Wall clock time and date at job start Sat Apr 11 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46693 * 2 1 4 4 C 1.52999 * 109.47547 * 240.00380 * 2 1 3 5 5 C 1.53001 * 109.47174 * 119.99898 * 2 1 3 6 6 H 1.09007 * 109.46546 * 305.91268 * 5 2 1 7 7 N 1.46500 * 109.46782 * 65.91056 * 5 2 1 8 8 C 1.34781 * 120.00061 * 274.72072 * 7 5 2 9 9 N 1.34769 * 119.99614 * 180.27838 * 8 7 5 10 10 O 1.21588 * 119.99778 * 0.28245 * 8 7 5 11 11 C 1.50695 * 109.47171 * 185.91607 * 5 2 1 12 12 O 1.21284 * 119.99702 * 273.25240 * 11 5 2 13 13 N 1.34772 * 120.00549 * 93.25360 * 11 5 2 14 14 C 1.46923 * 120.62768 * 354.71313 * 13 11 5 15 15 C 1.53622 * 108.54491 * 126.36854 * 14 13 11 16 16 C 1.53038 * 109.24234 * 54.85521 * 15 14 13 17 17 C 1.53004 * 109.45087 * 178.49924 * 16 15 14 18 18 N 1.46502 * 109.46756 * 295.05846 * 17 16 15 19 19 C 1.36942 * 119.99637 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99784 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99687 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00318 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47175 * 90.00057 * 23 21 19 25 25 H 1.48501 * 109.47535 * 209.99930 * 23 21 19 26 26 H 1.48498 * 109.47160 * 330.00411 * 23 21 19 27 27 C 1.53043 * 109.54028 * 298.51232 * 16 15 14 28 28 C 1.46924 * 120.63518 * 174.99218 * 13 11 5 29 29 H 1.08994 * 109.48027 * 299.99846 * 1 2 3 30 30 H 1.09009 * 109.47131 * 60.00482 * 1 2 3 31 31 H 1.09001 * 109.46834 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47006 * 181.68482 * 3 2 1 33 33 H 1.08998 * 109.47337 * 301.68366 * 3 2 1 34 34 H 1.09002 * 109.46928 * 61.68851 * 3 2 1 35 35 H 1.09002 * 109.46693 * 299.99764 * 4 2 1 36 36 H 1.08997 * 109.47060 * 59.99869 * 4 2 1 37 37 H 1.08996 * 109.46895 * 179.97438 * 4 2 1 38 38 H 0.97000 * 119.99494 * 95.00367 * 7 5 2 39 39 H 0.97000 * 120.00564 * 0.02562 * 9 8 7 40 40 H 0.96999 * 119.99637 * 180.02562 * 9 8 7 41 41 H 1.09003 * 109.58469 * 246.20211 * 14 13 11 42 42 H 1.09000 * 109.58930 * 6.62200 * 14 13 11 43 43 H 1.08995 * 109.63605 * 294.86264 * 15 14 13 44 44 H 1.09000 * 109.43533 * 174.71898 * 15 14 13 45 45 H 1.09009 * 109.46165 * 58.53128 * 16 15 14 46 46 H 1.08995 * 109.46985 * 55.06196 * 17 16 15 47 47 H 1.08997 * 109.47043 * 175.06164 * 17 16 15 48 48 H 0.96995 * 120.00181 * 0.02562 * 18 17 16 49 49 H 0.96999 * 120.00283 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.49640 * 301.41469 * 27 16 15 51 51 H 1.08995 * 109.52610 * 181.33442 * 27 16 15 52 52 H 1.09005 * 109.58342 * 353.37401 * 28 13 11 53 53 H 1.08998 * 109.59144 * 113.65595 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.5927 -0.2720 2.1361 7 7 1.6712 -2.1374 1.1802 8 6 0.4579 -2.5394 1.6076 9 7 0.1208 -3.8430 1.5493 10 8 -0.3326 -1.7260 2.0457 11 6 3.5398 -0.5957 1.3247 12 8 4.2451 -1.3989 0.7517 13 7 4.0975 0.4091 2.0287 14 6 3.2603 1.4552 2.6316 15 6 3.5986 1.5503 4.1271 16 6 5.1031 1.7779 4.2905 17 6 5.4399 1.9106 5.7771 18 7 4.8034 3.1150 6.3162 19 6 4.9645 3.4420 7.6362 20 1 5.5612 2.8123 8.2796 21 6 4.3610 4.5828 8.1473 22 7 3.6335 5.3499 7.3633 23 14 4.5814 5.0293 9.9477 24 1 5.7782 5.8954 10.1000 25 1 3.3794 5.7572 10.4280 26 1 4.7620 3.7905 10.7464 27 6 5.8676 0.5916 3.6985 28 6 5.5545 0.4827 2.2029 29 1 -0.3635 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1295 1.4428 -0.0302 33 1 1.6521 1.9651 -0.8745 34 1 1.7014 1.9476 0.9048 35 1 1.6768 -1.7488 -1.2492 36 1 1.6768 -0.2073 -2.1392 37 1 3.1300 -0.7207 -1.2494 38 1 2.3019 -2.7862 0.8307 39 1 0.7515 -4.4919 1.2001 40 1 -0.7526 -4.1323 1.8565 41 1 3.4633 2.4102 2.1469 42 1 2.2084 1.1973 2.5091 43 1 3.3145 0.6240 4.6265 44 1 3.0544 2.3845 4.5698 45 1 5.3908 2.6914 3.7699 46 1 5.0729 1.0350 6.3123 47 1 6.5204 1.9849 5.8996 48 1 4.2673 3.6803 5.7385 49 1 3.2115 6.1469 7.7205 50 1 5.5621 -0.3257 4.2019 51 1 6.9382 0.7428 3.8361 52 1 6.0168 -0.4174 1.7974 53 1 5.9411 1.3585 1.6818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206874008.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:00 Heat of formation + Delta-G solvation = -87.087319 kcal Electronic energy + Delta-G solvation = -32005.930934 eV Core-core repulsion = 27911.485037 eV Total energy + Delta-G solvation = -4094.445897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.24443 -40.65030 -39.08987 -37.82197 -36.60067 -35.05654 -34.49139 -33.89507 -32.54588 -31.92266 -29.05380 -28.19832 -28.08803 -27.56896 -25.42914 -24.33577 -23.33770 -22.31093 -21.72445 -20.60991 -19.82938 -19.44876 -19.07604 -18.30131 -17.82812 -17.21958 -16.87986 -16.68527 -16.12482 -15.97334 -15.63761 -15.41160 -15.34324 -15.26815 -15.03994 -14.76369 -14.59156 -14.28645 -14.07634 -13.92377 -13.70158 -13.55036 -13.26682 -12.97672 -12.94853 -12.84729 -12.72375 -12.53528 -12.30388 -12.21228 -12.13954 -11.95290 -11.91338 -11.76165 -11.65413 -11.45246 -11.38643 -11.31524 -10.92617 -10.72860 -10.60636 -10.02307 -9.68558 -8.96967 -7.94082 -5.21812 1.31053 1.47706 1.48803 1.57228 1.69263 2.11891 2.21988 2.56728 3.25520 3.39374 3.56288 3.68227 3.70122 3.77150 3.86674 3.89919 4.04576 4.09622 4.26631 4.32258 4.34563 4.41612 4.49047 4.59402 4.71282 4.74005 4.76861 4.81942 4.86200 4.89346 4.95415 5.00760 5.01457 5.02243 5.08789 5.12609 5.16834 5.23957 5.26596 5.33508 5.41516 5.47639 5.48397 5.53974 5.55241 5.83313 6.04715 6.27806 6.29066 6.96501 7.03800 7.35679 7.64498 8.12212 8.36211 9.29209 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002662 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.997937 B =10516.949031 C =10996.829760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.068 4.068 3 C -0.155 4.155 4 C -0.133 4.133 5 C 0.154 3.846 6 H 0.098 0.902 7 N -0.721 5.721 8 C 0.703 3.297 9 N -0.848 5.848 10 O -0.625 6.625 11 C 0.523 3.477 12 O -0.560 6.560 13 N -0.598 5.598 14 C 0.106 3.894 15 C -0.121 4.121 16 C -0.083 4.083 17 C 0.157 3.843 18 N -0.742 5.742 19 C -0.246 4.246 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.970 3.030 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.272 1.272 27 C -0.115 4.115 28 C 0.116 3.884 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.410 0.590 39 H 0.412 0.588 40 H 0.422 0.578 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.011 0.989 47 H 0.020 0.980 48 H 0.376 0.624 49 H 0.251 0.749 50 H 0.059 0.941 51 H 0.090 0.910 52 H 0.091 0.909 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 -17.330 -20.379 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.070 4.070 3 C -0.212 4.212 4 C -0.191 4.191 5 C 0.044 3.956 6 H 0.116 0.884 7 N -0.379 5.379 8 C 0.401 3.599 9 N -0.418 5.418 10 O -0.506 6.506 11 C 0.310 3.690 12 O -0.439 6.439 13 N -0.330 5.330 14 C -0.016 4.016 15 C -0.159 4.159 16 C -0.102 4.102 17 C 0.030 3.970 18 N -0.385 5.385 19 C -0.378 4.378 20 H 0.089 0.911 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.799 3.201 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.197 1.197 27 C -0.154 4.154 28 C -0.006 4.006 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.248 0.752 39 H 0.242 0.758 40 H 0.255 0.745 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.029 0.971 47 H 0.038 0.962 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.108 0.892 52 H 0.109 0.891 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.230 -17.017 -20.159 26.578 hybrid contribution 0.016 0.005 1.071 1.071 sum -3.214 -17.012 -19.088 25.770 Atomic orbital electron populations 1.21778 0.92894 1.01859 1.01391 1.20869 0.96743 0.95717 0.93644 1.22207 1.01006 0.94365 1.03643 1.21788 1.00778 1.00262 0.96244 1.20804 0.90861 0.82920 1.01024 0.88422 1.44666 1.16192 1.08394 1.68611 1.16022 0.81872 0.83772 0.78234 1.42778 1.22333 1.05868 1.70776 1.90984 1.51892 1.53528 1.54151 1.20514 0.90226 0.80357 0.77856 1.90647 1.64097 1.43035 1.46149 1.48134 1.08134 1.25397 1.51341 1.22250 0.95335 0.91445 0.92541 1.21910 0.96429 1.01802 0.95809 1.21196 0.95221 0.98998 0.94795 1.20819 0.95042 0.88264 0.92849 1.42552 1.60706 1.27102 1.08160 1.19603 1.24769 1.05558 0.87879 0.91095 1.25502 1.00820 0.98211 1.01989 1.69790 1.38713 1.16978 1.36195 0.85194 0.76641 0.77877 0.80370 1.21360 1.22141 1.19736 1.21823 1.01169 0.97513 0.94894 1.21675 0.79151 1.03749 0.95993 0.93412 0.91919 0.93200 0.92574 0.90606 0.91408 0.92458 0.91503 0.93052 0.75246 0.75756 0.74454 0.89024 0.88604 0.92777 0.91750 0.90826 0.97108 0.96220 0.79096 0.93980 0.92216 0.89156 0.89083 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 7.10 71.98 0.51 -1.93 16 2 C -0.07 -1.25 0.62 -52.18 -0.03 -1.28 16 3 C -0.15 -2.62 6.82 71.98 0.49 -2.13 16 4 C -0.13 -2.27 7.99 71.98 0.58 -1.69 16 5 C 0.15 3.24 1.49 44.24 0.07 3.30 16 6 H 0.10 2.39 5.45 -2.38 -0.01 2.38 16 7 N -0.72 -13.46 4.00 -461.41 -1.85 -15.31 16 8 C 0.70 14.28 7.46 179.06 1.34 15.62 16 9 N -0.85 -9.57 8.88 -184.75 -1.64 -11.21 16 10 O -0.62 -17.85 14.33 -3.99 -0.06 -17.91 16 11 C 0.52 11.88 5.19 87.66 0.45 12.33 16 12 O -0.56 -14.54 14.49 -3.04 -0.04 -14.58 16 13 N -0.60 -13.01 2.54 -818.08 -2.08 -15.09 16 14 C 0.11 2.36 4.17 86.51 0.36 2.72 16 15 C -0.12 -3.50 5.26 30.82 0.16 -3.34 16 16 C -0.08 -2.44 2.19 -10.77 -0.02 -2.47 16 17 C 0.16 6.11 5.65 86.38 0.49 6.60 16 18 N -0.74 -37.13 5.32 -343.45 -1.83 -38.95 16 19 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 20 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 22 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 23 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C -0.12 -2.66 5.36 30.67 0.16 -2.50 16 28 C 0.12 2.40 6.42 86.36 0.55 2.95 16 29 H 0.05 1.11 7.90 -2.39 -0.02 1.09 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.05 1.10 5.64 -2.39 -0.01 1.09 16 32 H 0.06 1.00 6.52 -2.39 -0.02 0.98 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.15 5.88 -2.39 -0.01 1.13 16 35 H 0.06 0.94 7.45 -2.39 -0.02 0.92 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.01 6.68 -2.39 -0.02 0.99 16 38 H 0.41 6.58 7.92 -92.71 -0.73 5.85 16 39 H 0.41 2.18 8.84 -92.71 -0.82 1.36 16 40 H 0.42 3.94 8.93 -92.71 -0.83 3.11 16 41 H 0.09 1.82 7.87 -2.39 -0.02 1.80 16 42 H 0.10 2.03 4.06 -2.39 -0.01 2.02 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.06 2.21 7.15 -2.39 -0.02 2.19 16 45 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.38 19.69 6.84 -92.71 -0.63 19.06 16 49 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 50 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.09 1.93 7.04 -2.38 -0.02 1.91 16 53 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -71.84 396.41 -0.82 -72.67 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -2.05 Total: 38.86 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.41 Total: 11.54 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -7.11 Total: -138.83 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.10 Total: -32.49 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.84 -0.82 -72.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206874008.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.422 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds