Wall clock time and date at job start Sat Apr 11 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47383 * 2 1 4 4 N 1.46893 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.46900 * 111.00260 * 66.04924 * 4 3 2 6 6 C 1.46901 * 111.00086 * 190.00243 * 4 3 2 7 7 C 1.50697 * 109.47217 * 170.00035 * 6 4 3 8 8 O 1.21283 * 120.00345 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00172 * 179.97438 * 7 6 4 10 10 C 1.47025 * 125.64502 * 359.97438 * 9 7 6 11 11 C 1.54327 * 107.27105 * 178.97339 * 10 9 7 12 12 H 1.08999 * 110.72110 * 96.34588 * 11 10 9 13 13 C 1.52997 * 110.72340 * 219.44464 * 11 10 9 14 14 C 1.55163 * 102.94086 * 337.81105 * 11 10 9 15 15 H 1.08999 * 111.00142 * 277.42342 * 14 11 10 16 16 N 1.46903 * 111.00106 * 153.57745 * 14 11 10 17 17 C 1.46906 * 110.99493 * 155.00047 * 16 14 11 18 18 C 1.50707 * 109.46714 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99886 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99579 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99357 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00460 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99571 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00010 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46893 * 120.00111 * 25 23 21 28 28 H 1.48498 * 109.47310 * 239.99927 * 25 23 21 29 29 C 1.47421 * 125.65319 * 180.02562 * 9 7 6 30 30 H 1.09008 * 109.46923 * 59.99687 * 1 2 3 31 31 H 1.08998 * 109.46999 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47287 * 299.99983 * 1 2 3 33 33 H 1.09001 * 109.47287 * 240.00017 * 2 1 3 34 34 H 1.09000 * 109.47251 * 120.00337 * 2 1 3 35 35 H 1.09007 * 109.46495 * 59.99931 * 3 2 1 36 36 H 1.09000 * 109.47202 * 300.00366 * 3 2 1 37 37 H 1.08994 * 109.47564 * 183.95263 * 5 4 3 38 38 H 1.09010 * 109.46831 * 303.95791 * 5 4 3 39 39 H 1.09000 * 109.47350 * 63.94770 * 5 4 3 40 40 H 1.09002 * 109.47229 * 49.99832 * 6 4 3 41 41 H 1.08995 * 109.46820 * 290.00071 * 6 4 3 42 42 H 1.08999 * 109.88484 * 59.56157 * 10 9 7 43 43 H 1.08998 * 110.01061 * 298.46090 * 10 9 7 44 44 H 1.09002 * 109.47153 * 58.54532 * 13 11 10 45 45 H 1.09001 * 109.46832 * 298.54723 * 13 11 10 46 46 H 1.09004 * 109.47261 * 178.54704 * 13 11 10 47 47 H 1.00892 * 111.00495 * 31.04049 * 16 14 11 48 48 H 1.09003 * 109.46794 * 299.99011 * 17 16 14 49 49 H 1.08996 * 109.47360 * 59.99813 * 17 16 14 50 50 H 0.96997 * 120.00156 * 359.97438 * 20 18 17 51 51 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 52 52 H 1.09007 * 110.36440 * 322.93039 * 29 9 7 53 53 H 1.08996 * 110.37385 * 85.14226 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8856 -1.2524 6 6 4.0354 2.7931 0.2388 7 6 5.5216 2.7183 0.4768 8 8 6.0867 1.6454 0.4510 9 7 6.2229 3.8436 0.7183 10 6 5.6672 5.2035 0.7771 11 6 6.8326 6.1609 1.1039 12 1 7.2343 6.6046 0.1929 13 6 6.3817 7.2491 2.0803 14 6 7.8756 5.2243 1.7691 15 1 7.6489 5.0744 2.8247 16 7 9.2380 5.7452 1.5942 17 6 10.1289 5.2555 2.6546 18 6 11.5145 5.8089 2.4420 19 8 11.7378 6.5389 1.4995 20 7 12.5053 5.4925 3.2991 21 6 13.7659 5.9956 3.1053 22 1 13.9650 6.6450 2.2656 23 6 14.7873 5.6699 3.9892 24 7 14.5449 4.8801 5.0112 25 14 16.5050 6.3547 3.7248 26 1 16.5149 7.2119 2.5123 27 1 16.9027 7.1632 4.9053 28 1 17.4628 5.2339 3.5471 29 6 7.6744 3.9149 0.9662 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 5.1233 0.8322 -1.1974 38 1 3.6303 -0.1148 -1.4044 39 1 3.7453 1.5258 -2.0853 40 1 3.5485 3.2237 1.1139 41 1 3.8378 3.4187 -0.6315 42 1 4.9099 5.2610 1.5589 43 1 5.2280 5.4688 -0.1846 44 1 6.0117 6.7859 2.9950 45 1 5.5865 7.8393 1.6247 46 1 7.2254 7.8974 2.3169 47 1 9.2380 6.7535 1.5588 48 1 9.7524 5.5807 3.6244 49 1 10.1646 4.1665 2.6252 50 1 12.3265 4.9090 4.0530 51 1 15.2581 4.6525 5.6281 52 1 8.0017 3.0563 1.5527 53 1 8.2187 3.9588 0.0230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216499838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:14 Heat of formation + Delta-G solvation = -63.597951 kcal Electronic energy + Delta-G solvation = -29593.881771 eV Core-core repulsion = 25500.454450 eV Total energy + Delta-G solvation = -4093.427322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45323 -38.84497 -38.07097 -37.23549 -34.77178 -33.81542 -33.53715 -32.58775 -31.21526 -29.86440 -28.09573 -27.31944 -26.61659 -26.17164 -24.24861 -23.41105 -21.91279 -21.11979 -20.54043 -19.53098 -19.11572 -17.87704 -17.36987 -16.84304 -16.18656 -16.09858 -15.68716 -15.37198 -15.25516 -14.92503 -14.60826 -14.31230 -14.23722 -14.12983 -13.76841 -13.68299 -13.35238 -13.25098 -13.20376 -12.99761 -12.55579 -12.39692 -12.34446 -12.20037 -12.10605 -12.01648 -11.71659 -11.59915 -11.52245 -11.46069 -11.29531 -11.20933 -11.03996 -10.94321 -10.66595 -10.34186 -10.22416 -9.87216 -9.52210 -8.80468 -8.64540 -8.49104 -8.15258 -7.96526 -6.41745 -3.82669 2.49919 2.64053 3.16597 3.27321 3.34453 3.59249 3.89677 4.03173 4.12371 4.23543 4.32732 4.48171 4.59405 4.62725 4.70290 4.84056 4.86891 4.98980 5.04547 5.08409 5.11058 5.13568 5.17244 5.20446 5.22655 5.26164 5.27382 5.36573 5.39223 5.54117 5.57054 5.63495 5.72530 5.75324 5.81430 5.83303 5.84446 5.92941 5.95578 5.97046 6.03083 6.11517 6.27567 6.57941 6.70495 7.14890 7.35531 7.55439 7.57731 8.06096 8.06861 8.60651 9.17687 9.53951 10.04920 10.75954 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.001731 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.504098 B =16172.126408 C =16914.089412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.526 5.526 5 C 0.016 3.984 6 C 0.042 3.958 7 C 0.528 3.472 8 O -0.520 6.520 9 N -0.621 5.621 10 C 0.107 3.893 11 C -0.108 4.108 12 H 0.098 0.902 13 C -0.145 4.145 14 C 0.078 3.922 15 H 0.063 0.937 16 N -0.655 5.655 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.117 3.883 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.355 0.645 48 H 0.045 0.955 49 H 0.087 0.913 50 H 0.392 0.608 51 H 0.271 0.729 52 H 0.077 0.923 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.666 -2.888 -6.903 29.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.250 5.250 5 C -0.132 4.132 6 C -0.089 4.089 7 C 0.316 3.684 8 O -0.395 6.395 9 N -0.357 5.357 10 C -0.016 4.016 11 C -0.127 4.127 12 H 0.116 0.884 13 C -0.203 4.203 14 C -0.034 4.034 15 H 0.081 0.919 16 N -0.289 5.289 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.006 4.006 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.176 0.824 48 H 0.063 0.937 49 H 0.105 0.895 50 H 0.226 0.774 51 H 0.081 0.919 52 H 0.095 0.905 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -27.770 -3.905 -7.484 29.025 hybrid contribution 0.203 1.039 0.571 1.203 sum -27.567 -2.866 -6.913 28.564 Atomic orbital electron populations 1.21739 0.95546 1.01875 1.01711 1.21542 0.95282 0.96133 1.03036 1.22210 0.86521 0.97753 1.00748 1.61641 1.07187 1.19764 1.36432 1.22623 1.03037 0.99456 0.88092 1.21936 0.92887 0.91532 1.02556 1.20120 0.88738 0.82653 0.76880 1.90698 1.71244 1.27473 1.50056 1.48452 1.09569 1.06360 1.71291 1.22097 0.96594 0.81565 1.01393 1.22424 0.94597 0.95260 1.00424 0.88386 1.21803 1.01835 0.98032 0.98609 1.22736 0.88774 0.94104 0.97737 0.91929 1.59928 1.05396 1.15875 1.47674 1.21764 0.93059 1.00987 0.92494 1.19763 0.85960 0.86227 0.85431 1.90523 1.83244 1.40779 1.32238 1.41869 1.08556 1.44141 1.25376 1.19758 0.84558 1.27181 1.11413 0.87838 1.25270 1.00267 0.96917 0.95481 1.69626 1.34186 1.35780 1.14616 0.85799 0.81530 0.78616 0.78389 1.19207 1.20789 1.20728 1.22263 0.79565 0.97936 1.00873 0.92918 0.92447 0.92635 0.91809 0.90916 0.90750 0.94843 0.89260 0.91085 0.96202 0.88014 0.92029 0.91260 0.91327 0.92344 0.92006 0.91713 0.82439 0.93655 0.89492 0.77439 0.91908 0.90482 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.81 5.86 -26.73 -0.16 -0.96 16 3 C 0.06 0.39 4.96 -3.83 -0.02 0.37 16 4 N -0.53 -5.05 4.50 -244.37 -1.10 -6.15 16 5 C 0.02 0.15 9.01 60.06 0.54 0.69 16 6 C 0.04 0.36 4.64 -4.98 -0.02 0.34 16 7 C 0.53 6.44 7.57 -10.99 -0.08 6.35 16 8 O -0.52 -8.42 14.57 5.56 0.08 -8.34 16 9 N -0.62 -6.83 3.33 -170.52 -0.57 -7.39 16 10 C 0.11 0.83 6.08 -3.06 -0.02 0.81 16 11 C -0.11 -0.94 2.95 -88.78 -0.26 -1.20 16 12 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.15 -1.05 9.13 37.16 0.34 -0.72 16 14 C 0.08 0.91 2.83 -65.56 -0.19 0.72 16 15 H 0.06 0.72 7.72 -51.93 -0.40 0.32 16 16 N -0.66 -9.93 6.04 -105.71 -0.64 -10.57 16 17 C 0.05 0.85 6.03 -4.97 -0.03 0.82 16 18 C 0.44 10.28 7.82 -10.98 -0.09 10.19 16 19 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 20 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 25 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.12 1.50 6.60 -2.53 -0.02 1.49 16 30 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.43 6.47 -51.93 -0.34 0.10 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.46 7.93 -51.92 -0.41 0.05 16 36 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 37 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 38 H 0.07 0.61 6.30 -51.92 -0.33 0.29 16 39 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.10 0.70 7.93 -51.93 -0.41 0.28 16 41 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 42 H 0.07 0.43 7.82 -51.93 -0.41 0.02 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.35 5.42 8.14 -39.30 -0.32 5.10 16 48 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 49 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 50 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 51 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 52 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 53 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 423.63 15.07 6.38 6.38 Total: -1.00 -33.26 423.63 -9.49 -42.74 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -9.51 Total: 10.44 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 0.13 Total: 10.51 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -1.64 Total: -62.25 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.17 Total: -23.87 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.26 -9.49 -42.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216499838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.855 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds