Wall clock time and date at job start Sat Apr 11 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47217 * 2 1 4 4 C 1.53003 * 109.47107 * 240.00537 * 2 1 3 5 5 C 1.52999 * 109.47458 * 120.00592 * 2 1 3 6 6 H 1.08999 * 109.47383 * 184.45388 * 5 2 1 7 7 N 1.46504 * 109.47001 * 304.45000 * 5 2 1 8 8 C 1.34776 * 120.00096 * 275.00296 * 7 5 2 9 9 N 1.34770 * 119.99943 * 179.97438 * 8 7 5 10 10 O 1.21592 * 119.99581 * 359.97438 * 8 7 5 11 11 C 1.50696 * 109.47241 * 64.44906 * 5 2 1 12 12 O 1.21278 * 120.00317 * 268.42034 * 11 5 2 13 13 N 1.34773 * 119.99995 * 88.42403 * 11 5 2 14 14 C 1.46504 * 120.00335 * 175.00175 * 13 11 5 15 15 H 1.08998 * 109.47085 * 34.99401 * 14 13 11 16 16 C 1.53000 * 109.46688 * 274.99752 * 14 13 11 17 17 C 1.53000 * 109.46718 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47213 * 60.00292 * 17 16 14 19 19 C 1.53001 * 109.46968 * 300.00065 * 18 17 16 20 20 C 1.52996 * 109.47250 * 154.99748 * 14 13 11 21 21 H 1.08999 * 109.46917 * 60.00121 * 20 14 13 22 22 N 1.46494 * 109.47422 * 299.99874 * 20 14 13 23 23 C 1.36935 * 120.00178 * 155.00041 * 22 20 14 24 24 H 1.08000 * 120.00335 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99982 * 180.02562 * 23 22 20 26 26 N 1.31615 * 119.99754 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00017 * 0.02562 * 25 23 22 28 28 H 1.48492 * 109.47463 * 89.99975 * 27 25 23 29 29 H 1.48499 * 109.47151 * 210.00212 * 27 25 23 30 30 H 1.48502 * 109.47172 * 329.99871 * 27 25 23 31 31 H 1.09001 * 109.46958 * 299.99198 * 1 2 3 32 32 H 1.08993 * 109.47618 * 59.99764 * 1 2 3 33 33 H 1.09010 * 109.47270 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47217 * 180.02562 * 3 2 1 35 35 H 1.08993 * 109.47019 * 300.00602 * 3 2 1 36 36 H 1.09001 * 109.46502 * 60.00522 * 3 2 1 37 37 H 1.09008 * 109.47022 * 297.12597 * 4 2 1 38 38 H 1.08997 * 109.47350 * 57.12300 * 4 2 1 39 39 H 1.08994 * 109.47278 * 177.13347 * 4 2 1 40 40 H 0.96997 * 119.99908 * 95.00183 * 7 5 2 41 41 H 0.96994 * 120.00479 * 359.97438 * 9 8 7 42 42 H 0.97010 * 120.00080 * 180.02562 * 9 8 7 43 43 H 0.97004 * 120.00239 * 354.99651 * 13 11 5 44 44 H 1.08999 * 109.47403 * 60.00249 * 16 14 13 45 45 H 1.08999 * 109.47537 * 299.99914 * 16 14 13 46 46 H 1.08998 * 109.47401 * 299.99860 * 17 16 14 47 47 H 1.09007 * 109.47154 * 180.02562 * 17 16 14 48 48 H 1.08998 * 109.47428 * 179.97438 * 18 17 16 49 49 H 1.08999 * 109.46847 * 59.99800 * 18 17 16 50 50 H 1.08998 * 109.46654 * 299.99824 * 19 18 17 51 51 H 1.08993 * 109.46906 * 180.02562 * 19 18 17 52 52 H 0.97007 * 119.99540 * 335.00342 * 22 20 14 53 53 H 0.97000 * 119.99921 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0400 -0.7214 1.2491 6 1 3.1271 -0.6528 1.2899 7 7 1.4661 -0.0955 2.4430 8 6 2.0560 0.9881 2.9855 9 7 1.5278 1.5641 4.0834 10 8 3.0648 1.4460 2.4842 11 6 1.6297 -2.1704 1.1952 12 8 0.5847 -2.5240 1.6988 13 7 2.4243 -3.0735 0.5873 14 6 2.0809 -4.4971 0.6293 15 1 0.9974 -4.6107 0.5955 16 6 2.6182 -5.1132 1.9227 17 6 2.2591 -6.5998 1.9669 18 6 2.8838 -7.3114 0.7652 19 6 2.3467 -6.6952 -0.5282 20 6 2.7061 -5.2083 -0.5724 21 1 3.7896 -5.0947 -0.5385 22 7 2.1918 -4.6184 -1.8108 23 6 2.9277 -4.6954 -2.9631 24 1 3.8870 -5.1913 -2.9591 25 6 2.4405 -4.1359 -4.1364 26 7 3.1480 -4.2095 -5.2438 27 14 0.7815 -3.2775 -4.1433 28 1 0.9674 -1.8385 -3.8272 29 1 0.1595 -3.4133 -5.4849 30 1 -0.1013 -3.8983 -3.1233 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 1.7192 -1.7627 -1.2240 38 1 1.6351 -0.2379 -2.1385 39 1 3.1287 -0.6769 -1.2754 40 1 0.6616 -0.4610 2.8430 41 1 0.7229 1.1991 4.4831 42 1 1.9522 2.3443 4.4737 43 1 3.2234 -2.7809 0.1218 44 1 2.1727 -4.6066 2.7789 45 1 3.7017 -4.9996 1.9566 46 1 1.1755 -6.7130 1.9333 47 1 2.6414 -7.0387 2.8886 48 1 2.6284 -8.3705 0.7969 49 1 3.9674 -7.1981 0.7989 50 1 1.2632 -6.8085 -0.5619 51 1 2.7914 -7.2024 -1.3843 52 1 1.3299 -4.1732 -1.8145 53 1 2.8075 -3.8189 -6.0637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229699430.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:41 Heat of formation + Delta-G solvation = -100.029131 kcal Electronic energy + Delta-G solvation = -32945.927796 eV Core-core repulsion = 28850.920700 eV Total energy + Delta-G solvation = -4095.007096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05116 -40.65614 -39.39827 -37.76543 -35.90709 -35.31328 -34.91538 -33.86851 -33.30565 -30.92226 -29.95098 -28.24928 -28.17918 -27.78201 -25.30549 -23.63869 -22.46893 -22.25990 -21.66899 -21.03764 -20.12994 -19.71631 -19.39026 -18.49323 -17.43865 -17.27669 -17.13858 -16.72942 -16.15826 -15.94735 -15.77220 -15.33664 -15.18068 -15.06164 -14.84842 -14.70910 -14.58681 -14.49442 -14.27705 -13.89805 -13.65899 -13.56014 -13.27492 -13.05108 -12.99855 -12.87196 -12.59432 -12.41187 -12.32516 -12.15031 -12.06781 -11.92549 -11.82303 -11.77477 -11.68506 -11.46585 -11.36284 -11.11512 -11.00734 -10.76885 -10.58782 -10.05773 -9.92848 -9.27154 -7.98799 -5.30077 1.37428 1.38014 1.41810 1.43725 1.72236 2.15451 2.38885 2.48805 3.33636 3.44701 3.50925 3.63096 3.67850 3.77827 3.81505 4.02147 4.13067 4.19782 4.26250 4.30330 4.41463 4.43676 4.48459 4.58896 4.64660 4.68258 4.73880 4.83045 4.93108 4.95213 4.97602 5.00259 5.07282 5.14452 5.21836 5.24025 5.27071 5.29063 5.31013 5.37004 5.42941 5.46983 5.53127 5.64222 5.82768 5.86158 6.07145 6.24787 6.48606 7.04709 7.10697 7.12862 7.66670 7.87113 8.04969 9.22682 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009985 B = 0.004824 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.416079 B = 5802.901388 C = 7851.294741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.117 4.117 4 C -0.153 4.153 5 C 0.164 3.836 6 H 0.104 0.896 7 N -0.718 5.718 8 C 0.704 3.296 9 N -0.847 5.847 10 O -0.625 6.625 11 C 0.521 3.479 12 O -0.561 6.561 13 N -0.705 5.705 14 C 0.145 3.855 15 H 0.069 0.931 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.129 4.129 20 C 0.175 3.825 21 H 0.059 0.941 22 N -0.745 5.745 23 C -0.213 4.213 24 H 0.064 0.936 25 C -0.050 4.050 26 N -0.981 5.981 27 Si 0.931 3.069 28 H -0.265 1.265 29 H -0.307 1.307 30 H -0.268 1.268 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.411 0.589 41 H 0.412 0.588 42 H 0.423 0.577 43 H 0.409 0.591 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.050 0.950 51 H 0.046 0.954 52 H 0.360 0.640 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 6.551 22.043 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 C -0.174 4.174 4 C -0.211 4.211 5 C 0.054 3.946 6 H 0.122 0.878 7 N -0.376 5.376 8 C 0.402 3.598 9 N -0.417 5.417 10 O -0.505 6.505 11 C 0.307 3.693 12 O -0.440 6.440 13 N -0.355 5.355 14 C 0.040 3.960 15 H 0.087 0.913 16 C -0.154 4.154 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.169 4.169 20 C 0.066 3.934 21 H 0.077 0.923 22 N -0.387 5.387 23 C -0.344 4.344 24 H 0.082 0.918 25 C -0.242 4.242 26 N -0.632 5.632 27 Si 0.760 3.240 28 H -0.191 1.191 29 H -0.234 1.234 30 H -0.193 1.193 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.242 0.758 42 H 0.256 0.744 43 H 0.245 0.755 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.193 0.807 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.463 6.510 21.768 23.155 hybrid contribution -1.169 0.494 -0.797 1.499 sum -5.632 7.004 20.971 22.816 Atomic orbital electron populations 1.21817 0.93658 1.01577 1.02333 1.20834 0.96675 0.96557 0.92806 1.21740 1.00908 0.93485 1.01254 1.22078 1.01950 1.00238 0.96812 1.20563 0.99902 0.88193 0.85949 0.87780 1.44615 1.31914 1.31029 1.30001 1.15994 0.82663 0.80132 0.80973 1.42762 1.33347 1.35695 1.29858 1.90978 1.27764 1.66574 1.65217 1.20548 0.83605 0.87656 0.77520 1.90641 1.23961 1.81305 1.48113 1.46068 1.28058 1.06951 1.54379 1.21251 0.99839 0.79311 0.95603 0.91293 1.21810 1.01635 0.96406 0.95540 1.21468 1.00848 0.93689 0.98692 1.21518 1.00582 0.99660 0.93221 1.22071 1.00451 0.96474 0.97946 1.20655 0.97212 0.91821 0.83668 0.92340 1.42771 1.21319 1.68391 1.06259 1.18958 1.00374 1.28241 0.86846 0.91788 1.25194 1.00923 1.02654 0.95389 1.69843 1.40180 1.52640 1.00505 0.85807 0.81874 0.80238 0.76063 1.19081 1.23432 1.19344 0.91222 0.92370 0.93760 0.92898 0.92842 0.92419 0.92931 0.92779 0.91542 0.75138 0.75763 0.74396 0.75531 0.91792 0.90699 0.92213 0.89664 0.90935 0.91470 0.93131 0.93560 0.80745 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.02 71.98 0.58 -2.90 16 2 C -0.07 -1.75 0.62 -52.18 -0.03 -1.79 16 3 C -0.12 -3.00 7.06 71.98 0.51 -2.49 16 4 C -0.15 -4.74 7.72 71.98 0.56 -4.18 16 5 C 0.16 4.09 1.94 44.24 0.09 4.18 16 6 H 0.10 2.71 7.58 -2.39 -0.02 2.69 16 7 N -0.72 -14.71 4.05 -461.41 -1.87 -16.58 16 8 C 0.70 14.73 7.38 179.06 1.32 16.05 16 9 N -0.85 -9.70 8.88 -184.75 -1.64 -11.34 16 10 O -0.62 -17.98 14.31 -4.01 -0.06 -18.04 16 11 C 0.52 14.40 5.28 87.66 0.46 14.86 16 12 O -0.56 -17.35 14.89 -3.02 -0.05 -17.39 16 13 N -0.70 -19.63 3.79 -442.54 -1.68 -21.31 16 14 C 0.15 4.17 2.02 44.99 0.09 4.26 16 15 H 0.07 2.25 7.51 -2.39 -0.02 2.23 16 16 C -0.11 -2.61 5.49 30.59 0.17 -2.44 16 17 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 18 C -0.11 -2.54 5.92 30.60 0.18 -2.36 16 19 C -0.13 -4.02 5.50 30.61 0.17 -3.86 16 20 C 0.17 5.90 2.29 45.00 0.10 6.00 16 21 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 22 N -0.75 -32.01 4.76 -322.89 -1.54 -33.55 16 23 C -0.21 -11.31 10.41 84.03 0.87 -10.43 16 24 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 25 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 26 N -0.98 -61.18 13.97 21.65 0.30 -60.88 16 27 Si 0.93 45.04 27.74 68.60 1.90 46.94 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 29 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 30 H -0.27 -12.28 6.52 99.48 0.65 -11.64 16 31 H 0.07 1.52 7.49 -2.39 -0.02 1.51 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.28 6.82 -2.38 -0.02 1.27 16 34 H 0.05 1.47 7.81 -2.39 -0.02 1.45 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.47 5.66 -2.39 -0.01 1.46 16 37 H 0.05 1.80 6.18 -2.38 -0.01 1.79 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.41 7.43 7.84 -92.71 -0.73 6.71 16 41 H 0.41 2.36 8.84 -92.71 -0.82 1.54 16 42 H 0.42 3.85 8.93 -92.70 -0.83 3.02 16 43 H 0.41 11.31 8.10 -92.70 -0.75 10.56 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.36 15.80 5.66 -92.70 -0.52 15.27 16 53 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.91 404.78 -1.66 -71.57 By element: Atomic # 1 Polarization: 52.80 SS G_CDS: -2.75 Total: 50.05 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 5.71 Total: 10.53 kcal Atomic # 7 Polarization: -137.23 SS G_CDS: -6.42 Total: -143.65 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.10 Total: -35.43 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.94 kcal Total: -69.91 -1.66 -71.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229699430.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.460 kcal (2) G-P(sol) polarization free energy of solvation -69.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds