Wall clock time and date at job start Sat Apr 11 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47383 * 2 1 4 4 N 1.46893 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.46900 * 111.00260 * 66.04924 * 4 3 2 6 6 C 1.46901 * 111.00086 * 190.00243 * 4 3 2 7 7 C 1.50697 * 109.47217 * 170.00035 * 6 4 3 8 8 O 1.21283 * 120.00345 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00172 * 179.97438 * 7 6 4 10 10 C 1.47025 * 125.64502 * 359.97438 * 9 7 6 11 11 C 1.54327 * 107.27105 * 178.97339 * 10 9 7 12 12 H 1.08999 * 110.72110 * 96.34588 * 11 10 9 13 13 C 1.52997 * 110.72340 * 219.44464 * 11 10 9 14 14 C 1.55163 * 102.94086 * 337.81105 * 11 10 9 15 15 H 1.08999 * 111.00142 * 277.42342 * 14 11 10 16 16 N 1.46903 * 111.00106 * 153.57745 * 14 11 10 17 17 C 1.46906 * 110.99493 * 155.00047 * 16 14 11 18 18 C 1.50707 * 109.46714 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99886 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99579 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99357 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00460 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99571 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00010 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46893 * 120.00111 * 25 23 21 28 28 H 1.48498 * 109.47310 * 239.99927 * 25 23 21 29 29 C 1.47421 * 125.65319 * 180.02562 * 9 7 6 30 30 H 1.09008 * 109.46923 * 59.99687 * 1 2 3 31 31 H 1.08998 * 109.46999 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47287 * 299.99983 * 1 2 3 33 33 H 1.09001 * 109.47287 * 240.00017 * 2 1 3 34 34 H 1.09000 * 109.47251 * 120.00337 * 2 1 3 35 35 H 1.09007 * 109.46495 * 59.99931 * 3 2 1 36 36 H 1.09000 * 109.47202 * 300.00366 * 3 2 1 37 37 H 1.08994 * 109.47564 * 183.95263 * 5 4 3 38 38 H 1.09010 * 109.46831 * 303.95791 * 5 4 3 39 39 H 1.09000 * 109.47350 * 63.94770 * 5 4 3 40 40 H 1.09002 * 109.47229 * 49.99832 * 6 4 3 41 41 H 1.08995 * 109.46820 * 290.00071 * 6 4 3 42 42 H 1.08999 * 109.88484 * 59.56157 * 10 9 7 43 43 H 1.08998 * 110.01061 * 298.46090 * 10 9 7 44 44 H 1.09002 * 109.47153 * 58.54532 * 13 11 10 45 45 H 1.09001 * 109.46832 * 298.54723 * 13 11 10 46 46 H 1.09004 * 109.47261 * 178.54704 * 13 11 10 47 47 H 1.00892 * 111.00495 * 31.04049 * 16 14 11 48 48 H 1.09003 * 109.46794 * 299.99011 * 17 16 14 49 49 H 1.08996 * 109.47360 * 59.99813 * 17 16 14 50 50 H 0.96997 * 120.00156 * 359.97438 * 20 18 17 51 51 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 52 52 H 1.09007 * 110.36440 * 322.93039 * 29 9 7 53 53 H 1.08996 * 110.37385 * 85.14226 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8856 -1.2524 6 6 4.0354 2.7931 0.2388 7 6 5.5216 2.7183 0.4768 8 8 6.0867 1.6454 0.4510 9 7 6.2229 3.8436 0.7183 10 6 5.6672 5.2035 0.7771 11 6 6.8326 6.1609 1.1039 12 1 7.2343 6.6046 0.1929 13 6 6.3817 7.2491 2.0803 14 6 7.8756 5.2243 1.7691 15 1 7.6489 5.0744 2.8247 16 7 9.2380 5.7452 1.5942 17 6 10.1289 5.2555 2.6546 18 6 11.5145 5.8089 2.4420 19 8 11.7378 6.5389 1.4995 20 7 12.5053 5.4925 3.2991 21 6 13.7659 5.9956 3.1053 22 1 13.9650 6.6450 2.2656 23 6 14.7873 5.6699 3.9892 24 7 14.5449 4.8801 5.0112 25 14 16.5050 6.3547 3.7248 26 1 16.5149 7.2119 2.5123 27 1 16.9027 7.1632 4.9053 28 1 17.4628 5.2339 3.5471 29 6 7.6744 3.9149 0.9662 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 5.1233 0.8322 -1.1974 38 1 3.6303 -0.1148 -1.4044 39 1 3.7453 1.5258 -2.0853 40 1 3.5485 3.2237 1.1139 41 1 3.8378 3.4187 -0.6315 42 1 4.9099 5.2610 1.5589 43 1 5.2280 5.4688 -0.1846 44 1 6.0117 6.7859 2.9950 45 1 5.5865 7.8393 1.6247 46 1 7.2254 7.8974 2.3169 47 1 9.2380 6.7535 1.5588 48 1 9.7524 5.5807 3.6244 49 1 10.1646 4.1665 2.6252 50 1 12.3265 4.9090 4.0530 51 1 15.2581 4.6525 5.6281 52 1 8.0017 3.0563 1.5527 53 1 8.2187 3.9588 0.0230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216499838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:13 Heat of formation + Delta-G solvation = -88.993360 kcal Electronic energy + Delta-G solvation = -29594.982999 eV Core-core repulsion = 25500.454450 eV Total energy + Delta-G solvation = -4094.528549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34362 -40.21289 -39.38693 -38.04790 -36.22289 -35.57247 -34.08221 -33.50234 -33.20968 -30.80379 -29.10632 -27.98318 -27.58227 -27.24461 -25.88499 -24.17638 -22.80098 -21.68772 -21.48141 -20.98742 -20.27810 -19.87431 -18.27985 -17.84594 -17.47308 -16.90345 -16.80746 -16.48320 -16.35637 -16.18023 -15.93794 -15.61909 -15.25675 -14.99977 -14.87503 -14.79524 -14.48978 -14.16156 -13.99176 -13.79086 -13.72034 -13.49195 -13.41961 -13.17772 -13.01154 -12.93011 -12.79895 -12.72223 -12.62465 -12.41423 -12.39003 -12.11964 -12.09057 -11.97242 -11.91263 -11.52091 -11.50442 -11.44654 -10.81079 -10.36136 -10.02533 -9.70531 -9.41474 -9.29890 -8.47458 -5.96407 1.36312 1.41725 1.56026 1.60916 1.79949 2.03556 2.28744 2.86227 2.98842 3.19851 3.29907 3.49071 3.55479 3.78498 3.96505 4.01340 4.13670 4.19481 4.24813 4.28789 4.29462 4.32590 4.45626 4.47748 4.50859 4.52657 4.55206 4.56059 4.65267 4.70084 4.76682 4.84271 4.87640 4.89401 4.92789 5.01691 5.08467 5.17728 5.24674 5.27207 5.31045 5.39507 5.40875 5.43938 5.87242 5.92650 6.07344 6.09738 6.35583 6.54062 6.58545 7.11545 7.17496 7.54849 8.09541 8.70129 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.001731 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.504098 B =16172.126408 C =16914.089412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.058 3.942 4 N -0.549 5.549 5 C 0.022 3.978 6 C 0.050 3.950 7 C 0.520 3.480 8 O -0.572 6.572 9 N -0.619 5.619 10 C 0.107 3.893 11 C -0.100 4.100 12 H 0.091 0.909 13 C -0.141 4.141 14 C 0.082 3.918 15 H 0.072 0.928 16 N -0.668 5.668 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.117 3.883 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.354 0.646 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.396 0.604 51 H 0.277 0.723 52 H 0.054 0.946 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.153 -1.712 -6.548 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.069 4.069 4 N -0.274 5.274 5 C -0.126 4.126 6 C -0.081 4.081 7 C 0.310 3.690 8 O -0.450 6.450 9 N -0.354 5.354 10 C -0.016 4.016 11 C -0.119 4.119 12 H 0.110 0.890 13 C -0.198 4.198 14 C -0.029 4.029 15 H 0.090 0.910 16 N -0.302 5.302 17 C -0.067 4.067 18 C 0.226 3.774 19 O -0.507 6.507 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.007 4.007 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.146 0.854 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.175 0.825 48 H 0.089 0.911 49 H 0.113 0.887 50 H 0.230 0.770 51 H 0.087 0.913 52 H 0.072 0.928 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.301 -2.713 -7.112 31.242 hybrid contribution 0.947 0.651 0.425 1.225 sum -29.354 -2.061 -6.687 30.177 Atomic orbital electron populations 1.21700 0.94202 1.02197 1.02311 1.21527 0.96397 0.96009 1.02024 1.22252 0.84772 0.97985 1.01871 1.61594 1.08814 1.20617 1.36353 1.22478 1.01018 1.00216 0.88916 1.21974 0.89947 0.91628 1.04544 1.20913 0.90274 0.82009 0.75817 1.90680 1.72504 1.29483 1.52364 1.48526 1.08601 1.07728 1.70508 1.22348 0.96429 0.79044 1.03733 1.22394 0.93871 0.95359 1.00254 0.89020 1.21781 1.02051 0.97413 0.98551 1.22731 0.87672 0.94166 0.98287 0.91007 1.59841 1.07193 1.15910 1.47218 1.21586 0.89719 1.01015 0.94397 1.20800 0.87712 0.84872 0.83982 1.90490 1.84384 1.42284 1.33583 1.41945 1.08466 1.44579 1.26050 1.19724 0.86413 1.28467 1.11745 0.90188 1.26056 1.03559 0.96806 0.94862 1.69687 1.35493 1.36047 1.14931 0.84858 0.76921 0.78131 0.78347 1.19685 1.19476 1.19792 1.22067 0.81134 0.97838 0.99638 0.92222 0.92341 0.92063 0.92395 0.92423 0.89478 0.93645 0.92456 0.90694 0.94955 0.85440 0.89724 0.88473 0.88993 0.91633 0.89787 0.92900 0.82482 0.91065 0.88718 0.77037 0.91316 0.92766 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.49 16 2 C -0.12 -1.45 5.86 30.60 0.18 -1.27 16 3 C 0.06 0.67 4.96 86.31 0.43 1.10 16 4 N -0.55 -9.75 4.50 -927.05 -4.17 -13.92 16 5 C 0.02 0.41 9.01 127.69 1.15 1.56 16 6 C 0.05 0.73 4.64 85.56 0.40 1.13 16 7 C 0.52 12.31 7.57 87.66 0.66 12.97 16 8 O -0.57 -19.24 14.57 -3.04 -0.04 -19.28 16 9 N -0.62 -12.85 3.33 -811.79 -2.70 -15.55 16 10 C 0.11 1.29 6.08 86.73 0.53 1.82 16 11 C -0.10 -1.51 2.95 -9.60 -0.03 -1.54 16 12 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 13 C -0.14 -1.60 9.13 71.98 0.66 -0.94 16 14 C 0.08 1.83 2.83 46.31 0.13 1.96 16 15 H 0.07 1.51 7.72 -2.39 -0.02 1.50 16 16 N -0.67 -20.11 6.04 -488.36 -2.95 -23.06 16 17 C 0.07 2.23 6.03 85.56 0.52 2.75 16 18 C 0.44 20.89 7.82 87.66 0.69 21.58 16 19 O -0.62 -34.20 15.78 -3.06 -0.05 -34.25 16 20 N -0.57 -29.68 5.29 -306.98 -1.62 -31.30 16 21 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 C 0.12 3.07 6.60 86.86 0.57 3.64 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.74 6.47 -2.39 -0.02 0.73 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.79 7.93 -2.38 -0.02 0.77 16 36 H 0.05 0.43 8.12 -2.39 -0.02 0.41 16 37 H 0.06 1.48 5.88 -2.39 -0.01 1.46 16 38 H 0.07 1.30 6.30 -2.38 -0.02 1.29 16 39 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.13 1.22 7.93 -2.39 -0.02 1.21 16 41 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 42 H 0.10 0.72 7.82 -2.39 -0.02 0.70 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.35 10.73 8.14 -89.70 -0.73 10.00 16 48 H 0.07 2.09 8.09 -2.39 -0.02 2.07 16 49 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 50 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 51 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 52 H 0.05 1.64 8.04 -2.38 -0.02 1.62 16 53 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.37 423.63 -1.91 -77.28 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -0.56 Total: 38.96 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 7.88 Total: 25.73 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -11.16 Total: -133.71 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.09 Total: -53.53 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -75.37 -1.91 -77.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216499838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.713 kcal (2) G-P(sol) polarization free energy of solvation -75.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds