Wall clock time and date at job start Sat Apr 11 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47105 * 2 1 4 4 H 1.08999 * 109.46932 * 177.29872 * 3 2 1 5 5 C 1.50694 * 109.46822 * 297.30336 * 3 2 1 6 6 O 1.21279 * 120.00434 * 100.00525 * 5 3 2 7 7 N 1.34782 * 120.00250 * 279.99606 * 5 3 2 8 8 C 1.46928 * 120.62639 * 0.02562 * 7 5 3 9 9 C 1.53181 * 108.89528 * 126.46544 * 8 7 5 10 10 C 1.53046 * 109.31350 * 54.56093 * 9 8 7 11 11 C 1.53040 * 109.53676 * 298.63788 * 10 9 8 12 12 H 1.09000 * 109.49702 * 301.40821 * 11 10 9 13 13 N 1.46903 * 109.49748 * 181.34641 * 11 10 9 14 14 C 1.46899 * 110.99730 * 84.99917 * 13 11 10 15 15 C 1.50702 * 109.46906 * 180.02562 * 14 13 11 16 16 O 1.21287 * 119.99975 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99806 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99684 * 179.97438 * 17 15 14 19 19 H 1.07992 * 120.00345 * 0.02562 * 18 17 15 20 20 C 1.38944 * 119.99540 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00564 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47125 * 89.99790 * 22 20 18 24 24 H 1.48496 * 109.47367 * 209.99916 * 22 20 18 25 25 H 1.48499 * 109.46955 * 329.99827 * 22 20 18 26 26 C 1.46958 * 120.65475 * 179.82548 * 7 5 3 27 27 N 1.46901 * 109.46870 * 57.30147 * 3 2 1 28 28 C 1.46900 * 111.00135 * 52.14690 * 27 3 2 29 29 C 1.46901 * 110.99688 * 176.10052 * 27 3 2 30 30 H 1.09001 * 109.46872 * 185.65058 * 1 2 3 31 31 H 1.08995 * 109.47166 * 305.65276 * 1 2 3 32 32 H 1.09005 * 109.46822 * 65.65361 * 1 2 3 33 33 H 1.08994 * 109.47634 * 239.99970 * 2 1 3 34 34 H 1.08997 * 109.47167 * 119.99991 * 2 1 3 35 35 H 1.08997 * 109.58874 * 6.60426 * 8 7 5 36 36 H 1.09003 * 109.58096 * 246.32369 * 8 7 5 37 37 H 1.08999 * 109.50395 * 174.51159 * 9 8 7 38 38 H 1.09006 * 109.49991 * 294.57959 * 9 8 7 39 39 H 1.08996 * 109.45717 * 58.65888 * 10 9 8 40 40 H 1.09002 * 109.46046 * 178.61872 * 10 9 8 41 41 H 1.00899 * 110.99785 * 321.05006 * 13 11 10 42 42 H 1.08999 * 109.47739 * 300.00087 * 14 13 11 43 43 H 1.09004 * 109.47389 * 60.00483 * 14 13 11 44 44 H 0.97000 * 120.00087 * 359.97438 * 17 15 14 45 45 H 0.97004 * 120.00511 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.46618 * 113.75371 * 26 7 5 47 47 H 1.08995 * 109.71279 * 353.45850 * 26 7 5 48 48 H 1.09001 * 109.46763 * 54.23477 * 28 27 3 49 49 H 1.09003 * 109.47147 * 174.23441 * 28 27 3 50 50 H 1.08997 * 109.47353 * 294.23854 * 28 27 3 51 51 H 1.08994 * 109.47041 * 56.04766 * 29 27 3 52 52 H 1.09005 * 109.46923 * 176.04841 * 29 27 3 53 53 H 1.09005 * 109.47293 * 296.04502 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 0.0484 5 6 1.5929 2.1333 -1.2625 6 8 0.6302 2.8705 -1.2421 7 7 2.2631 1.9320 -2.4144 8 6 3.4311 1.0415 -2.4550 9 6 3.2218 -0.0012 -3.5575 10 6 2.9290 0.7119 -4.8797 11 6 1.6462 1.5354 -4.7438 12 1 0.8197 0.8791 -4.4714 13 7 1.3485 2.1938 -6.0228 14 6 0.6028 1.2967 -6.9156 15 6 0.3167 2.0048 -8.2147 16 8 0.6962 3.1448 -8.3804 17 7 -0.3618 1.3716 -9.1922 18 6 -0.6225 2.0161 -10.3739 19 1 -0.2839 3.0308 -10.5217 20 6 -1.3214 1.3631 -11.3816 21 7 -1.7322 0.1278 -11.2024 22 14 -1.6761 2.2409 -12.9920 23 1 -0.5642 1.9950 -13.9451 24 1 -2.9444 1.7259 -13.5677 25 1 -1.8016 3.6995 -12.7435 26 6 1.8374 2.5953 -3.6548 27 7 1.4977 2.1536 1.1655 28 6 1.7552 1.4071 2.4043 29 6 2.0397 3.5163 1.2498 30 1 -0.3633 -1.0227 0.1012 31 1 -0.3633 0.5990 0.8350 32 1 -0.3633 0.4237 -0.9363 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5417 0.5397 -1.4938 36 1 4.3274 1.6240 -2.6684 37 1 4.1226 -0.6060 -3.6622 38 1 2.3808 -0.6434 -3.2960 39 1 3.7599 1.3722 -5.1278 40 1 2.8039 -0.0272 -5.6710 41 1 2.1933 2.5237 -6.4650 42 1 1.1963 0.4038 -7.1120 43 1 -0.3368 1.0116 -6.4423 44 1 -0.6656 0.4600 -9.0595 45 1 -2.2205 -0.3279 -11.9059 46 1 2.6022 3.3063 -3.9674 47 1 0.8971 3.1202 -3.4869 48 1 2.8215 1.1961 2.4863 49 1 1.4356 2.0018 3.2600 50 1 1.1998 0.4694 2.3856 51 1 1.8353 4.0468 0.3198 52 1 1.5695 4.0437 2.0798 53 1 3.1166 3.4697 1.4123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209670310.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:35 Heat of formation + Delta-G solvation = -83.767393 kcal Electronic energy + Delta-G solvation = -30825.928256 eV Core-core repulsion = 26731.626321 eV Total energy + Delta-G solvation = -4094.301934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67634 -40.27302 -39.26678 -37.88360 -36.42200 -35.80057 -33.98982 -33.31141 -33.08397 -31.37974 -29.08023 -28.17696 -27.76286 -26.36640 -25.72844 -24.20676 -23.35372 -22.69105 -21.53213 -21.05125 -19.95685 -19.52361 -18.37230 -17.85037 -17.42565 -16.88663 -16.69912 -16.47134 -16.38419 -16.02020 -15.60558 -15.47382 -15.34668 -15.24582 -15.02141 -14.63032 -14.49899 -14.19962 -14.06928 -13.86456 -13.61749 -13.56868 -13.33666 -13.31862 -13.19542 -12.99843 -12.89022 -12.54974 -12.43653 -12.41828 -12.29108 -12.13606 -12.03552 -12.00635 -11.92615 -11.72104 -11.68570 -11.51957 -10.63009 -10.40236 -10.03387 -9.73469 -9.27622 -9.22683 -8.48001 -5.96957 1.37006 1.40908 1.53882 1.62440 1.83603 2.02568 2.28555 2.89840 2.99416 3.18882 3.43110 3.50447 3.76706 3.82187 3.88695 3.95918 4.02750 4.11796 4.22928 4.26126 4.29119 4.37448 4.41270 4.42852 4.51655 4.54739 4.58568 4.61372 4.62641 4.72922 4.77662 4.83785 4.86996 4.92414 5.00521 5.02026 5.05294 5.10089 5.16903 5.17282 5.31759 5.39679 5.44830 5.50327 5.86931 5.93155 6.07010 6.09191 6.37726 6.45744 6.58145 7.10803 7.23409 7.53835 8.09078 8.69348 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.001974 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.467749 B =14181.161859 C =14218.153468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.073 3.927 4 H 0.085 0.915 5 C 0.515 3.485 6 O -0.566 6.566 7 N -0.610 5.610 8 C 0.098 3.902 9 C -0.123 4.123 10 C -0.148 4.148 11 C 0.084 3.916 12 H 0.072 0.928 13 N -0.679 5.679 14 C 0.071 3.929 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.269 1.269 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.131 3.869 27 N -0.546 5.546 28 C 0.023 3.977 29 C 0.027 3.973 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.349 0.651 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.042 0.958 49 H 0.074 0.926 50 H 0.081 0.919 51 H 0.045 0.955 52 H 0.076 0.924 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.311 -7.340 27.352 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.039 4.039 4 H 0.102 0.898 5 C 0.303 3.697 6 O -0.444 6.444 7 N -0.344 5.344 8 C -0.023 4.023 9 C -0.162 4.162 10 C -0.187 4.187 11 C -0.026 4.026 12 H 0.090 0.910 13 N -0.311 5.311 14 C -0.062 4.062 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.817 3.183 23 H -0.194 1.194 24 H -0.195 1.195 25 H -0.199 1.199 26 C 0.007 3.993 27 N -0.271 5.271 28 C -0.124 4.124 29 C -0.121 4.121 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.168 0.832 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.064 0.936 52 H 0.095 0.905 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.862 -5.961 27.309 30.769 hybrid contribution 0.708 -0.318 -1.377 1.581 sum 13.570 -6.279 25.932 29.934 Atomic orbital electron populations 1.21644 0.95797 1.01481 1.01208 1.21679 0.96618 0.91935 1.04677 1.21739 0.98653 0.95255 0.88233 0.89758 1.21049 0.82216 0.81009 0.85395 1.90696 1.28698 1.39162 1.85816 1.48221 1.30992 1.47360 1.07801 1.22128 0.87147 0.91665 1.01408 1.21858 1.03794 0.97497 0.93040 1.22263 0.97393 0.99817 0.99225 1.21828 0.97765 0.94291 0.88733 0.91007 1.59925 1.28006 1.38716 1.04441 1.21493 1.00194 0.94108 0.90393 1.20848 0.82565 0.87530 0.86585 1.90491 1.57533 1.20467 1.82452 1.41929 1.49647 1.15831 1.13549 1.19665 1.34909 0.99389 0.92416 0.90340 1.26059 0.96063 0.96557 1.02666 1.69670 1.38465 1.11883 1.36030 0.84916 0.78153 0.78036 0.77158 1.19405 1.19522 1.19929 1.21232 1.00691 0.94397 0.82969 1.61607 1.59877 1.02839 1.02778 1.22526 1.00279 0.99349 0.90220 1.22364 0.97634 0.89819 1.02308 0.91560 0.92130 0.95961 0.89715 0.87950 0.87278 0.89842 0.87742 0.91334 0.90837 0.91507 0.83163 0.91045 0.88625 0.76961 0.91255 0.91161 0.91887 0.93957 0.90755 0.90060 0.93632 0.90549 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.25 71.98 0.67 -1.84 16 2 C -0.11 -1.29 4.82 30.59 0.15 -1.14 16 3 C 0.07 1.11 1.30 44.17 0.06 1.17 16 4 H 0.08 0.87 6.79 -2.39 -0.02 0.86 16 5 C 0.51 12.05 5.10 87.65 0.45 12.49 16 6 O -0.57 -19.08 14.66 -3.03 -0.04 -19.12 16 7 N -0.61 -12.10 2.98 -818.91 -2.44 -14.54 16 8 C 0.10 1.06 5.77 86.36 0.50 1.56 16 9 C -0.12 -1.34 6.08 30.67 0.19 -1.15 16 10 C -0.15 -2.54 5.14 30.62 0.16 -2.38 16 11 C 0.08 2.06 2.62 44.98 0.12 2.18 16 12 H 0.07 1.87 7.80 -2.39 -0.02 1.85 16 13 N -0.68 -22.02 5.88 -495.22 -2.91 -24.93 16 14 C 0.07 2.48 5.97 85.56 0.51 2.99 16 15 C 0.44 21.28 7.82 87.66 0.69 21.97 16 16 O -0.62 -35.31 15.78 -3.05 -0.05 -35.36 16 17 N -0.57 -29.92 5.29 -306.99 -1.62 -31.54 16 18 C -0.33 -19.30 9.68 84.04 0.81 -18.48 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 21 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 22 Si 0.99 43.49 29.55 68.60 2.03 45.51 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.13 3.34 6.03 86.35 0.52 3.86 16 27 N -0.55 -9.34 3.68 -927.72 -3.41 -12.75 16 28 C 0.02 0.24 8.60 127.69 1.10 1.33 16 29 C 0.03 0.47 9.26 127.69 1.18 1.65 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.20 6.71 -2.39 -0.02 1.18 16 32 H 0.02 0.52 7.41 -2.38 -0.02 0.51 16 33 H 0.08 0.79 6.92 -2.39 -0.02 0.77 16 34 H 0.10 0.67 6.61 -2.39 -0.02 0.65 16 35 H 0.11 0.66 4.80 -2.39 -0.01 0.64 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.20 7.43 -2.39 -0.02 1.19 16 41 H 0.35 11.48 8.18 -89.69 -0.73 10.75 16 42 H 0.07 2.14 7.42 -2.39 -0.02 2.12 16 43 H 0.10 3.20 8.06 -2.38 -0.02 3.18 16 44 H 0.40 19.63 7.90 -92.71 -0.73 18.89 16 45 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 2.09 7.02 -2.39 -0.02 2.07 16 48 H 0.04 0.29 8.12 -2.39 -0.02 0.27 16 49 H 0.07 0.70 8.07 -2.39 -0.02 0.68 16 50 H 0.08 0.71 5.99 -2.39 -0.01 0.70 16 51 H 0.04 1.07 6.35 -2.39 -0.02 1.06 16 52 H 0.08 1.20 8.12 -2.38 -0.02 1.18 16 53 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 Total: -1.00 -76.80 407.28 -1.16 -77.96 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.54 Total: 40.64 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 7.56 Total: 23.93 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -10.10 Total: -133.56 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.09 Total: -54.48 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -76.80 -1.16 -77.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209670310.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.811 kcal (2) G-P(sol) polarization free energy of solvation -76.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds