Wall clock time and date at job start Sat Apr 11 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47704 * 54.99481 * 5 4 3 7 7 N 1.46502 * 109.46798 * 294.99603 * 5 4 3 8 8 C 1.34777 * 119.99975 * 299.99931 * 7 5 4 9 9 N 1.34780 * 120.00086 * 179.97438 * 8 7 5 10 10 O 1.21589 * 120.00291 * 0.02562 * 8 7 5 11 11 C 1.50701 * 109.47025 * 175.00080 * 5 4 3 12 12 O 1.21278 * 120.00307 * 99.99672 * 11 5 4 13 13 N 1.34776 * 119.99593 * 279.99058 * 11 5 4 14 14 C 1.46508 * 119.99727 * 179.97438 * 13 11 5 15 15 H 1.08996 * 109.46962 * 35.00901 * 14 13 11 16 16 C 1.52991 * 109.47245 * 275.00475 * 14 13 11 17 17 C 1.52997 * 109.47432 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46934 * 59.99569 * 17 16 14 19 19 C 1.52991 * 109.47413 * 300.00442 * 18 17 16 20 20 C 1.52999 * 109.46631 * 155.00408 * 14 13 11 21 21 H 1.09000 * 109.47424 * 60.00218 * 20 14 13 22 22 N 1.46501 * 109.47402 * 299.99950 * 20 14 13 23 23 C 1.36940 * 119.99721 * 155.00094 * 22 20 14 24 24 H 1.08000 * 120.00141 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99557 * 180.02562 * 23 22 20 26 26 N 1.31614 * 119.99877 * 180.02562 * 25 23 22 27 27 Si 1.86796 * 120.00045 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46887 * 90.00337 * 27 25 23 29 29 H 1.48502 * 109.47280 * 210.00011 * 27 25 23 30 30 H 1.48493 * 109.47428 * 330.00775 * 27 25 23 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 34 34 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 35 35 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 36 36 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 37 37 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 38 38 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 39 39 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 40 40 H 0.97003 * 120.00132 * 120.00100 * 7 5 4 41 41 H 0.97003 * 120.00021 * 0.02562 * 9 8 7 42 42 H 0.96994 * 120.00188 * 180.02562 * 9 8 7 43 43 H 0.96995 * 120.00209 * 0.02562 * 13 11 5 44 44 H 1.09003 * 109.47500 * 300.00505 * 16 14 13 45 45 H 1.09005 * 109.47688 * 60.00096 * 16 14 13 46 46 H 1.09006 * 109.47143 * 300.00107 * 17 16 14 47 47 H 1.09002 * 109.47735 * 180.02562 * 17 16 14 48 48 H 1.09001 * 109.46806 * 179.97438 * 18 17 16 49 49 H 1.08996 * 109.46720 * 60.00824 * 18 17 16 50 50 H 1.08996 * 109.47488 * 299.99911 * 19 18 17 51 51 H 1.09010 * 109.47224 * 179.97438 * 19 18 17 52 52 H 0.96995 * 120.00029 * 335.00421 * 22 20 14 53 53 H 0.97002 * 120.00152 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 1 3.6458 3.4234 0.8422 7 7 3.6920 3.5405 -1.2513 8 6 4.1161 3.0456 -2.4311 9 7 3.7587 3.6485 -3.5823 10 8 4.8204 2.0548 -2.4569 11 6 5.5820 2.8865 0.1232 12 8 6.2712 3.0399 -0.8629 13 7 6.1594 2.7175 1.3293 14 6 7.6195 2.7185 1.4490 15 1 8.0422 3.4243 0.7339 16 6 8.1560 1.3155 1.1587 17 6 9.6808 1.3164 1.2843 18 6 10.0754 1.7299 2.7036 19 6 9.5389 3.1329 2.9939 20 6 8.0145 3.1322 2.8680 21 1 7.5918 2.4265 3.5832 22 7 7.5008 4.4757 3.1460 23 6 7.2633 4.8643 4.4374 24 1 7.4552 4.1805 5.2511 25 6 6.7760 6.1372 4.7007 26 7 6.5483 6.5110 5.9419 27 14 6.4449 7.3201 3.2934 28 1 5.0461 7.1517 2.8240 29 1 6.6453 8.7150 3.7617 30 1 7.3798 7.0339 2.1758 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.9337 0.9284 0.8891 39 1 3.9329 0.9286 -0.8908 40 1 3.1299 4.3307 -1.2308 41 1 3.1966 4.4388 -3.5618 42 1 4.0636 3.2922 -4.4314 43 1 5.6082 2.5945 2.1178 44 1 7.7333 0.6097 1.8738 45 1 7.8746 1.0207 0.1477 46 1 10.1039 2.0222 0.5695 47 1 10.0632 0.3169 1.0771 48 1 11.1617 1.7300 2.7932 49 1 9.6524 1.0240 3.4184 50 1 9.9618 3.8387 2.2791 51 1 9.8196 3.4273 4.0052 52 1 7.3288 5.0899 2.4152 53 1 6.2082 7.4005 6.1260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230347894.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:50 Heat of formation + Delta-G solvation = -109.003695 kcal Electronic energy + Delta-G solvation = -31861.353207 eV Core-core repulsion = 27765.956944 eV Total energy + Delta-G solvation = -4095.396262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66823 -40.42438 -39.01198 -37.12558 -35.92183 -35.15566 -35.03121 -34.38281 -33.31454 -31.52622 -30.65309 -29.73553 -27.50574 -25.32008 -24.01737 -23.48820 -22.52897 -22.34015 -21.69039 -21.21097 -20.58681 -19.67646 -19.50319 -18.40397 -17.64330 -17.22753 -16.78236 -16.55095 -16.07905 -15.99066 -15.58168 -15.41540 -15.24485 -15.02698 -14.92669 -14.74457 -14.66111 -14.45321 -14.23914 -14.02217 -13.63795 -13.57335 -13.48408 -13.06760 -12.91398 -12.74921 -12.39755 -12.19436 -12.17713 -12.07871 -11.99765 -11.82023 -11.76661 -11.70493 -11.49563 -11.44853 -11.23576 -11.08547 -10.94317 -10.77841 -10.44477 -9.90266 -9.81295 -9.28490 -7.99156 -5.31179 1.35640 1.39657 1.45530 1.67927 1.95735 2.28958 2.48608 2.53863 3.32103 3.47014 3.65126 3.70851 3.79368 3.94092 4.02629 4.11035 4.17800 4.18588 4.25180 4.26976 4.40710 4.44287 4.48380 4.55791 4.57077 4.67393 4.85120 4.87640 4.92507 5.00595 5.01403 5.04899 5.15053 5.21193 5.22656 5.26568 5.29286 5.32883 5.39341 5.45711 5.50874 5.54050 5.54472 5.69971 5.81641 5.96001 6.12687 6.24557 6.68885 7.09371 7.19402 7.39816 7.85425 7.86139 8.04573 9.22247 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.003825 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.812522 B = 7318.668747 C = 8245.632366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.123 4.123 5 C 0.153 3.847 6 H 0.136 0.864 7 N -0.722 5.722 8 C 0.703 3.297 9 N -0.855 5.855 10 O -0.613 6.613 11 C 0.493 3.507 12 O -0.556 6.556 13 N -0.711 5.711 14 C 0.151 3.849 15 H 0.054 0.946 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.130 4.130 20 C 0.178 3.822 21 H 0.062 0.938 22 N -0.746 5.746 23 C -0.217 4.217 24 H 0.065 0.935 25 C -0.054 4.054 26 N -0.980 5.980 27 Si 0.944 3.056 28 H -0.271 1.271 29 H -0.301 1.301 30 H -0.272 1.272 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.415 0.585 41 H 0.410 0.590 42 H 0.416 0.584 43 H 0.409 0.591 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.046 0.954 51 H 0.049 0.951 52 H 0.359 0.641 53 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 -11.097 -15.524 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.142 4.142 4 C -0.161 4.161 5 C 0.043 3.957 6 H 0.153 0.847 7 N -0.380 5.380 8 C 0.401 3.599 9 N -0.425 5.425 10 O -0.492 6.492 11 C 0.278 3.722 12 O -0.433 6.433 13 N -0.363 5.363 14 C 0.045 3.955 15 H 0.072 0.928 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.171 4.171 20 C 0.070 3.930 21 H 0.080 0.920 22 N -0.388 5.388 23 C -0.348 4.348 24 H 0.083 0.917 25 C -0.246 4.246 26 N -0.631 5.631 27 Si 0.773 3.227 28 H -0.197 1.197 29 H -0.228 1.228 30 H -0.198 1.198 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.251 0.749 41 H 0.240 0.760 42 H 0.248 0.752 43 H 0.245 0.755 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.065 0.935 51 H 0.068 0.932 52 H 0.191 0.809 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.913 -11.820 -15.865 21.699 hybrid contribution -0.505 1.874 -0.488 2.001 sum -9.418 -9.945 -16.352 21.331 Atomic orbital electron populations 1.21745 0.94984 1.01899 1.02026 1.21499 0.96506 0.96576 1.01637 1.21500 0.92805 0.97321 1.02621 1.21877 0.97376 0.93418 1.03464 1.20835 0.89881 0.97183 0.87799 0.84677 1.44563 1.56277 1.33710 1.03419 1.16128 0.79242 0.82892 0.81653 1.42780 1.58378 1.34581 1.06756 1.90922 1.42342 1.29269 1.86668 1.21499 0.92043 0.75859 0.82796 1.90708 1.65581 1.49294 1.37691 1.45944 1.07368 1.73403 1.09535 1.21066 0.80327 0.97492 0.96619 0.92793 1.21769 0.96720 0.95540 1.01255 1.21473 0.94253 1.02133 0.96963 1.21501 1.01015 0.95504 0.96710 1.22069 0.96628 0.97562 1.00799 1.20603 0.93092 0.86000 0.93312 0.91994 1.42783 1.79233 1.13028 1.03800 1.19000 1.33750 0.97520 0.84507 0.91691 1.25266 1.02570 0.99037 0.97691 1.69849 1.53668 1.20277 1.19351 0.85586 0.78645 0.78648 0.79820 1.19725 1.22817 1.19808 0.92486 0.92149 0.92801 0.93310 0.91769 0.90452 0.92060 0.90196 0.91798 0.74873 0.75976 0.75155 0.75524 0.90417 0.93199 0.92863 0.89843 0.90815 0.91087 0.93510 0.93180 0.80851 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.99 5.93 30.59 0.18 -1.80 16 3 C -0.10 -1.70 5.10 30.59 0.16 -1.55 16 4 C -0.12 -2.63 4.54 30.59 0.14 -2.49 16 5 C 0.15 3.55 3.01 44.25 0.13 3.68 16 6 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 7 N -0.72 -15.10 4.66 -461.41 -2.15 -17.24 16 8 C 0.70 18.28 7.59 179.05 1.36 19.64 16 9 N -0.86 -14.09 8.88 -184.74 -1.64 -15.73 16 10 O -0.61 -22.26 13.03 18.46 0.24 -22.02 16 11 C 0.49 15.74 6.78 87.66 0.59 16.34 16 12 O -0.56 -22.51 13.34 19.43 0.26 -22.26 16 13 N -0.71 -21.51 4.91 -442.54 -2.17 -23.68 16 14 C 0.15 4.93 1.98 44.99 0.09 5.02 16 15 H 0.05 2.07 7.58 -2.39 -0.02 2.06 16 16 C -0.11 -3.17 5.49 30.59 0.17 -3.01 16 17 C -0.11 -2.72 5.92 30.59 0.18 -2.53 16 18 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 19 C -0.13 -4.35 5.50 30.58 0.17 -4.18 16 20 C 0.18 6.37 2.29 44.98 0.10 6.48 16 21 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 22 N -0.75 -33.04 4.76 -323.00 -1.54 -34.58 16 23 C -0.22 -11.58 10.41 84.03 0.87 -10.71 16 24 H 0.07 3.78 8.06 -2.91 -0.02 3.75 16 25 C -0.05 -3.04 5.50 84.86 0.47 -2.58 16 26 N -0.98 -60.53 13.97 21.65 0.30 -60.23 16 27 Si 0.94 44.83 27.73 68.60 1.90 46.74 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 30 H -0.27 -12.49 6.52 99.48 0.65 -11.84 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.00 7.75 -2.39 -0.02 0.98 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.83 6.04 -2.39 -0.01 1.81 16 40 H 0.41 5.68 8.84 -92.71 -0.82 4.86 16 41 H 0.41 3.72 8.84 -92.71 -0.82 2.90 16 42 H 0.42 6.35 8.93 -92.71 -0.83 5.52 16 43 H 0.41 11.13 8.60 -92.71 -0.80 10.33 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 52 H 0.36 16.29 5.66 -92.71 -0.52 15.76 16 53 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -78.83 414.87 -2.19 -81.02 By element: Atomic # 1 Polarization: 52.43 SS G_CDS: -2.90 Total: 49.53 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 5.51 Total: 18.45 kcal Atomic # 7 Polarization: -144.27 SS G_CDS: -7.19 Total: -151.46 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: 0.50 Total: -44.28 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Total: -78.83 -2.19 -81.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230347894.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.985 kcal (2) G-P(sol) polarization free energy of solvation -78.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds