Wall clock time and date at job start Sat Apr 11 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47234 * 2 1 4 4 C 1.52995 * 109.47285 * 239.99582 * 2 1 3 5 5 C 1.53004 * 109.46839 * 119.99723 * 2 1 3 6 6 H 1.09002 * 109.46995 * 184.05941 * 5 2 1 7 7 N 1.46494 * 109.47472 * 304.06174 * 5 2 1 8 8 C 1.34777 * 120.00080 * 274.99865 * 7 5 2 9 9 N 1.34777 * 120.00136 * 179.97438 * 8 7 5 10 10 O 1.21585 * 119.99889 * 0.02562 * 8 7 5 11 11 C 1.50707 * 109.46887 * 64.06343 * 5 2 1 12 12 O 1.21280 * 119.99496 * 269.66405 * 11 5 2 13 13 N 1.34773 * 120.00041 * 89.66576 * 11 5 2 14 14 C 1.46500 * 120.00056 * 184.93740 * 13 11 5 15 15 C 1.52992 * 109.47499 * 179.97438 * 14 13 11 16 16 C 1.53355 * 109.41512 * 295.12672 * 15 14 13 17 17 C 1.53198 * 109.14513 * 178.67070 * 16 15 14 18 18 N 1.46933 * 108.89240 * 54.57997 * 17 16 15 19 19 C 1.36930 * 120.63032 * 126.33805 * 18 17 16 20 20 H 1.08000 * 120.00276 * 327.78897 * 19 18 17 21 21 C 1.38814 * 120.00127 * 147.78808 * 19 18 17 22 22 N 1.31612 * 119.99587 * 344.15794 * 21 19 18 23 23 Si 1.86799 * 120.00003 * 164.15292 * 21 19 18 24 24 H 1.48490 * 109.47396 * 60.00357 * 23 21 19 25 25 H 1.48499 * 109.46834 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47217 * 299.99950 * 23 21 19 27 27 C 1.46924 * 118.73717 * 306.31704 * 18 17 16 28 28 C 1.53038 * 109.46479 * 174.99911 * 15 14 13 29 29 H 1.09000 * 109.47057 * 300.00066 * 1 2 3 30 30 H 1.09000 * 109.46775 * 59.99736 * 1 2 3 31 31 H 1.08995 * 109.47232 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47069 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47455 * 299.99848 * 3 2 1 34 34 H 1.09000 * 109.47152 * 59.99993 * 3 2 1 35 35 H 1.09003 * 109.46987 * 306.97249 * 4 2 1 36 36 H 1.09008 * 109.46715 * 66.96673 * 4 2 1 37 37 H 1.08998 * 109.47251 * 186.96392 * 4 2 1 38 38 H 0.96999 * 119.99886 * 94.99679 * 7 5 2 39 39 H 0.97003 * 120.00097 * 0.02562 * 9 8 7 40 40 H 0.96997 * 119.99727 * 179.97438 * 9 8 7 41 41 H 0.96999 * 120.00167 * 4.93225 * 13 11 5 42 42 H 1.09000 * 109.47333 * 59.99381 * 14 13 11 43 43 H 1.09004 * 109.46790 * 299.99784 * 14 13 11 44 44 H 1.09001 * 109.46179 * 55.02415 * 15 14 13 45 45 H 1.08997 * 109.68598 * 58.71137 * 16 15 14 46 46 H 1.08993 * 109.47295 * 298.50725 * 16 15 14 47 47 H 1.09000 * 109.58994 * 294.71993 * 17 16 15 48 48 H 1.09005 * 109.58088 * 174.43478 * 17 16 15 49 49 H 0.97006 * 119.99943 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.58348 * 173.39903 * 27 18 17 51 51 H 1.08999 * 109.58531 * 293.67979 * 27 18 17 52 52 H 1.08998 * 109.49470 * 61.42944 * 28 15 14 53 53 H 1.09006 * 109.49639 * 301.33745 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 1 3.1276 -0.6587 1.2865 7 7 1.4735 -0.0894 2.4434 8 6 2.0712 0.9921 2.9815 9 7 1.5496 1.5737 4.0798 10 8 3.0803 1.4437 2.4756 11 6 1.6215 -2.1682 1.2000 12 8 0.5653 -2.5108 1.6879 13 7 2.4208 -3.0813 0.6138 14 6 1.9673 -4.4668 0.4693 15 6 3.0548 -5.2899 -0.2238 16 6 3.2517 -4.7727 -1.6540 17 6 4.3645 -5.5790 -2.3311 18 7 4.0364 -7.0086 -2.2444 19 6 4.0074 -7.7873 -3.3704 20 1 3.7085 -7.3589 -4.3157 21 6 4.3623 -9.1273 -3.2969 22 7 5.0151 -9.5784 -2.2470 23 14 3.9131 -10.2901 -4.6882 24 1 4.5430 -9.8209 -5.9484 25 1 4.4012 -11.6557 -4.3689 26 1 2.4375 -10.3182 -4.8529 27 6 3.7404 -7.5868 -0.9266 28 6 2.6340 -6.7607 -0.2630 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.5785 -1.7067 -1.3136 36 1 1.7821 -0.1405 -2.1348 37 1 3.1229 -0.8305 -1.1890 38 1 0.6681 -0.4494 2.8468 39 1 0.7443 1.2137 4.4833 40 1 1.9801 2.3518 4.4673 41 1 3.2965 -2.8211 0.2875 42 1 1.0569 -4.4905 -0.1296 43 1 1.7651 -4.8875 1.4544 44 1 3.9898 -5.1943 0.3281 45 1 3.5299 -3.7191 -1.6285 46 1 2.3243 -4.8911 -2.2142 47 1 5.3118 -5.3903 -1.8259 48 1 4.4436 -5.2851 -3.3778 49 1 5.2628 -10.5149 -2.1954 50 1 3.4052 -8.6170 -1.0465 51 1 4.6374 -7.5640 -0.3078 52 1 1.7122 -6.8602 -0.8361 53 1 2.4717 -7.1199 0.7533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225154951.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:23 Heat of formation + Delta-G solvation = -90.881610 kcal Electronic energy + Delta-G solvation = -31447.375437 eV Core-core repulsion = 27352.765007 eV Total energy + Delta-G solvation = -4094.610430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96091 -40.41911 -39.34756 -37.79989 -36.42656 -35.00562 -34.46953 -33.85027 -32.54024 -31.42647 -29.35553 -28.16640 -27.93420 -27.53863 -25.55544 -23.82057 -22.75193 -22.24480 -21.82936 -20.73261 -19.96853 -19.57944 -18.67728 -18.49944 -17.38492 -17.14988 -16.96645 -16.75338 -16.16845 -15.86886 -15.61489 -15.41741 -15.29431 -15.09301 -15.00373 -14.78275 -14.48541 -14.31357 -14.01769 -13.82285 -13.74351 -13.35598 -13.06441 -12.97584 -12.92564 -12.78493 -12.55543 -12.53574 -12.28902 -12.26271 -12.02877 -11.89503 -11.83172 -11.70869 -11.59122 -11.34989 -11.20674 -11.07620 -10.86446 -10.57598 -10.52935 -10.07130 -9.97521 -8.59825 -7.86589 -5.35448 1.42851 1.46795 1.48908 1.55482 1.74040 2.16783 2.39273 2.51777 3.28229 3.51692 3.65486 3.72742 3.74184 3.86962 3.87480 3.96842 4.09499 4.12349 4.34844 4.50231 4.54830 4.57313 4.72537 4.75494 4.76928 4.80571 4.83484 4.92182 4.95981 5.03145 5.04389 5.05570 5.14909 5.17005 5.26690 5.31458 5.32217 5.33962 5.38958 5.45303 5.46419 5.50601 5.55051 5.67829 5.79349 5.85827 6.07985 6.42845 6.47609 7.04408 7.12833 7.17953 7.67200 7.89218 8.42106 9.19095 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.002244 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.233503 B =12475.420659 C =12823.890530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.119 4.119 4 C -0.150 4.150 5 C 0.161 3.839 6 H 0.105 0.895 7 N -0.722 5.722 8 C 0.704 3.296 9 N -0.850 5.850 10 O -0.624 6.624 11 C 0.519 3.481 12 O -0.565 6.565 13 N -0.709 5.709 14 C 0.138 3.862 15 C -0.079 4.079 16 C -0.113 4.113 17 C 0.139 3.861 18 N -0.611 5.611 19 C -0.265 4.265 20 H 0.062 0.938 21 C -0.048 4.048 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.278 1.278 27 C 0.180 3.820 28 C -0.121 4.121 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.410 0.590 39 H 0.411 0.589 40 H 0.422 0.578 41 H 0.412 0.588 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.014 0.986 48 H 0.050 0.950 49 H 0.250 0.750 50 H 0.042 0.958 51 H -0.002 1.002 52 H 0.052 0.948 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 23.322 10.858 27.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 C -0.177 4.177 4 C -0.208 4.208 5 C 0.051 3.949 6 H 0.123 0.877 7 N -0.379 5.379 8 C 0.402 3.598 9 N -0.419 5.419 10 O -0.505 6.505 11 C 0.305 3.695 12 O -0.444 6.444 13 N -0.361 5.361 14 C 0.015 3.985 15 C -0.098 4.098 16 C -0.152 4.152 17 C 0.014 3.986 18 N -0.334 5.334 19 C -0.395 4.395 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.204 1.204 27 C 0.054 3.946 28 C -0.160 4.160 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.247 0.753 39 H 0.242 0.758 40 H 0.255 0.745 41 H 0.249 0.751 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.032 0.968 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.016 0.984 52 H 0.071 0.929 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.364 23.159 10.690 27.172 hybrid contribution -0.060 -1.141 -0.253 1.170 sum -9.424 22.019 10.437 26.126 Atomic orbital electron populations 1.21815 0.93743 1.01636 1.02171 1.20843 0.96552 0.96329 0.93142 1.21760 1.00923 0.93806 1.01184 1.22009 1.01912 1.00264 0.96602 1.20698 1.00053 0.87912 0.86280 0.87687 1.44683 1.31774 1.31148 1.30342 1.15995 0.82649 0.80175 0.80955 1.42803 1.33288 1.35848 1.29927 1.90969 1.27671 1.66846 1.65003 1.20628 0.84014 0.87718 0.77168 1.90678 1.24714 1.81729 1.47236 1.45984 1.20496 1.09392 1.60219 1.21290 0.96965 0.80115 1.00157 1.21203 0.98065 0.94238 0.96321 1.21977 0.99111 0.99124 0.94940 1.21080 0.95079 0.84016 0.98449 1.44268 1.80330 1.05282 1.03558 1.19408 1.38027 0.92405 0.89684 0.92033 1.25881 0.98200 1.00435 0.99836 1.70163 1.41253 1.14453 1.32030 0.85401 0.78125 0.77835 0.79440 1.20041 1.22092 1.20442 1.20498 0.93357 0.95819 0.84902 1.21953 0.98985 0.95010 1.00063 0.92424 0.91754 0.93492 0.92886 0.92306 0.93348 0.92677 0.91029 0.91180 0.75290 0.75831 0.74462 0.75076 0.91957 0.91743 0.90772 0.89612 0.92826 0.96765 0.93176 0.94142 0.93916 0.98425 0.92914 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.00 71.98 0.58 -1.73 16 2 C -0.07 -1.11 0.62 -52.18 -0.03 -1.14 16 3 C -0.12 -2.12 7.05 71.98 0.51 -1.61 16 4 C -0.15 -2.33 7.73 71.98 0.56 -1.77 16 5 C 0.16 2.89 1.93 44.25 0.09 2.97 16 6 H 0.11 1.97 7.58 -2.39 -0.02 1.95 16 7 N -0.72 -11.68 4.07 -461.41 -1.88 -13.56 16 8 C 0.70 12.25 7.36 179.05 1.32 13.57 16 9 N -0.85 -7.61 8.88 -184.75 -1.64 -9.25 16 10 O -0.62 -15.47 14.31 -3.98 -0.06 -15.52 16 11 C 0.52 10.88 5.32 87.66 0.47 11.34 16 12 O -0.56 -14.87 15.20 -3.03 -0.05 -14.92 16 13 N -0.71 -13.82 4.34 -463.07 -2.01 -15.83 16 14 C 0.14 3.25 5.07 86.38 0.44 3.69 16 15 C -0.08 -2.19 2.19 -10.66 -0.02 -2.22 16 16 C -0.11 -3.24 5.27 30.78 0.16 -3.08 16 17 C 0.14 5.41 6.50 86.36 0.56 5.97 16 18 N -0.61 -29.94 2.97 -699.08 -2.08 -32.01 16 19 C -0.26 -14.47 9.54 84.04 0.80 -13.67 16 20 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 21 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 22 N -0.93 -55.25 11.44 21.65 0.25 -55.00 16 23 Si 0.96 44.77 29.58 68.60 2.03 46.80 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 C 0.18 8.42 5.27 86.36 0.46 8.88 16 28 C -0.12 -4.19 5.36 30.67 0.16 -4.02 16 29 H 0.06 0.93 7.50 -2.39 -0.02 0.91 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.95 6.76 -2.39 -0.02 0.94 16 32 H 0.05 1.06 7.79 -2.39 -0.02 1.04 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.96 5.67 -2.39 -0.01 0.94 16 35 H 0.05 0.96 6.95 -2.39 -0.02 0.94 16 36 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.41 5.96 7.86 -92.71 -0.73 5.23 16 39 H 0.41 1.46 8.84 -92.71 -0.82 0.64 16 40 H 0.42 2.90 8.93 -92.71 -0.83 2.07 16 41 H 0.41 6.59 7.64 -92.71 -0.71 5.89 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.09 1.85 7.16 -2.39 -0.02 1.84 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.05 1.94 7.93 -2.38 -0.02 1.93 16 49 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 50 H 0.04 2.29 6.35 -2.39 -0.02 2.28 16 51 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 52 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -71.34 405.08 -1.12 -72.46 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -2.14 Total: 21.89 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.45 Total: 14.94 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -7.35 Total: -125.65 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.10 Total: -30.44 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.34 -1.12 -72.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225154951.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.424 kcal (2) G-P(sol) polarization free energy of solvation -71.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds