7.57741 8.13597 8.71027 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.001658 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.228974 B =16882.599052 C =17540.465783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.057 3.943 4 N -0.549 5.549 5 C 0.023 3.977 6 C 0.040 3.960 7 C 0.511 3.489 8 O -0.568 6.568 9 N -0.611 5.611 10 C 0.113 3.887 11 C -0.162 4.162 12 C 0.091 3.909 13 N -0.680 5.680 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.113 4.113 27 C 0.118 3.882 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.342 0.658 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.077 0.923 51 H 0.049 0.951 52 H 0.084 0.916 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -17.560 17.782 28.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.070 4.070 4 N -0.273 5.273 5 C -0.124 4.124 6 C -0.090 4.090 7 C 0.300 3.700 8 O -0.447 6.447 9 N -0.345 5.345 10 C -0.009 4.009 11 C -0.202 4.202 12 C -0.019 4.019 13 N -0.311 5.311 14 C -0.064 4.064 15 C 0.223 3.777 16 O -0.513 6.513 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.152 4.152 27 C -0.005 4.005 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.161 0.839 46 H 0.090 0.910 47 H 0.122 0.878 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.068 0.932 52 H 0.103 0.897 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.359 -18.711 16.866 28.513 hybrid contribution -0.705 1.464 -0.022 1.625 sum -14.064 -17.246 16.844 27.910 Atomic orbital electron populations 1.21706 0.94379 1.02213 1.02220 1.21506 0.96266 0.95945 1.02080 1.22251 0.85109 0.97995 1.01651 1.61609 1.08600 1.20638 1.36495 1.22468 1.01062 1.00202 0.88709 1.22058 0.91114 0.91678 1.04189 1.21035 0.90232 0.83081 0.75691 1.90651 1.72235 1.29524 1.52282 1.48267 1.08633 1.07393 1.70218 1.21794 0.98872 0.82612 0.97669 1.22575 0.97012 1.01987 0.98657 1.21643 0.93934 0.94534 0.91742 1.60149 1.58293 1.04646 1.08041 1.21551 1.02146 0.88716 0.94010 1.20999 0.82726 0.82390 0.91546 1.90500 1.56359 1.64805 1.39625 1.41928 1.61893 1.05442 1.11746 1.19689 1.46280 0.90507 0.89926 0.90523 1.25990 0.96706 0.96333 1.02055 1.69667 1.49464 1.07171 1.29671 0.84899 0.78276 0.77867 0.77457 1.19984 1.19529 1.19656 1.21793 1.01799 0.94780 0.96830 1.21540 0.80252 1.01636 0.97032 0.92201 0.92340 0.92238 0.92470 0.92141 0.93662 0.90010 0.90974 0.91943 0.94931 0.86294 0.89611 0.87529 0.89074 0.89433 0.92000 0.89007 0.83876 0.91025 0.87804 0.76889 0.91305 0.90485 0.93172 0.89745 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.12 -1.42 5.86 30.59 0.18 -1.24 16 3 C 0.06 0.67 4.96 86.30 0.43 1.10 16 4 N -0.55 -9.18 4.50 -927.07 -4.17 -13.36 16 5 C 0.02 0.39 8.96 127.69 1.14 1.54 16 6 C 0.04 0.56 3.80 85.56 0.32 0.88 16 7 C 0.51 10.43 7.39 87.66 0.65 11.08 16 8 O -0.57 -16.48 13.74 -3.05 -0.04 -16.52 16 9 N -0.61 -10.31 2.98 -819.65 -2.44 -12.75 16 10 C 0.11 1.24 6.31 86.22 0.54 1.79 16 11 C -0.16 -2.48 5.31 30.53 0.16 -2.32 16 12 C 0.09 1.84 2.43 44.94 0.11 1.95 16 13 N -0.68 -20.05 5.87 -495.44 -2.91 -22.96 16 14 C 0.07 2.15 5.96 85.56 0.51 2.66 16 15 C 0.44 20.24 7.82 87.66 0.69 20.92 16 16 O -0.63 -34.59 15.78 -3.07 -0.05 -34.64 16 17 N -0.57 -28.77 5.29 -306.98 -1.62 -30.40 16 18 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 22 Si 0.99 42.58 29.55 68.60 2.03 44.60 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C -0.11 -2.38 5.69 30.69 0.17 -2.20 16 27 C 0.12 2.21 6.44 86.38 0.56 2.76 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.73 6.55 -2.39 -0.02 0.72 16 33 H 0.05 0.44 8.12 -2.38 -0.02 0.42 16 34 H 0.08 0.85 7.93 -2.39 -0.02 0.83 16 35 H 0.07 1.13 6.47 -2.39 -0.02 1.12 16 36 H 0.06 1.38 5.82 -2.39 -0.01 1.36 16 37 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.12 1.26 7.47 -2.38 -0.02 1.24 16 39 H 0.09 0.79 7.93 -2.39 -0.02 0.77 16 40 H 0.11 0.69 5.94 -2.38 -0.01 0.67 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 1.23 7.42 -2.39 -0.02 1.21 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 1.65 7.80 -2.39 -0.02 1.64 16 45 H 0.34 10.95 8.18 -89.70 -0.73 10.22 16 46 H 0.07 1.88 7.41 -2.39 -0.02 1.87 16 47 H 0.10 2.95 8.05 -2.39 -0.02 2.93 16 48 H 0.40 18.74 7.90 -92.70 -0.73 18.00 16 49 H 0.28 13.73 8.31 -92.70 -0.77 12.96 16 50 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 53 H 0.08 1.72 7.00 -2.39 -0.02 1.70 16 Total: -1.00 -73.49 415.00 -2.02 -75.51 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.56 Total: 38.72 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 7.46 Total: 20.19 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -10.86 Total: -127.87 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.09 Total: -51.16 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -73.49 -2.02 -75.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203437418.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.968 kcal (2) G-P(sol) polarization free energy of solvation -73.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds