Wall clock time and date at job start Sat Apr 11 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 H 1.08999 * 109.47330 * 52.80347 * 3 2 1 5 5 C 1.50697 * 109.47099 * 292.79710 * 3 2 1 6 6 O 1.21285 * 120.00380 * 262.38938 * 5 3 2 7 7 N 1.34782 * 119.99780 * 82.39055 * 5 3 2 8 8 C 1.46923 * 120.63125 * 4.98512 * 7 5 3 9 9 C 1.53614 * 108.54697 * 126.36878 * 8 7 5 10 10 C 1.53043 * 109.24168 * 54.85333 * 9 8 7 11 11 C 1.53037 * 109.53821 * 298.51327 * 10 9 8 12 12 H 1.08997 * 109.49988 * 301.40871 * 11 10 9 13 13 N 1.46902 * 109.52402 * 181.33212 * 11 10 9 14 14 C 1.46896 * 111.00369 * 85.14454 * 13 11 10 15 15 C 1.50702 * 109.47446 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99559 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99897 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99770 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00167 * 0.02562 * 18 17 15 20 20 C 1.38960 * 120.00197 * 180.02562 * 18 17 15 21 21 N 1.31402 * 119.99950 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99614 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47257 * 89.99522 * 22 20 18 24 24 H 1.48497 * 109.46995 * 210.00012 * 22 20 18 25 25 H 1.48509 * 109.47169 * 329.99642 * 22 20 18 26 26 C 1.46924 * 120.62953 * 185.26218 * 7 5 3 27 27 N 1.46899 * 109.47056 * 172.80055 * 3 2 1 28 28 C 1.46896 * 111.00355 * 285.36638 * 27 3 2 29 29 C 1.46907 * 111.00215 * 49.31933 * 27 3 2 30 30 H 1.08997 * 109.46754 * 55.05542 * 1 2 3 31 31 H 1.08993 * 109.46824 * 175.05549 * 1 2 3 32 32 H 1.09005 * 109.47089 * 295.05911 * 1 2 3 33 33 H 1.09002 * 109.47270 * 119.99671 * 2 1 3 34 34 H 1.08993 * 109.47289 * 239.99892 * 2 1 3 35 35 H 1.09007 * 109.58578 * 246.20547 * 8 7 5 36 36 H 1.09000 * 109.58427 * 6.62529 * 8 7 5 37 37 H 1.09004 * 109.63711 * 294.86491 * 9 8 7 38 38 H 1.09000 * 109.46326 * 174.74210 * 9 8 7 39 39 H 1.08998 * 109.45987 * 178.49227 * 10 9 8 40 40 H 1.09000 * 109.45789 * 58.53377 * 10 9 8 41 41 H 1.00908 * 110.99643 * 321.18980 * 13 11 10 42 42 H 1.09000 * 109.47173 * 300.00434 * 14 13 11 43 43 H 1.08998 * 109.46866 * 60.00251 * 14 13 11 44 44 H 0.96999 * 120.00247 * 0.02562 * 17 15 14 45 45 H 0.97009 * 119.99744 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.59131 * 353.37417 * 26 7 5 47 47 H 1.09000 * 109.58549 * 113.79760 * 26 7 5 48 48 H 1.09006 * 109.47186 * 65.19660 * 28 27 3 49 49 H 1.08996 * 109.47767 * 185.19765 * 28 27 3 50 50 H 1.09005 * 109.47162 * 305.19945 * 28 27 3 51 51 H 1.09001 * 109.46963 * 59.99423 * 29 27 3 52 52 H 1.08994 * 109.47402 * 180.02562 * 29 27 3 53 53 H 1.08998 * 109.46874 * 300.00396 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5754 1.9922 0.8186 5 6 1.6884 2.0996 -1.3098 6 8 2.5124 2.1618 -2.1976 7 7 0.4582 2.6182 -1.4947 8 6 -0.5146 2.6485 -0.3941 9 6 -1.0190 4.0898 -0.2272 10 6 -1.5685 4.5900 -1.5652 11 6 -0.4504 4.5892 -2.6101 12 1 0.3663 5.2256 -2.2696 13 7 -0.9702 5.0993 -3.8858 14 6 -0.9167 6.5667 -3.9271 15 6 -1.4574 7.0523 -5.2473 16 8 -1.8494 6.2543 -6.0724 17 7 -1.5065 8.3731 -5.5107 18 6 -1.9979 8.8148 -6.7119 19 1 -2.3462 8.1043 -7.4470 20 6 -2.0480 10.1766 -6.9837 21 7 -2.5196 10.5999 -8.1348 22 14 -1.4450 11.4054 -5.7126 23 1 0.0008 11.6686 -5.9254 24 1 -2.2047 12.6738 -5.8510 25 1 -1.6520 10.8507 -4.3506 26 6 0.0624 3.1585 -2.8024 27 7 3.4987 1.4462 0.1736 28 6 3.8644 1.1396 1.5629 29 6 4.1422 0.5108 -0.7587 30 1 -0.3633 0.5886 -0.8424 31 1 -0.3633 -1.0238 -0.0886 32 1 -0.3633 0.4353 0.9310 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 -1.3515 1.9903 -0.6279 36 1 -0.0343 2.3189 0.5272 37 1 -0.1969 4.7310 0.0910 38 1 -1.8098 4.1134 0.5225 39 1 -1.9519 5.6031 -1.4444 40 1 -2.3741 3.9339 -1.8949 41 1 -1.9082 4.7669 -4.0529 42 1 -1.5191 6.9753 -3.1158 43 1 0.1162 6.8959 -3.8140 44 1 -1.1934 9.0112 -4.8506 45 1 -2.5542 11.5506 -8.3247 46 1 0.9234 3.1656 -3.4707 47 1 -0.7284 2.5411 -3.2286 48 1 3.5645 0.1190 1.8008 49 1 4.9429 1.2392 1.6852 50 1 3.3570 1.8331 2.2336 51 1 3.9113 0.8026 -1.7833 52 1 5.2215 0.5331 -0.6086 53 1 3.7710 -0.4975 -0.5758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208411597.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:18 Heat of formation + Delta-G solvation = -69.127211 kcal Electronic energy + Delta-G solvation = -30885.254326 eV Core-core repulsion = 26791.587238 eV Total energy + Delta-G solvation = -4093.667088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79979 -40.39743 -39.30582 -37.93961 -36.56357 -35.89462 -34.05223 -33.74541 -32.99835 -31.19185 -28.93001 -28.47638 -27.99770 -26.17813 -25.60694 -24.24612 -23.34720 -22.77272 -21.57082 -21.25012 -20.30302 -19.47204 -18.52472 -17.86063 -17.23761 -17.14013 -16.63272 -16.45166 -16.33399 -15.91959 -15.57048 -15.42598 -15.32543 -15.22095 -15.07433 -14.67713 -14.62483 -14.20449 -14.20147 -14.03995 -13.94157 -13.65134 -13.39627 -13.28617 -13.20347 -12.94183 -12.83554 -12.60680 -12.46739 -12.42298 -12.40785 -12.15938 -12.06217 -11.97843 -11.71132 -11.63823 -11.55659 -11.52475 -10.56933 -10.47663 -10.26238 -9.72233 -9.26285 -9.21182 -8.42218 -6.03228 1.29105 1.35345 1.43760 1.60546 1.84952 1.93377 2.22265 2.72948 3.04525 3.13762 3.40679 3.47461 3.75854 3.77236 3.83146 3.94402 4.05706 4.13292 4.15527 4.24784 4.30075 4.33928 4.38446 4.43916 4.48704 4.51572 4.57349 4.60065 4.63660 4.71442 4.81560 4.86651 4.88559 4.90443 5.00683 5.07320 5.09032 5.14037 5.16380 5.18251 5.33725 5.36245 5.48372 5.53577 5.89325 5.93339 6.02432 6.08554 6.37482 6.45829 6.58373 6.86575 7.22440 7.37999 7.94313 8.75358 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.002085 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.883747 B =13422.948328 C =13661.650992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.143 4.143 3 C 0.071 3.929 4 H 0.128 0.872 5 C 0.518 3.482 6 O -0.573 6.573 7 N -0.604 5.604 8 C 0.096 3.904 9 C -0.127 4.127 10 C -0.148 4.148 11 C 0.084 3.916 12 H 0.074 0.926 13 N -0.682 5.682 14 C 0.067 3.933 15 C 0.449 3.551 16 O -0.614 6.614 17 N -0.590 5.590 18 C -0.329 4.329 19 H 0.055 0.945 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.230 1.230 26 C 0.129 3.871 27 N -0.550 5.550 28 C 0.023 3.977 29 C 0.016 3.984 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.349 0.651 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.065 0.935 52 H 0.068 0.932 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.923 -19.292 31.600 37.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.182 4.182 3 C -0.040 4.040 4 H 0.145 0.855 5 C 0.307 3.693 6 O -0.452 6.452 7 N -0.338 5.338 8 C -0.025 4.025 9 C -0.166 4.166 10 C -0.187 4.187 11 C -0.026 4.026 12 H 0.092 0.908 13 N -0.314 5.314 14 C -0.066 4.066 15 C 0.236 3.764 16 O -0.498 6.498 17 N -0.232 5.232 18 C -0.458 4.458 19 H 0.073 0.927 20 C -0.215 4.215 21 N -0.574 5.574 22 Si 0.785 3.215 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.153 1.153 26 C 0.005 3.995 27 N -0.274 5.274 28 C -0.124 4.124 29 C -0.132 4.132 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.169 0.831 42 H 0.099 0.901 43 H 0.124 0.876 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.059 0.941 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.084 0.916 52 H 0.087 0.913 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.830 -19.232 29.990 36.477 hybrid contribution -0.707 0.475 0.049 0.853 sum 7.122 -18.758 30.039 36.124 Atomic orbital electron populations 1.22293 0.93629 1.03190 1.03338 1.22054 0.98341 0.94811 1.02996 1.21834 0.89883 0.97099 0.95232 0.85495 1.21068 0.80828 0.77562 0.89874 1.90630 1.48910 1.59277 1.46358 1.48183 1.13526 1.59660 1.12421 1.22583 0.92533 0.97754 0.89671 1.21991 1.01872 0.95833 0.96895 1.22269 0.97976 1.02470 0.96001 1.21845 0.97636 0.95567 0.87585 0.90752 1.59923 1.30486 1.07442 1.33580 1.21598 1.02645 0.89421 0.92920 1.20949 0.82785 0.81970 0.90656 1.90545 1.53046 1.55181 1.51031 1.42026 1.58327 1.06660 1.16191 1.19008 1.40246 0.92776 0.93800 0.92672 1.26136 0.96892 0.98977 0.99466 1.69804 1.46252 1.16584 1.24752 0.85358 0.79194 0.77786 0.79140 1.18413 1.19828 1.15306 1.21278 1.00033 0.93528 0.84654 1.61852 1.06382 1.52584 1.06553 1.22509 1.02354 1.00375 0.87162 1.22572 0.99268 0.93581 0.97799 0.92079 0.91949 0.89639 0.89134 0.92959 0.89004 0.87104 0.91634 0.87815 0.91291 0.90796 0.83114 0.90099 0.87633 0.77476 0.91115 0.91847 0.90968 0.94098 0.90881 0.89977 0.91640 0.91302 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 8.14 71.98 0.59 -0.64 16 2 C -0.14 -1.54 4.33 30.60 0.13 -1.41 16 3 C 0.07 1.02 1.82 44.17 0.08 1.10 16 4 H 0.13 1.14 5.94 -2.39 -0.01 1.12 16 5 C 0.52 11.49 6.50 87.66 0.57 12.06 16 6 O -0.57 -18.49 13.45 -3.05 -0.04 -18.53 16 7 N -0.60 -10.86 2.41 -818.08 -1.98 -12.83 16 8 C 0.10 0.86 4.10 86.51 0.35 1.22 16 9 C -0.13 -1.18 6.10 30.82 0.19 -0.99 16 10 C -0.15 -2.21 5.14 30.62 0.16 -2.05 16 11 C 0.08 1.86 2.62 44.99 0.12 1.98 16 12 H 0.07 1.75 7.80 -2.39 -0.02 1.73 16 13 N -0.68 -20.45 5.88 -495.19 -2.91 -23.36 16 14 C 0.07 2.08 5.97 85.56 0.51 2.59 16 15 C 0.45 20.64 7.82 87.66 0.69 21.32 16 16 O -0.61 -34.65 15.78 -3.07 -0.05 -34.70 16 17 N -0.59 -28.31 5.09 -306.98 -1.56 -29.87 16 18 C -0.33 -19.56 10.16 84.04 0.85 -18.71 16 19 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 20 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 21 N -0.93 -56.84 13.96 21.67 0.30 -56.54 16 22 Si 0.97 39.19 27.74 68.60 1.90 41.10 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 26 C 0.13 3.02 6.05 86.36 0.52 3.55 16 27 N -0.55 -9.40 4.80 -927.73 -4.46 -13.86 16 28 C 0.02 0.23 9.36 127.69 1.19 1.43 16 29 C 0.02 0.29 8.61 127.69 1.10 1.39 16 30 H 0.06 0.62 4.34 -2.39 -0.01 0.61 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.21 7.16 -2.38 -0.02 0.19 16 33 H 0.09 0.69 6.76 -2.39 -0.02 0.67 16 34 H 0.05 0.80 6.77 -2.39 -0.02 0.79 16 35 H 0.09 0.62 6.81 -2.38 -0.02 0.60 16 36 H 0.11 0.50 4.06 -2.39 -0.01 0.49 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 1.05 7.44 -2.39 -0.02 1.03 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.35 10.76 8.18 -89.69 -0.73 10.02 16 42 H 0.08 2.00 7.43 -2.39 -0.02 1.99 16 43 H 0.11 2.99 8.06 -2.39 -0.02 2.97 16 44 H 0.39 15.45 5.76 -92.71 -0.53 14.91 16 45 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 46 H 0.06 1.98 7.00 -2.39 -0.02 1.97 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 48 H 0.04 0.30 6.89 -2.38 -0.02 0.28 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.08 0.58 7.98 -2.38 -0.02 0.56 16 51 H 0.06 1.70 5.61 -2.39 -0.01 1.68 16 52 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.04 0.58 6.35 -2.39 -0.02 0.56 16 Total: -1.00 -84.44 395.05 -1.66 -86.10 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.39 Total: 40.09 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 7.52 Total: 22.40 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -10.60 Total: -136.47 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.09 Total: -53.23 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.10 kcal Total: -84.44 -1.66 -86.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208411597.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.974 kcal (2) G-P(sol) polarization free energy of solvation -84.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds